#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix build-system r)
+ #:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
#:use-module (gnu packages statistics)
+ #:use-module (gnu packages tls)
#:use-module (gnu packages web))
(define-public r-tidyverse
(define-public r-callr
(package
(name "r-callr")
- (version "2.0.3")
+ (version "2.0.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "callr" version))
(sha256
(base32
- "1k3mflgn10hcvy74y4pbigpv74zb66fz1phfd3c8isqmn88xbxzi"))))
+ "1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-assertthat" ,r-assertthat)
- ("r-crayon" ,r-crayon)
- ("r-debugme" ,r-debugme)
- ("r-r6" ,r-r6)
- ("r-testthat" ,r-testthat)))
+ `(("r-r6" ,r-r6)
+ ("r-processx" ,r-processx)))
(home-page "https://github.com/r-lib/callr#readme")
(synopsis "Call R from R")
(description
(define-public r-modelr
(package
(name "r-modelr")
- (version "0.1.1")
+ (version "0.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "modelr" version))
(sha256
(base32
- "1rqw0b583vp107zqp4h3wj51dvv4hb3wszfr1f5f48xassc53f95"))))
+ "09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
(define-public r-haven
(package
(name "r-haven")
- (version "1.1.1")
+ (version "1.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "haven" version))
(sha256
(base32
- "1fkcvsrnw8waqwggv0aydbvbi99x5kp9g78xfxj4w6s3xvdzcysz"))))
+ "0pp8xjf5lzqg1wr8cwxj4njx99vxwlflwjrd7jvyzwlfpwh7n1qa"))))
(build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
(propagated-inputs
`(("r-forcats" ,r-forcats)
("r-hms" ,r-hms)
(define-public r-amap
(package
(name "r-amap")
- (version "0.8-14")
+ (version "0.8-16")
(source (origin
(method url-fetch)
(uri (cran-uri "amap" version))
(sha256
(base32
- "1dz37z9v4zvyvqrs4xvpfv468jwvpxav60qn2w0049bw8llj6xdl"))))
+ "1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
(define-public r-abbyyr
(package
(name "r-abbyyr")
- (version "0.5.1")
+ (version "0.5.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "abbyyR" version))
(sha256
(base32
- "1s8zf18sh0s89vk3dl09fzrq50csmmfvmsanf5vfkv9n5lx6pklg"))))
+ "1jh1c1ad6mgw7brdh2isnza1qpjlfxnqr7jl76yd93axyfl76xjx"))))
(properties `((upstream-name . "abbyyR")))
(build-system r-build-system)
(propagated-inputs
error stream.")
(license license:expat)))
+(define-public r-pls
+ (package
+ (name "r-pls")
+ (version "2.6-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "pls" version))
+ (sha256
+ (base32
+ "15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx"))))
+ (build-system r-build-system)
+ (home-page "http://mevik.net/work/software/pls.html")
+ (synopsis "Partial Least Squares and Principal Component Regression")
+ (description
+ "The pls package implements multivariate regression methods: Partial Least
+Squares Regression (@dfn{PLSR}), Principal Component Regression (@dfn{PCR}), and
+Canonical Powered Partial Least Squares (@dfn{CPPLS}). It supports:
+
+@itemize
+@item several algorithms: the traditional orthogonal scores (@dfn{NIPALS}) PLS
+algorithm, kernel PLS, wide kernel PLS, Simpls, and PCR through @code{svd}
+@item multi-response models (or @dfn{PLS2})
+@item flexible cross-validation
+@item Jackknife variance estimates of regression coefficients
+@item extensive and flexible plots: scores, loadings, predictions, coefficients,
+(R)MSEP, R², and correlation loadings
+@item formula interface, modelled after @code{lm()}, with methods for predict,
+print, summary, plot, update, etc.
+@item extraction functions for coefficients, scores, and loadings
+@item MSEP, RMSEP, and R² estimates
+@item multiplicative scatter correction (@dfn{MSC})
+@end itemize\n")
+ (license license:gpl2)))
+
(define-public r-rcpp
(package
(name "r-rcpp")
- (version "0.12.16")
+ (version "0.12.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rcpp" version))
(sha256
- (base32 "1rm8hcy72p1jvxikvmkwg20pjqmvmfvqb45lfghmddp2adp67qfl"))))
+ (base32 "08xg8h3w25sdb3xr18g9pa0x8cirkdgljqapxmw56ss1j9fc89s2"))))
(build-system r-build-system)
(home-page "http://www.rcpp.org")
(synopsis "Seamless R and C++ integration")
(define-public r-globaloptions
(package
(name "r-globaloptions")
- (version "0.0.13")
+ (version "0.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "GlobalOptions" version))
(sha256
(base32
- "04jvha0mafslqz5nr99xjylg9n2x31gj9v4mgyg7qcmfwpqyw3ch"))))
+ "1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn"))))
(properties `((upstream-name . "GlobalOptions")))
(build-system r-build-system)
(home-page "https://github.com/jokergoo/GlobalOptions")
(define-public r-circlize
(package
(name "r-circlize")
- (version "0.4.3")
+ (version "0.4.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "circlize" version))
(sha256
(base32
- "0pg947gkryygikfbv6admx8gsg02b6g219j6a1sdnqij2908yxna"))))
+ "1l28maiqi549z191srncxgabx5fnvf0lld7smzwfd3vr5cx8nqww"))))
(build-system r-build-system)
(propagated-inputs
`(("r-colorspace" ,r-colorspace)
(define-public r-dendextend
(package
(name "r-dendextend")
- (version "1.7.0")
+ (version "1.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "dendextend" version))
(sha256
(base32
- "1krvqadnnh53xx5ql7bwzxaif6a317jzbs1m00gnc6jnj03rfl5d"))))
+ "1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fpc" ,r-fpc)
(define-public r-getoptlong
(package
(name "r-getoptlong")
- (version "0.1.6")
+ (version "0.1.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "GetoptLong" version))
(sha256
(base32
- "1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"))))
+ "1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr"))))
(properties `((upstream-name . "GetoptLong")))
(build-system r-build-system)
(inputs
(define-public r-ff
(package
(name "r-ff")
- (version "2.2-13")
+ (version "2.2-14")
(source
(origin
(method url-fetch)
(uri (cran-uri "ff" version))
(sha256
(base32
- "1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"))))
+ "1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"))))
(build-system r-build-system)
(propagated-inputs `(("r-bit" ,r-bit)))
(home-page "http://ff.r-forge.r-project.org/")
(define-public r-progress
(package
(name "r-progress")
- (version "1.1.2")
+ (version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "progress" version))
(sha256
(base32
- "1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"))))
+ "1rhwm0bdw30z3rvl0bn56xprjl3zrdy7150w4gl4bkvn2d6h9fav"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-prettyunits" ,r-prettyunits)
+ `(("r-crayon" ,r-crayon)
+ ("r-hms" ,r-hms)
+ ("r-prettyunits" ,r-prettyunits)
("r-r6" ,r-r6)))
(home-page "https://github.com/gaborcsardi/progress")
(synopsis "Terminal progress bars")
(define-public r-ggally
(package
(name "r-ggally")
- (version "1.3.2")
+ (version "1.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "GGally" version))
(sha256
(base32
- "02px7j28wzbhcgcwm2m0pxb6g7s5zvphl64ix55pkvag4m2ky57l"))))
+ "1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"))))
(properties `((upstream-name . "GGally")))
(build-system r-build-system)
+ (inputs
+ `(("libressl" ,libressl)))
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
("r-gtable" ,r-gtable)
("r-plyr" ,r-plyr)
("r-progress" ,r-progress)
("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-reshape" ,r-reshape)))
+ ("r-reshape" ,r-reshape)
+ ("r-rlang" ,r-rlang)))
(home-page "https://ggobi.github.io/ggally")
(synopsis "Extension to ggplot2")
(description
(define-public r-sp
(package
(name "r-sp")
- (version "1.2-7")
+ (version "1.3-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "sp" version))
(sha256
(base32
- "0q04yfgyjannsrzl0ppwcv0simrxrrbx2iz5mzaafc5x38zf0q3d"))))
+ "17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-extremes
(package
(name "r-extremes")
- (version "2.0-8")
+ (version "2.0-9")
(source
(origin
(method url-fetch)
(uri (cran-uri "extRemes" version))
(sha256
(base32
- "0pnpib3g2r9x8hfqhvq23j8m3jh62lp28ipnqir5yadnzv850gfm"))))
+ "0cpvcajk9xyy7662nqkyx333vrxpwsc5nmv0bfnhsbgijz5y0hvm"))))
(properties `((upstream-name . "extRemes")))
(build-system r-build-system)
(propagated-inputs
(define-public r-inline
(package
(name "r-inline")
- (version "0.3.14")
+ (version "0.3.15")
(source (origin
(method url-fetch)
(uri (cran-uri "inline" version))
(sha256
(base32
- "0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"))))
+ "0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/inline")
(synopsis "Functions to inline C, C++, Fortran function calls from R")
(define-public r-emdbook
(package
(name "r-emdbook")
- (version "1.3.9")
+ (version "1.3.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "emdbook" version))
(sha256
(base32
- "09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"))))
+ "0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bbmle" ,r-bbmle)
(define-public r-energy
(package
(name "r-energy")
- (version "1.7-2")
+ (version "1.7-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "energy" version))
(sha256
(base32
- "19c7bgjnm4ggf7w5mk64c5shkma3sa9wc8x117iqv7pk1bvvyy3p"))))
+ "12skvlridfq4jd5mh0yxl79ps0zi2xnlh4hsdgxad0gm7qky8awd"))))
(build-system r-build-system)
(propagated-inputs
`(("r-boot" ,r-boot)
(define-public r-ksamples
(package
(name "r-ksamples")
- (version "1.2-7")
+ (version "1.2-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "kSamples" version))
(sha256
(base32
- "0f19rjngk0lg6s8c6h5l55qpxp8sl4vxj3kpi05cizzncny9b9bj"))))
+ "15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr"))))
(properties `((upstream-name . "kSamples")))
(build-system r-build-system)
(propagated-inputs
(define-public r-cvst
(package
(name "r-cvst")
- (version "0.2-1")
+ (version "0.2-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "CVST" version))
(sha256
(base32
- "17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"))))
+ "05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5"))))
(properties `((upstream-name . "CVST")))
(build-system r-build-system)
(propagated-inputs
(define-public r-ddalpha
(package
(name "r-ddalpha")
- (version "1.3.2")
+ (version "1.3.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "ddalpha" version))
(sha256
(base32
- "1i2zcz20zy9xd42kdz09njbkq07mj2pp6f07z6dnwi5hrmvhbh9r"))))
+ "16cn0bhbaz9l9k4y79sv2d4f7pvs7dyka273y89igs5jvr99kfj1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
(define-public r-rcpproll
(package
(name "r-rcpproll")
- (version "0.2.2")
+ (version "0.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppRoll" version))
(sha256
(base32
- "19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"))))
+ "0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"))))
(properties `((upstream-name . "RcppRoll")))
(build-system r-build-system)
(propagated-inputs
(define-public r-recipes
(package
(name "r-recipes")
- (version "0.1.2")
+ (version "0.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "recipes" version))
(sha256
(base32
- "1car3a3mqn87pz049cbgkaayz86970mvkapk6al2k7jjw76306l9"))))
+ "1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
("r-lubridate" ,r-lubridate)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
+ ("r-pls" ,r-pls)
("r-purrr" ,r-purrr)
("r-rcpproll" ,r-rcpproll)
("r-rlang" ,r-rlang)
(define-public r-ggrepel
(package
(name "r-ggrepel")
- (version "0.7.0")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggrepel" version))
(sha256
(base32
- "0g0qfm6g71rv27423c1x846ipilnj213knyzrcr09vrpxc87l618"))))
+ "1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(define-public r-stringdist
(package
(name "r-stringdist")
- (version "0.9.4.7")
+ (version "0.9.5.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "stringdist" version))
(sha256
(base32
- "1qg80wmcrpkba9njvgjdg15bgw7ddks40kkfh5x61as9lhchy4i4"))))
+ "0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"))))
(build-system r-build-system)
(home-page "https://github.com/markvanderloo/stringdist")
(synopsis "Approximate string matching and string distance functions")
or between integer vectors representing generic sequences.")
(license license:gpl3+)))
+(define-public r-jomo
+ (package
+ (name "r-jomo")
+ (version "2.6-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "jomo" version))
+ (sha256
+ (base32
+ "0zyqwa2y08asj9xqwnngh6da1b9cqcx8pzc9cxwrmgnxd5nnsjb7"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-lme4" ,r-lme4)
+ ("r-survival" ,r-survival)))
+ (home-page "https://cran.r-project.org/web/packages/jomo/")
+ (synopsis "Multilevel Joint Modelling Multiple Imputation")
+ (description
+ "Similarly to Schafer's package pan, jomo is a package for multilevel
+joint modelling multiple imputation @url{Carpenter and Kenward (2013),
+http://doi.org/10.1002/9781119942283}. Novel aspects of jomo are the
+possibility of handling binary and categorical data through latent normal
+variables, the option to use cluster-specific covariance matrices and to
+impute compatibly with the substantive model.")
+ (license license:gpl2)))
+
+(define-public r-pan
+ (package
+ (name "r-pan")
+ (version "1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "pan" version))
+ (sha256
+ (base32
+ "1p3nigmhrnlch86g89hn7l0wvkifx3k9n59g0psi95yck43kza76"))))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/pan/")
+ (synopsis "Multiple imputation for multivariate panel or clustered data")
+ (description
+ "This package implements multiple imputation for multivariate panel or
+clustered data.")
+ (license license:gpl3)))
+
+(define-public r-mitml
+ (package
+ (name "r-mitml")
+ (version "0.3-5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mitml" version))
+ (sha256
+ (base32
+ "1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-haven" ,r-haven)
+ ("r-jomo" ,r-jomo)
+ ("r-pan" ,r-pan)))
+ (home-page "https://cran.r-project.org/web/packages/mitml/")
+ (synopsis "Tools for multiple imputation in multilevel modeling")
+ (description
+ "This package provides tools for multiple imputation of missing data in
+multilevel modeling. It includes a user-friendly interface to the packages
+pan and jomo, and several functions for visualization, data management and the
+analysis of multiply imputed data sets.")
+ (license license:gpl2+)))
+
(define-public r-mice
(package
(name "r-mice")
- (version "2.46.0")
+ (version "3.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mice" version))
(sha256
(base32
- "1gjvlk67zvgipfczsca8zqk97vg3sivv82hblsdwp14s7smhjcax"))))
+ "0xpn215yfzib4hw09cwilnyg9zbvq460njavfvm84mvgwbm25byi"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-lattice" ,r-lattice)
+ `(("r-broom" ,r-broom)
+ ("r-dplyr" ,r-dplyr)
+ ("r-lattice" ,r-lattice)
("r-mass" ,r-mass)
+ ("r-mitml" ,r-mitml)
("r-nnet" ,r-nnet)
("r-rcpp" ,r-rcpp)
+ ("r-rlang" ,r-rlang)
("r-rpart" ,r-rpart)
("r-survival" ,r-survival)))
(home-page "https://cran.r-project.org/web/packages/mice/")
(define-public r-hardyweinberg
(package
(name "r-hardyweinberg")
- (version "1.5.9")
+ (version "1.6.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "HardyWeinberg" version))
(sha256
(base32
- "0qk3lly5qczn61rj0q9xzscppspvk238yjgr4p71pkzkjhiv40jz"))))
+ "16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz"))))
(properties `((upstream-name . "HardyWeinberg")))
(build-system r-build-system)
(propagated-inputs
(define-public r-sm
(package
(name "r-sm")
- (version "2.2-5.4")
+ (version "2.2-5.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "sm" version))
(sha256
(base32
- "0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"))))
+ "1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3"))))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "http://www.stats.gla.ac.uk/~adrian/sm/")
(define-public r-ica
(package
(name "r-ica")
- (version "1.0-1")
+ (version "1.0-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ica" version))
(sha256
(base32
- "1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq"))))
+ "0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/ica/")
(synopsis "Independent component analysis")
(define-public r-dtw
(package
(name "r-dtw")
- (version "1.18-1")
+ (version "1.20-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "dtw" version))
(sha256
(base32
- "1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"))))
+ "1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"))))
(build-system r-build-system)
(propagated-inputs `(("r-proxy" ,r-proxy)))
(home-page "http://dtw.r-forge.r-project.org/")
(define-public r-ggjoy
(package
(name "r-ggjoy")
- (version "0.4.0")
+ (version "0.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggjoy" version))
(sha256
(base32
- "1s24zn7gmk52bvjjhanxby7rxbnc2yfl0nx5nv7x7z0zja8gg7nb"))))
+ "012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(define-public r-processx
(package
(name "r-processx")
- (version "2.0.0.1")
+ (version "3.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "processx" version))
(sha256
(base32
- "0yw23lp9xjvbpswzghkmjiayw7p19hbvmgv58k3i6b8g5nav4qcg"))))
+ "0wjr3cqwvnjxbvln25szffmkns5w0xysivdjr6chxap4nh515b0i"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-crayon" ,r-crayon)
- ("r-debugme" ,r-debugme)
- ("r-r6" ,r-r6)))
+ ("r-r6" ,r-r6)
+ ("r-testthat" ,r-testthat)))
(home-page "https://github.com/r-lib/processx3")
(synopsis "Execute and control system processes")
(description
(define-public r-tsp
(package
(name "r-tsp")
- (version "1.1-5")
+ (version "1.1-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "TSP" version))
(sha256
(base32
- "03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w"))))
+ "1ym97xl2icjpfkrici0wig29w06bb704hp51v7h5liygjlwpkhlc"))))
(properties `((upstream-name . "TSP")))
(build-system r-build-system)
(propagated-inputs `(("r-foreach" ,r-foreach)))
iVAT).")
(license license:gpl3)))
-(define-public r-heatmaply
- (package
- (name "r-heatmaply")
- (version "0.14.1")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "heatmaply" version))
- (sha256
- (base32
- "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-assertthat" ,r-assertthat)
- ("r-colorspace" ,r-colorspace)
- ("r-dendextend" ,r-dendextend)
- ("r-ggplot2" ,r-ggplot2)
- ("r-gplots" ,r-gplots)
- ("r-htmlwidgets" ,r-htmlwidgets)
- ("r-magrittr" ,r-magrittr)
- ("r-plotly" ,r-plotly)
- ("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-reshape2" ,r-reshape2)
- ("r-scales" ,r-scales)
- ("r-seriation" ,r-seriation)
- ("r-viridis" ,r-viridis)
- ("r-webshot" ,r-webshot)))
- (home-page "https://cran.r-project.org/package=heatmaply")
- (synopsis "Interactive cluster heat maps using plotly")
- (description "Heatmaps are used in many fields for visualizing
-observations, correlations, missing values patterns, and more. Interactive
-heatmaps allow the inspection of specific value by hovering the mouse over a
-cell, as well as zooming into a region of the heatmap by dragging a rectangle
-around the relevant area. This work is based on the @code{ggplot2} and
-@code{plotly.js} engine. It produces similar heatmaps as @code{heatmap.2} or
-@code{d3heatmap}, with the advantage of speed, the ability to zoom from the
-dendrogram panes, and the placing of factor variables in the sides of the
-heatmap.")
- (license (list license:gpl2 license:gpl3))))
-
(define-public r-xfun
(package
(name "r-xfun")
- (version "0.1")
+ (version "0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "xfun" version))
(sha256
(base32
- "1sm51gmwgw876d6d1q8smxmfgfh6zsnykfx8qp8z6jmh0fvd89pj"))))
+ "0zl22fcw90kdvzkjyf6vbmdmn9rz3bl51522fasvmykypffyng4a"))))
(build-system r-build-system)
(home-page "https://github.com/yihui/xfun")
(synopsis "Miscellaneous functions")
(define-public r-utf8
(package
(name "r-utf8")
- (version "1.1.3")
+ (version "1.1.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "utf8" version))
(sha256
(base32
- "03s4j6059q0nly68vpk6wy3p3f5ypakw93fj35kzd82b4z1r9cs3"))))
+ "0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"))))
(build-system r-build-system)
(home-page "https://github.com/patperry/r-utf8")
(synopsis "Unicode text processing")
(define-public r-pillar
(package
(name "r-pillar")
- (version "1.2.2")
+ (version "1.2.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "pillar" version))
(sha256
(base32
- "1kmqvny3rw4p5kgxz6mhqfpp7j3nnpp22dfai4kjrr2cfmj6wvb7"))))
+ "1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
(define-public r-statnet-common
(package
(name "r-statnet-common")
- (version "4.0.0")
+ (version "4.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "statnet.common" version))
(sha256
(base32
- "0yw6l5b4qv0jqlg4zyczas7m12a5pyqghs6ydxy2f6v6vxkijvi0"))))
+ "0h3g687214rlycca0fjrpy1lqbqsrginxqhmhl2mb2jinqqxcfgd"))))
(properties
`((upstream-name . "statnet.common")))
(build-system r-build-system)
+ (propagated-inputs
+ `(("r-coda" ,r-coda)))
(home-page "https://statnet.org")
(synopsis "R scripts and utilities used by the Statnet software")
(description "This package provides non-statistical utilities used by the
(define-public r-tseries
(package
(name "r-tseries")
- (version "0.10-44")
+ (version "0.10-45")
(source
(origin
(method url-fetch)
(uri (cran-uri "tseries" version))
(sha256
(base32
- "0nz6v76hsxcprpgf84al5r0p08sr9qacqal4adndz9wmg604l4ag"))))
+ "14s1glh5zzdvdl05a2z7ymhgf962svxf8xircghg5sc649lb33n0"))))
(build-system r-build-system)
(propagated-inputs
`(("r-quadprog" ,r-quadprog)
(define-public r-extradistr
(package
(name "r-extradistr")
- (version "1.8.8")
+ (version "1.8.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "extraDistr" version))
(sha256
(base32
- "0ywn4qwnamv36l1hw27l9y5kh3v6ha5781wsv2bz6szqjgg7kdb3"))))
+ "1fg8vjpal33y51iqzglk1yvy46d7js0l0wfbdy698lq8a06hq19p"))))
(properties `((upstream-name . "extraDistr")))
(build-system r-build-system)
(propagated-inputs
(define-public r-cubature
(package
(name "r-cubature")
- (version "1.3-11")
+ (version "1.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "cubature" version))
(sha256
(base32
- "06f6gsvbb732p80r6hxvzh4ik546icxfvx21dyh65ypmw3kgm64k"))))
+ "1hd23b8v2kpqp5gr0va8p2q7j8w9rik6ks7zrr4b8mb2mwrakk74"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)))
(define-public r-np
(package
(name "r-np")
- (version "0.60-6")
+ (version "0.60-8")
(source
(origin
(method url-fetch)
(uri (cran-uri "np" version))
(sha256
(base32
- "1y72x5j9j9mcgcy2xizk31gl843hfkngxdn8s4qw7yhw2qj79hsr"))))
+ "17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j"))))
(build-system r-build-system)
(propagated-inputs
`(("r-boot" ,r-boot)
("r-cubature" ,r-cubature)
+ ("r-quadprog" ,r-quadprog)
("r-quantreg" ,r-quantreg)))
(home-page "https://github.com/JeffreyRacine/R-Package-np")
(synopsis "Non-parametric kernel smoothing methods for mixed data types")
("r-ggplot2" ,r-ggplot2)
("r-gplots" ,r-gplots)
("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-knitr" ,r-knitr) ; needed for vignettes
("r-magrittr" ,r-magrittr)
("r-plotly" ,r-plotly)
("r-rcolorbrewer" ,r-rcolorbrewer)
(define-public r-shinyace
(package
(name "r-shinyace")
- (version "0.2.1")
+ (version "0.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "shinyAce" version))
(sha256
(base32
- "0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9"))))
+ "1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb"))))
(properties `((upstream-name . "shinyAce")))
(build-system r-build-system)
(propagated-inputs
- `(("r-shiny" ,r-shiny)))
+ `(("r-shiny" ,r-shiny)
+ ("r-jsonlite" ,r-jsonlite)))
(home-page "http://cran.r-project.org/web/packages/shinyAce")
(synopsis "Ace editor bindings for Shiny")
(description
(define-public r-radiant-data
(package
(name "r-radiant-data")
- (version "0.8.1")
+ (version "0.9.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "radiant.data" version))
(sha256
(base32
- "1ylina1jlrmvjkj8pwg0ip5jv1038vnzyckmf542xl7g11x8rvw1"))
+ "0mbxfqn79nphii4hb6kxl2wc0w0ra16y378rp2yw9a9926zdb7mb"))
(modules '((guix build utils)))
(snippet
'(begin
("r-curl" ,r-curl)
("r-dplyr" ,r-dplyr)
("r-dt" ,r-dt)
+ ("r-glue" ,r-glue)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-import" ,r-import)
("r-lubridate" ,r-lubridate)
("r-magrittr" ,r-magrittr)
("r-markdown" ,r-markdown)
- ("r-pryr" ,r-pryr)
+ ("r-plotly" ,r-plotly)
("r-psych" ,r-psych)
("r-readr" ,r-readr)
+ ("r-readxl" ,r-readxl)
+ ("r-rlang" ,r-rlang)
("r-rmarkdown" ,r-rmarkdown)
("r-rstudioapi" ,r-rstudioapi)
("r-scales" ,r-scales)
("r-shiny" ,r-shiny)
("r-shinyace" ,r-shinyace)
("r-tibble" ,r-tibble)
- ("r-tidyr" ,r-tidyr)))
+ ("r-tidyr" ,r-tidyr)
+ ("r-writexl" ,r-writexl)))
(home-page "https://github.com/radiant-rstats/radiant.data")
(synopsis "Data menu for Radiant: business analytics using R and Shiny")
(description
(define-public r-psych
(package
(name "r-psych")
- (version "1.8.3.3")
+ (version "1.8.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "psych" version))
(sha256
(base32
- "1zhp8j81nkzd65168zdw9ylypb9n07ajan21x0wqcn8jdbg970sg"))))
+ "1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-foreign" ,r-foreign)
(define-public r-prroc
(package
(name "r-prroc")
- (version "1.3")
+ (version "1.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "PRROC" version))
(sha256
(base32
- "03hvh92lq4i4w4mla9bvwrwb4626f4hvlxgdn57hamp70960vjyc"))))
+ "1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"))))
(properties `((upstream-name . "PRROC")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/PRROC/")
misclassification probabilities of different models.")
(license license:gpl3+)))
+(define-public r-zip
+ (package
+ (name "r-zip")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "zip" version))
+ (sha256
+ (base32
+ "0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/gaborcsardi/zip")
+ (synopsis "Cross-platform Zip compression")
+ (description
+ "This package provides a cross-platform Zip compression library for R.
+It is a replacement for the @code{zip} function, that does not require any
+additional external tools on any platform.")
+ (license license:cc0)))
+
(define-public r-openxlsx
(package
(name "r-openxlsx")
- (version "4.0.17")
+ (version "4.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "openxlsx" version))
(sha256
(base32
- "1mq4lasp12kc30sxcsmz9gskd114l8s7z7wd6svv2nm8qllrhsqi"))))
+ "1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"))))
(build-system r-build-system)
- (propagated-inputs `(("r-rcpp" ,r-rcpp)))
+ (propagated-inputs
+ `(("r-rcpp" ,r-rcpp)
+ ("r-zip" ,r-zip)))
(home-page "https://github.com/awalker89/openxlsx")
(synopsis "Read, write and edit XLSX files")
(description
(define-public r-later
(package
(name "r-later")
- (version "0.7.1")
+ (version "0.7.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "later" version))
(sha256
(base32
- "0z9jymmclkq9zcg1fd8p6gsnm5z1sn3n9pfz3bs03qjrkbizgrvz"))))
+ "04j2phymxgkk4hv9pfa5w3s98w5d7fvm11blrdhxmray4n618msw"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
to the cluster management tool @code{sfCluster}, but can also used without
it.")
(license license:gpl2+)))
+
+(define-public r-codedepends
+ (package
+ (name "r-codedepends")
+ (version "0.5-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "CodeDepends" version))
+ (sha256
+ (base32
+ "03p82s0abca2jimzqvxdzykfzca7c7fhm5xsjxybcksr4gggr5sc"))))
+ (properties `((upstream-name . "CodeDepends")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-codetools" ,r-codetools)
+ ("r-xml" ,r-xml)))
+ (home-page "http://cran.r-project.org/web/packages/CodeDepends")
+ (synopsis "Analysis of R code for reproducible research and code comprehension")
+ (description
+ "This package provides tools for analyzing R expressions or blocks of
+code and determining the dependencies between them. It focuses on R scripts,
+but can be used on the bodies of functions. There are many facilities
+including the ability to summarize or get a high-level view of code,
+determining dependencies between variables, code improvement suggestions.")
+ ;; Any version of the GPL
+ (license (list license:gpl2+ license:gpl3+))))
+
+(define-public r-rappdirs
+ (package
+ (name "r-rappdirs")
+ (version "0.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rappdirs" version))
+ (sha256
+ (base32
+ "0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/rappdirs/")
+ (synopsis "Determine where to save data, caches, and logs")
+ (description
+ "This package provides an easy way to determine which directories on the
+user's computer should be used to save data, caches and logs. It is a port of
+Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
+ (license license:expat)))
+
+(define-public r-learnr
+ (package
+ (name "r-learnr")
+ (version "0.9.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "learnr" version))
+ (sha256
+ (base32
+ "1z04c1djg7ghsl7p9ypc6k5m7snahnmjy10xmrzqfayx1wkfkn9n"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-evaluate" ,r-evaluate)
+ ("r-htmltools" ,r-htmltools)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-knitr" ,r-knitr)
+ ("r-markdown" ,r-markdown)
+ ("r-rappdirs" ,r-rappdirs)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-rprojroot" ,r-rprojroot)
+ ("r-shiny" ,r-shiny)
+ ("r-withr" ,r-withr)))
+ (home-page "https://rstudio.github.io/learnr/")
+ (synopsis "Interactive tutorials for R")
+ (description
+ "This package provides tools to create interactive tutorials using R
+Markdown. Use a combination of narrative, figures, videos, exercises, and
+quizzes to create self-paced tutorials for learning about R and R packages.")
+ (license license:asl2.0)))
+
+(define-public r-analytics
+ (package
+ (name "r-analytics")
+ (version "2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "analytics" version))
+ (sha256
+ (base32
+ "1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-car" ,r-car)
+ ("r-cluster" ,r-cluster)
+ ("r-fractal" ,r-fractal)
+ ("r-lmtest" ,r-lmtest)
+ ("r-mass" ,r-mass)
+ ("r-np" ,r-np)
+ ("r-powerplus" ,r-powerplus)
+ ("r-robust" ,r-robust)
+ ("r-trend" ,r-trend)
+ ("r-tsa" ,r-tsa)
+ ("r-urca" ,r-urca)))
+ (home-page "https://cran.r-project.org/web/packages/analytics/")
+ (synopsis "Collection of data analysis tools")
+ (description
+ "This package is a collection of data analysis tools. It includes tools
+for regression outlier detection in a fitted linear model, stationary
+bootstrap using a truncated geometric distribution, a comprehensive test for
+weak stationarity, column means by group, weighted biplots, and a heuristic to
+obtain a better initial configuration in non-metric MDS.")
+ (license license:gpl2)))
+
+(define-public r-reticulate
+ (package
+ (name "r-reticulate")
+ (version "1.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "reticulate" version))
+ (sha256
+ (base32
+ "0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr"))))
+ (build-system r-build-system)
+ (inputs `(("python" ,python)))
+ (propagated-inputs
+ `(("r-jsonlite" ,r-jsonlite)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/rstudio/reticulate")
+ (synopsis "R interface to Python")
+ (description
+ "This package provides an interface from R to Python modules, classes,
+and functions. When calling into Python, R data types are automatically
+converted to their equivalent Python types. When values are returned from
+Python to R they are converted back to R types.")
+ (license license:asl2.0)))
+
+(define-public r-bibtex
+ (package
+ (name "r-bibtex")
+ (version "0.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bibtex" version))
+ (sha256
+ (base32
+ "0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-stringr" ,r-stringr)))
+ (home-page "https://github.com/romainfrancois/bibtex")
+ (synopsis "Bibtex parser")
+ (description "This package provides a utility for R to parse a bibtex
+file.")
+ (license license:gpl2+)))
+
+(define-public r-ggseqlogo
+ (package
+ (name "r-ggseqlogo")
+ (version "0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggseqlogo" version))
+ (sha256
+ (base32
+ "13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-ggplot2" ,r-ggplot2)))
+ (home-page "https://github.com/omarwagih/ggseqlogo")
+ (synopsis "ggplot2 extension for drawing genetic sequence logos")
+ (description
+ "The range of functions provided by this package makes it possible to
+draw highly versatile genomic sequence logos. Features include, but are not
+limited to, modifying colour schemes and fonts used to draw the logo,
+generating multiple logo plots, and aiding the visualisation with annotations.
+Sequence logos can easily be combined with other ggplot2 plots.")
+ ;; Unspecified version of the LGPL.
+ (license license:lgpl3+)))
+
+(define-public r-ggsci
+ (package
+ (name "r-ggsci")
+ (version "2.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggsci" version))
+ (sha256
+ (base32
+ "0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-scales" ,r-scales)))
+ (home-page "https://nanx.me/ggsci/")
+ (synopsis "Scientific journal and sci-fi themed color palettes for ggplot2")
+ (description
+ "This package provides a collection of ggplot2 color palettes inspired by
+plots in scientific journals, data visualization libraries, science fiction
+movies, and TV shows.")
+ (license license:gpl3)))
+
+(define-public r-ggsignif
+ (package
+ (name "r-ggsignif")
+ (version "0.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggsignif" version))
+ (sha256
+ (base32
+ "1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)))
+ (home-page "https://github.com/const-ae/ggsignif")
+ (synopsis "Significance brackets for ggplot2")
+ (description
+ "Enrich your ggplots with group-wise comparisons. This package provides
+an easy way to indicate if two groups are significantly different. Commonly
+this is shown by a bracket on top connecting the groups of interest which
+itself is annotated with the level of significance. The package provides a
+single layer that takes the groups for comparison and the test as arguments
+and adds the annotation to the plot.")
+ (license license:gpl3)))
+
+(define-public r-ggpubr
+ (package
+ (name "r-ggpubr")
+ (version "0.1.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggpubr" version))
+ (sha256
+ (base32
+ "110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggrepel" ,r-ggrepel)
+ ("r-ggsci" ,r-ggsci)
+ ("r-ggsignif" ,r-ggsignif)
+ ("r-gridextra" ,r-gridextra)
+ ("r-magrittr" ,r-magrittr)
+ ("r-purrr" ,r-purrr)
+ ("r-scales" ,r-scales)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "http://www.sthda.com/english/rpkgs/ggpubr")
+ (synopsis "ggplot2-based publication-ready plots")
+ (description
+ "The ggplot2 package is an excellent and flexible package for elegant
+data visualization in R. However the default generated plots require some
+formatting before we can send them for publication. The ggpubr package
+provides some easy-to-use functions for creating and customizing ggplot2-based
+publication-ready plots.")
+ (license license:gpl2)))
+
+(define-public r-ellipse
+ (package
+ (name "r-ellipse")
+ (version "0.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ellipse" version))
+ (sha256
+ (base32
+ "0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/ellipse/")
+ (synopsis "Functions for drawing ellipses and ellipse-like confidence regions")
+ (description
+ "This package contains various routines for drawing ellipses and
+ellipse-like confidence regions, implementing the plots described in Murdoch
+and Chow (1996), A graphical display of large correlation matrices, The
+American Statistician 50, 178-180. There are also routines implementing the
+profile plots described in Bates and Watts (1988), Nonlinear Regression
+Analysis and its Applications.")
+ (license license:gpl2+)))
+
+(define-public r-flashclust
+ (package
+ (name "r-flashclust")
+ (version "1.01-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "flashClust" version))
+ (sha256
+ (base32
+ "0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"))))
+ (properties `((upstream-name . "flashClust")))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/flashClust/")
+ (synopsis "Implementation of optimal hierarchical clustering")
+ (description
+ "This package provides a fast implementation of hierarchical
+clustering.")
+ (license license:gpl2+)))
+
+(define-public r-factominer
+ (package
+ (name "r-factominer")
+ (version "1.41")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "FactoMineR" version))
+ (sha256
+ (base32
+ "1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"))))
+ (properties `((upstream-name . "FactoMineR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-car" ,r-car)
+ ("r-cluster" ,r-cluster)
+ ("r-ellipse" ,r-ellipse)
+ ("r-flashclust" ,r-flashclust)
+ ("r-lattice" ,r-lattice)
+ ("r-leaps" ,r-leaps)
+ ("r-mass" ,r-mass)
+ ("r-scatterplot3d" ,r-scatterplot3d)))
+ (home-page "http://factominer.free.fr")
+ (synopsis "Multivariate exploratory data analysis and data mining")
+ (description
+ "This package provides exploratory data analysis methods to summarize,
+visualize and describe datasets. The main principal component methods are
+available, those with the largest potential in terms of applications:
+principal component analysis (PCA) when variables are quantitative,
+correspondence analysis (CA) and multiple correspondence analysis (MCA) when
+variables are categorical, Multiple Factor Analysis when variables are
+structured in groups, etc. and hierarchical cluster analysis.")
+ (license license:gpl2+)))
+
+(define-public r-factoextra
+ (package
+ (name "r-factoextra")
+ (version "1.0.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "factoextra" version))
+ (sha256
+ (base32
+ "1l6m8k7qhdw8ndar8nhmym0lfyd1i2iszl1cicjax0vq23ss6xw1"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-cluster" ,r-cluster)
+ ("r-dendextend" ,r-dendextend)
+ ("r-factominer" ,r-factominer)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggpubr" ,r-ggpubr)
+ ("r-ggrepel" ,r-ggrepel)
+ ("r-reshape2" ,r-reshape2)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "http://www.sthda.com/english/rpkgs/factoextra")
+ (synopsis "Extract and visualize the results of multivariate data analyses")
+ (description
+ "This package provides some easy-to-use functions to extract and
+visualize the output of multivariate data analyses, including
+@code{PCA} (Principal Component Analysis), @code{CA} (Correspondence
+Analysis), @code{MCA} (Multiple Correspondence Analysis), @code{FAMD} (Factor
+Analysis of Mixed Data), @code{MFA} (Multiple Factor Analysis) and
+@code{HMFA} (Hierarchical Multiple Factor Analysis) functions from different R
+packages. It contains also functions for simplifying some clustering analysis
+steps and provides ggplot2-based elegant data visualization.")
+ (license license:gpl2)))
+
+(define-public r-nbclust
+ (package
+ (name "r-nbclust")
+ (version "3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "NbClust" version))
+ (sha256
+ (base32
+ "1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"))))
+ (properties `((upstream-name . "NbClust")))
+ (build-system r-build-system)
+ (home-page "https://sites.google.com/site/malikacharrad/research/nbclust-package")
+ (synopsis "Determine the best number of clusters in a data set")
+ (description
+ "NbClust provides 30 indexes for determining the optimal number of
+clusters in a data set and offers the best clustering scheme from different
+results to the user.")
+ (license license:gpl2)))
+
+(define-public r-hdf5r
+ (package
+ (name "r-hdf5r")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "hdf5r" version))
+ (sha256
+ (base32
+ "1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva"))))
+ (build-system r-build-system)
+ (inputs
+ `(("hdf5" ,hdf5)
+ ("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-bit64" ,r-bit64)
+ ("r-r6" ,r-r6)))
+ (home-page "https://hhoeflin.github.io/hdf5r")
+ (synopsis "Interface to the HDF5 binary data format")
+ (description
+ "HDF5 is a data model, library and file format for storing and managing
+large amounts of data. This package provides a nearly feature complete,
+object oriented wrapper for the HDF5 API using R6 classes. Additionally,
+functionality is added so that HDF5 objects behave very similar to their
+corresponding R counterparts.")
+ (license license:asl2.0)))
+
+(define-public r-writexl
+ (package
+ (name "r-writexl")
+ (version "1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "writexl" version))
+ (sha256
+ (base32
+ "0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf"))))
+ (build-system r-build-system)
+ (inputs `(("zlib" ,zlib)))
+ (home-page "https://github.com/ropensci/writexl")
+ (synopsis "Export data frames to xlsx format")
+ (description
+ "This package provides a data frame to xlsx exporter based on
+libxlsxwriter.")
+ (license license:bsd-2)))
HCoop / jackhill / guix / guix.git / blobdiff