#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-check)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages qt)
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/b/"
- "backports.ssl_match_hostname/backports.ssl_match_hostname-"
- version ".tar.gz"))
+ (uri (pypi-uri "backports.ssl_match_hostname" version))
(sha256
(base32
"1wndipik52cyqy0677zdgp90i435pmvwd89cz98lm7ri0y3xjajh"))))
@code{subprocess} feature.")
(license license:expat)))
+(define-public python-cftime
+ (package
+ (name "python-cftime")
+ (version "1.0.3.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "cftime" version))
+ (sha256
+ (base32
+ "0362dhxbzk593walyjz30dll6y2y79wialik647cbwdsf3ad0x6x"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("python-coveralls" ,python-coveralls)
+ ("python-cython" ,python-cython)
+ ("python-pytest-cov" ,python-pytest-cov)))
+ (home-page "https://github.com/Unidata/cftime")
+ (synopsis "Library for time handling")
+ (description
+ "This package provides time-handling functionality that used to be part
+of the netcdf4 package before.")
+ ;; This package claims to include code under the GPLv3 but is released
+ ;; under ISC.
+ (license (list license:isc license:gpl3+))))
+
(define-public python-netcdf4
(package
(name "python-netcdf4")
- (version "1.2.9")
+ (version "1.4.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "netCDF4" version))
(sha256
(base32
- "1h6jq338amlbk0ilzvjyl7cck80i0bah9a5spn9in71vy2qxm7i5"))))
+ "0c0sklgrmv15ygliin8qq0hp7vanmbi74m6zpi0r1ksr0hssyd5r"))))
(build-system python-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'configure-locations
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "HDF5_DIR" (assoc-ref inputs "hdf5"))
+ #t)))))
(native-inputs
`(("python-cython" ,python-cython)))
(propagated-inputs
- `(("python-numpy" ,python-numpy)))
+ `(("python-numpy" ,python-numpy)
+ ("python-cftime" ,python-cftime)))
(inputs
`(("netcdf" ,netcdf)
("hdf4" ,hdf4)
("hdf5" ,hdf5)))
- (arguments
- '(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- (setenv "NO_NET" "1") ; disable opendap tests
- (with-directory-excursion "test"
- (setenv "PYTHONPATH" ; find and add the library we just built
- (string-append
- (car (find-files "../build" "lib.*"
- #:directories? #:t
- #:fail-on-error? #:t))
- ":" (getenv "PYTHONPATH")))
- (zero? (system* "python" "run_all.py"))))))))
- (home-page
- "https://github.com/Unidata/netcdf4-python")
+ (home-page "https://github.com/Unidata/netcdf4-python")
(synopsis "Python/numpy interface to the netCDF library")
(description "Netcdf4-python is a Python interface to the netCDF C
library. netCDF version 4 has many features not found in earlier
(source
(origin
(method url-fetch)
- (uri (string-append "https://pypi.python.org/packages/source/l/lockfile/"
- "lockfile-" version ".tar.gz"))
+ (uri (pypi-uri "lockfile" version))
(sha256
(base32
"16gpx5hm73ah5n1079ng0vy381hl802v606npkx4x8nb0gg05vba"))))
(source
(origin
(method url-fetch)
- (uri (string-append "https://pypi.python.org/packages/source/m/mechanize/mechanize-"
- version ".tar.gz"))
+ (uri (pypi-uri "mechanize" version))
(sha256
(base32
"0rj7r166i1dyrq0ihm5rijfmvhs8a04im28lv05c0c3v206v4rrf"))))
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/p/python-mimeparse/python-mimeparse-"
- version ".tar.gz"))
+ (uri (pypi-uri "python-mimeparse" version))
(sha256
(base32
"0y2g6cl660bpz11srgqyvvm8gmywpgyx8g0xfvbiyr0af0yv1r3n"))))
(define-public python-click
(package
(name "python-click")
- (version "6.7")
+ (version "7.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "click" version))
(sha256
(base32
- "02qkfpykbq35id8glfgwc38yc430427yd05z1wc5cnld8zgicmgi"))))
+ "1mzjixd4vjbjvzb6vylki9w1556a9qmdh35kzmq6cign46av952v"))))
(build-system python-build-system)
(arguments
- `(;; The tests are fragile, depending on a specific version of pytest:
- ;; <https://github.com/pallets/click/issues/823>
- #:tests? #f
- #:phases
+ `(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'fix-paths
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "click/_unicodefun.py"
(("'locale'")
(string-append "'" glibc "/bin/locale'"))))
- #t)))))
+ #t))
+ (replace 'check
+ (lambda _
+ (invoke "python" "-m" "pytest"))))))
(native-inputs
`(("python-pytest" ,python-pytest)))
- (home-page "http://click.pocoo.org")
+ (home-page "https://palletsprojects.com/p/click/")
(synopsis "Command line library for Python")
(description
"Click is a Python package for creating command line interfaces in a
(version "2.6.0")
(source (origin
(method url-fetch)
- (uri
- (string-append
- "https://pypi.python.org/packages/source/j/jsonschema/jsonschema-"
- version ".tar.gz"))
+ (uri (pypi-uri "jsonschema" version))
(sha256
(base32
"00kf3zmpp9ya4sydffpifn0j0mzm342a2vzh82p6r0vh10cg7xbg"))))
(arguments
'(#:phases
(modify-phases %standard-phases
- (replace 'check (lambda _ (zero? (system* "nosetests")))))))
+ (replace 'check (lambda _ (invoke "nosetests"))))))
(native-inputs
`(("python-nose" ,python-nose)
("python-vcversioner" ,python-vcversioner)))
(define-public python-itsdangerous
(package
(name "python-itsdangerous")
- (version "0.24")
+ (version "1.1.0")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/i/itsdangerous/itsdangerous-"
- version ".tar.gz"))
+ (uri (pypi-uri "itsdangerous" version))
(sha256
(base32
- "06856q6x675ly542ig0plbqcyab6ksfzijlyf1hzhgg3sgwgrcyb"))))
+ "068zpbksq5q2z4dckh2k1zbcq43ay74ylqn77rni797j0wyh66rj"))))
(build-system python-build-system)
- (home-page "https://github.com/mitsuhiko/itsdangerous")
+ (home-page "https://palletsprojects.com/p/itsdangerous/")
(synopsis "Python library for passing data to/from untrusted environments")
(description
"Itsdangerous provides various helpers to pass trusted data to untrusted
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/M/MarkupSafe/MarkupSafe-"
- version ".tar.gz"))
+ (uri (pypi-uri "MarkupSafe" version))
(sha256
(base32
"0rdn1s8x9ni7ss8rfiacj7x1085lx8mh2zdwqslnw8xc3l4nkgm6"))))
(modify-phases %standard-phases
(replace 'check
(lambda _
- (zero? (system* "python" "test_pystache.py")))))))))
+ (invoke "python" "test_pystache.py"))))))))
(define-public python-joblib
(package
`(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda _
- (zero? (system* "nosetests" "-v")))))))
+ (lambda _ (invoke "nosetests" "-v"))))))
(propagated-inputs
`(("python-colormath" ,python-colormath)))
(native-inputs
(with-directory-excursion "doc"
(copy-recursively sphinx-theme-checkout scipy-sphinx-theme)
(mkdir-p html)
- (system* "make" "html" pyver)
- (system* "make" "latex" "PAPER=a4" pyver)
- (system* "make" "-C" "build/latex"
+ (invoke "make" "html" pyver)
+ (invoke "make" "latex" "PAPER=a4" pyver)
+ (invoke "make" "-C" "build/latex"
"all-pdf" "PAPER=a4" pyver)
;; FIXME: Generation of the info file fails.
- ;; (system* "make" "info" pyver)
+ ;; (invoke "make" "info" pyver)
;; (mkdir-p info)
;; (copy-file "build/texinfo/numpy.info"
;; (string-append info "/numpy.info"))
(modify-phases %standard-phases
(replace 'check
(lambda _
- (zero? (system* "nosetests" "--all-modules" "-v" "colorspacious")))))))
+ (invoke "nosetests" "--all-modules" "-v" "colorspacious"))))))
(home-page "https://github.com/njsmith/colorspacious")
(synopsis "Python library for colorspace conversions")
(description "@code{colorspacious} is a Python library that lets you
(source
(origin
(method url-fetch)
- (uri (string-append "https://pypi.python.org/packages/source/s/"
- "simplegeneric/simplegeneric-" version ".zip"))
+ (uri (pypi-uri "simplegeneric" version ".zip"))
(sha256
(base32 "0wwi1c6md4vkbcsfsf8dklf3vr4mcdj4mpxkanwgb6jb1432x5yw"))))
(build-system python-build-system)
(source
(origin
(method url-fetch)
- (uri (string-append "https://pypi.python.org/packages/source/i/"
- "ipython_genutils/ipython_genutils-"
- version ".tar.gz"))
+ (uri (pypi-uri "ipython_genutils" version))
(sha256
(base32 "19l2pp1c64ansr89l3cqh19jdi2ixhssdzx0vz4n6r52a6i281is"))))
(build-system python-build-system)
(package (inherit python-pep8)
(version "1.5.7")
(source
- (origin
- (method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/p/pep8/pep8-"
- version
- ".tar.gz"))
- (sha256
- (base32
- "12b9bbdbwnspxgak14xg58c130x2n0blxzlms5jn2dszn8qj3d0m"))))
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pep8" version))
+ (sha256
+ (base32
+ "12b9bbdbwnspxgak14xg58c130x2n0blxzlms5jn2dszn8qj3d0m"))))
(arguments
;; XXX Tests not compatible with Python 3.5.
'(#:tests? #f))))
(define-public python-entrypoints
(package
(name "python-entrypoints")
- (version "0.2.3")
+ (version "0.3")
(source
(origin
(method url-fetch)
- (uri (string-append "https://github.com/takluyver/entrypoints/archive/"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (uri (pypi-uri "entrypoints" version))
(sha256
(base32
- "1pdvgfr5bxyvnfvxbsd3zi0dh3il71pc4k6rinx6zpps91b84a56"))))
+ "0lc4si3xb7hza424414rdqdc3vng3kcrph8jbvjqb32spqddf3f7"))))
(build-system python-build-system)
;; The package does not come with a setup.py file, so we have to generate
;; one ourselves.
(define-public python-jedi
(package
(name "python-jedi")
- (version "0.13.1")
+ (version "0.13.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "jedi" version))
(sha256
(base32
- "0j11q42g5vjkyhhjpyy8nb0gdxs78m3rpjai7p1hvgpyl9rkyjdp"))))
+ "1za944msp0f8x36qa8l309jhv0kzlsdh7r9nj3z12y8npnsh45sp"))))
(build-system python-build-system)
(arguments
- `( ;; Many tests are failing with Python 3.7.x as of version 0.13.1 (see:
+ `( ;; Many tests are failing with Python 3.7.x as of version 0.13.2 (see:
;; https://github.com/davidhalter/jedi/issues/1263)
#:tests? #f
#:phases
(setenv "PYTHONPATH"
(string-append (getcwd) "/build/lib:"
(getenv "PYTHONPATH")))
- (zero? (system* "py.test" "-vv" )))))))
+ (invoke "py.test" "-vv" ))))))
(native-inputs
`(("python-pytest" ,python-pytest)))
(home-page
(modify-phases %standard-phases
(replace 'check
(lambda _
- (zero? (system* "python" "test3.py")))))))
+ (invoke "python" "test3.py"))))))
(home-page "https://github.com/gfxmonk/termstyle")
(synopsis "Console text coloring for Python")
(description "This package provides console text coloring for Python.")
(setenv "PYTHONPATH"
(string-append (getcwd) "/build/lib:"
(getenv "PYTHONPATH")))
- (zero? (system* "python" "test/test_pbkdf2.py")))))))
+ (invoke "python" "test/test_pbkdf2.py"))))))
(propagated-inputs
`(("python-pycrypto" ,python-pycrypto))) ; optional
(home-page "https://www.dlitz.net/software/python-pbkdf2/")
(add-after 'install 'check
(lambda* (#:key inputs outputs #:allow-other-keys)
(add-installed-pythonpath inputs outputs)
- (zero? (system* "python" "test/testordereddict.py")))))))
+ (invoke "python" "test/testordereddict.py"))))))
(home-page "https://bitbucket.org/ruamel/ordereddict")
(synopsis "Version of dict that keeps keys in insertion order")
(description
;; Disable python3 tests
(substitute* "check"
(("python3") "# python3"))
- (zero? (system* "./check")))))))
+ (invoke "./check"))))))
(native-inputs
`(("python2-coverage-test-runner" ,python2-coverage-test-runner)
("python2-pep8" ,python2-pep8)))
;; and fails.
(delete 'check)
(add-before 'build 'check
- (lambda _
- (zero? (system* "make" "check")))))))
+ (lambda _ (invoke "make" "check"))))))
(home-page "https://liw.fi/ttystatus/")
(synopsis "Python library for showing progress reporting and
status updates on terminals")
;; and fails.
(delete 'check)
(add-before 'build 'check
- (lambda _
- (zero? (system* "make" "check")))))))
+ (lambda _ (invoke "make" "check"))))))
(native-inputs
`(("cmdtest" ,cmdtest)
("python2-coverage-test-runner" ,python2-coverage-test-runner)))
(setenv "PYTHONPATH" (string-append (getcwd)
":"
(getenv "PYTHONPATH")))
- (zero? (system* "py.test")))))))
+ (invoke "py.test"))))))
(propagated-inputs
`(("python-flask" ,python-flask)
("python-pyyaml" ,python-pyyaml)
(modify-phases %standard-phases
(replace 'build
(lambda* (#:key inputs #:allow-other-keys)
- (zero? (system* "python" "setup.py" "build"
- (string-append "--netcdf_prefix="
- (assoc-ref inputs "netcdf")))))))))
+ (invoke "python" "setup.py" "build"
+ (string-append "--netcdf_prefix="
+ (assoc-ref inputs "netcdf"))))))))
(home-page "https://bitbucket.org/khinsen/scientificpython")
(synopsis "Python modules for scientific computing")
(description "ScientificPython is a collection of Python modules that are
HCoop / jackhill / guix / guix.git / blobdiff