-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages julia)
- #:use-module ((guix licenses) #:prefix license:)
- #:use-module (guix packages)
- #:use-module (guix download)
- #:use-module (guix utils)
- #:use-module (guix git-download)
- #:use-module (guix build-system gnu)
- #:use-module (gnu packages)
- #:use-module (gnu packages algebra)
- #:use-module (gnu packages base)
- #:use-module (gnu packages compression)
- #:use-module (gnu packages elf)
- #:use-module (gnu packages gcc)
- #:use-module (gnu packages llvm)
- #:use-module (gnu packages libevent)
- #:use-module (gnu packages libunwind)
- #:use-module (gnu packages maths)
- #:use-module (gnu packages multiprecision) ; mpfr
- #:use-module (gnu packages pcre)
- #:use-module (gnu packages perl)
- #:use-module (gnu packages pkg-config)
- #:use-module (gnu packages python)
- #:use-module (gnu packages textutils)
- #:use-module (gnu packages tls)
- #:use-module (gnu packages version-control)
- #:use-module (gnu packages wget)
- #:use-module (ice-9 match))
-
-(define libuv-julia
- (let ((commit "52d72a52cc7ccd570929990f010ed16e2ec604c8")
- (revision "5"))
- (package (inherit libuv)
- (name "libuv-julia")
- (version (string-append "1.9.0-" revision "." (string-take commit 8)))
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/JuliaLang/libuv.git")
- (commit commit)))
- (file-name (string-append name "-" version "-checkout"))
- (sha256
- (base32
- "1daxh6ci6q7znxxajr3bm16dd53ragm0d681wf4kzg542qnjq3lh"))))
- (build-system gnu-build-system)
- (arguments
- (substitute-keyword-arguments (package-arguments libuv)
- ((#:phases phases)
- `(modify-phases ,phases
- (delete 'autogen)))))
- (home-page "https://github.com/JuliaLang/libuv"))))
-
-(define libunwind-for-julia
- (package
- (inherit libunwind)
- (version "1.1-julia2")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://s3.amazonaws.com/julialang/src/"
- "libunwind-" version ".tar.gz"))
- (sha256
- (base32
- "0499x7sg2v18a6cry6l8y713cgmic0adnjph8i0xr1db9p7n8qyv"))))))
-
-(define-public julia
- (package
- (name "julia")
- (version "0.6.0")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "https://github.com/JuliaLang/julia/releases/download/v"
- version "/julia-" version ".tar.gz"))
- (sha256
- (base32
- "0rd6lcc9sic10q1j3c6f9qr901i1c4554m93n2sz5b3mh37byqhw"))))
- (build-system gnu-build-system)
- (arguments
- `(#:test-target "test"
- #:modules ((ice-9 match)
- (guix build gnu-build-system)
- (guix build utils))
-
- ;; Do not strip binaries to keep support for full backtraces.
- ;; See https://github.com/JuliaLang/julia/issues/17831
- #:strip-binaries? #f
-
- ;; The DSOs use $ORIGIN to refer to each other, but (guix build
- ;; gremlin) doesn't support it yet, so skip this phase.
- #:validate-runpath? #f
-
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-after 'unpack 'prepare-deps
- (lambda* (#:key inputs #:allow-other-keys)
- (mkdir "deps/srccache")
- (copy-file (assoc-ref inputs "dsfmt")
- "deps/srccache/dsfmt-2.2.3.tar.gz")
- (copy-file (assoc-ref inputs "objconv")
- "deps/srccache/objconv.zip")
- (copy-file (assoc-ref inputs "suitesparse")
- "deps/srccache/SuiteSparse-4.4.5.tar.gz")
- (copy-file (string-append (assoc-ref inputs "virtualenv")
- "/bin/virtualenv")
- "julia-env")
- (copy-file (assoc-ref inputs "unicode-data")
- "doc/UnicodeData.txt")
- #t))
- ;; FIXME: Building the documentation requires Julia packages that
- ;; would be downloaded from the Internet. We should build them in a
- ;; separate build phase.
- (add-after 'unpack 'disable-documentation
- (lambda _
- (substitute* "Makefile"
- (("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line)
- (string-append line "\n"))
- (("src ui doc deps")
- "src ui deps"))
- #t))
- (add-before 'check 'set-home
- ;; Some tests require a home directory to be set.
- (lambda _ (setenv "HOME" "/tmp") #t))
- (add-after 'unpack 'hardcode-soname-map
- ;; ./src/runtime_ccall.cpp creates a map from library names to paths
- ;; using the output of "/sbin/ldconfig -p". Since ldconfig is not
- ;; used in Guix, we patch runtime_ccall.cpp to contain a static map.
- (lambda* (#:key inputs #:allow-other-keys)
- (use-modules (ice-9 match))
- (substitute* "src/runtime_ccall.cpp"
- ;; Patch out invocations of '/sbin/ldconfig' to avoid getting
- ;; error messages about missing '/sbin/ldconfig' on GuixSD.
- (("popen\\(.*ldconfig.*\\);")
- "NULL;\n")
-
- ;; Populate 'sonameMap'.
- (("jl_read_sonames.*;")
- (string-join
- (map (match-lambda
- ((input libname soname)
- (string-append
- "sonameMap[\"" libname "\"] = "
- "\"" (assoc-ref inputs input) "/lib/" soname "\";")))
- '(("libc" "libc" "libc.so.6")
- ("pcre2" "libpcre2-8" "libpcre2-8.so")
- ("mpfr" "libmpfr" "libmpfr.so")
- ("openblas" "libblas" "libopenblas.so")
- ("arpack-ng" "libarpack" "libarpack.so")
- ("lapack" "liblapack" "liblapack.so")
- ("libgit2" "libgit2" "libgit2.so")
- ("gmp" "libgmp" "libgmp.so")
- ("openlibm" "libopenlibm" "libopenlibm.so")
- ("openspecfun" "libopenspecfun" "libopenspecfun.so")
- ("fftw" "libfftw3" "libfftw3_threads.so")
- ("fftwf" "libfftw3f" "libfftw3f_threads.so"))))))
- (substitute* "base/fft/FFTW.jl"
- (("const libfftw = Base.libfftw_name")
- (string-append "const libfftw = \""
- (assoc-ref inputs "fftw") "/lib/libfftw3_threads.so"
- "\""))
- (("const libfftwf = Base.libfftwf_name")
- (string-append "const libfftwf = \""
- (assoc-ref inputs "fftwf") "/lib/libfftw3f_threads.so"
- "\"")))
- (substitute* "base/math.jl"
- (("const libm = Base.libm_name")
- (string-append "const libm = \""
- (assoc-ref inputs "openlibm")
- "/lib/libopenlibm.so"
- "\""))
- (("const openspecfun = \"libopenspecfun\"")
- (string-append "const openspecfun = \""
- (assoc-ref inputs "openspecfun")
- "/lib/libopenspecfun.so"
- "\"")))
- (substitute* "base/pcre.jl"
- (("const PCRE_LIB = \"libpcre2-8\"")
- (string-append "const PCRE_LIB = \""
- (assoc-ref inputs "pcre2")
- "/lib/libpcre2-8.so" "\"")))
- #t))
- (add-before 'build 'fix-include-and-link-paths
- (lambda* (#:key inputs #:allow-other-keys)
- ;; LIBUTF8PROC is a linker flag, not a build target. It is
- ;; included in the LIBFILES_* variable which is used as a
- ;; collection of build targets and a list of libraries to link
- ;; against.
- (substitute* "src/flisp/Makefile"
- (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)")
- "$(BUILDDIR)/$(EXENAME): $(OBJS) $(LLT_release)")
- (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug: \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)")
- "$(BUILDDIR)/$(EXENAME)-debug: $(DOBJS) $(LLT_debug)"))
-
- ;; The REPL must be linked with libuv.
- (substitute* "ui/Makefile"
- (("JLDFLAGS \\+= ")
- (string-append "JLDFLAGS += "
- (assoc-ref %build-inputs "libuv")
- "/lib/libuv.so ")))
-
- (substitute* "base/Makefile"
- (("\\$\\(build_includedir\\)/uv-errno.h")
- (string-append (assoc-ref inputs "libuv")
- "/include/uv-errno.h")))
- #t))
- (add-before 'build 'replace-default-shell
- (lambda _
- (substitute* "base/client.jl"
- (("/bin/sh") (which "sh")))
- #t))
- (add-after 'unpack 'hardcode-paths
- (lambda _
- (substitute* "base/interactiveutil.jl"
- (("`which") (string-append "`" (which "which")))
- (("`wget") (string-append "`" (which "wget"))))
- #t))
- (add-before 'check 'disable-broken-tests
- (lambda _
- ;; Adjust expected error messages to match what current libgit2
- ;; provides.
- (substitute* "test/libgit2.jl"
- (("Invalid Content-Type") "invalid Content-Type")
- (("Failed to resolve path") "failed to resolve path"))
-
- (substitute* "test/choosetests.jl"
- ;; These tests fail, probably because some of the input
- ;; binaries have been stripped and thus backtraces don't look
- ;; as expected.
- (("\"backtrace\",") "")
- (("\"compile\",") "")
- (("\"replutil\",") "")
- (("\"cmdlineargs\",") "")
- ;; FIXME: This test fails with the following error:
- ;; Error in testset file:
- ;; Test Failed
- ;; Expression: download("ba\0d", "good")
- ;; Expected: ArgumentError
- ;; Thrown: Base.UVError
- (("\"file\",") ""))
- #t)))
- #:make-flags
- (list
- (string-append "prefix=" (assoc-ref %outputs "out"))
-
- ;; Passing the MARCH flag is necessary to build binary substitutes for
- ;; the supported architectures.
- ,(match (or (%current-target-system)
- (%current-system))
- ("x86_64-linux" "MARCH=x86-64")
- ("i686-linux" "MARCH=pentium4")
- ("aarch64-linux" "MARCH=armv8-a")
- ;; Prevent errors when querying this package on unsupported
- ;; platforms, e.g. when running "guix package --search="
- (_ "MARCH=UNSUPPORTED"))
-
- "CONFIG_SHELL=bash" ;needed to build bundled libraries
- "USE_SYSTEM_DSFMT=0" ;not packaged for Guix and upstream has no
- ;build system for a shared library.
- "USE_SYSTEM_LAPACK=1"
- "USE_SYSTEM_BLAS=1"
- "USE_BLAS64=0" ;needed when USE_SYSTEM_BLAS=1
-
- "USE_SYSTEM_FFTW=1"
- "LIBFFTWNAME=libfftw3"
- "LIBFFTWFNAME=libfftw3f"
-
- ;; TODO: Suitesparse does not install shared libraries, so we cannot
- ;; use the suitesparse package.
- ;; "USE_SYSTEM_SUITESPARSE=1"
- ;; (string-append "SUITESPARSE_INC=-I "
- ;; (assoc-ref %build-inputs "suitesparse")
- ;; "/include")
-
- "USE_GPL_LIBS=1" ;proudly
- "USE_SYSTEM_UTF8PROC=1"
- (string-append "UTF8PROC_INC="
- (assoc-ref %build-inputs "utf8proc")
- "/include")
- "USE_SYSTEM_LLVM=1"
- "USE_LLVM_SHLIB=0" ; FIXME: fails when set to 1
-
- "USE_SYSTEM_LIBUNWIND=1"
- "USE_SYSTEM_LIBUV=1"
- (string-append "LIBUV="
- (assoc-ref %build-inputs "libuv")
- "/lib/libuv.so")
- (string-append "LIBUV_INC="
- (assoc-ref %build-inputs "libuv")
- "/include")
- "USE_SYSTEM_PATCHELF=1"
- "USE_SYSTEM_PCRE=1"
- "USE_SYSTEM_OPENLIBM=1"
- "USE_SYSTEM_GMP=1"
- "USE_SYSTEM_MPFR=1"
- "USE_SYSTEM_ARPACK=1"
- "USE_SYSTEM_LIBGIT2=1"
- "USE_SYSTEM_OPENSPECFUN=1")))
- (inputs
- `(("llvm" ,llvm)
-
- ;; The bundled version is 3.3.0 so stick to that version. With other
- ;; versions, we get test failures in 'linalg/arnoldi' as described in
- ;; <https://bugs.gnu.org/30282>.
- ("arpack-ng" ,arpack-ng-3.3.0)
-
- ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like
- ("lapack" ,lapack)
- ("openblas" ,openblas) ;Julia does not build with Atlas
- ("libunwind" ,libunwind-for-julia)
- ("openlibm" ,openlibm)
- ("openspecfun" ,openspecfun)
- ("libgit2" ,libgit2)
- ("fftw" ,fftw)
- ("fftwf" ,fftwf)
- ("fortran" ,gfortran)
- ("libuv" ,libuv-julia)
- ("pcre2" ,pcre2)
- ("utf8proc" ,utf8proc)
- ("mpfr" ,mpfr)
- ("wget" ,wget)
- ("which" ,which)
- ("zlib" ,zlib)
- ("gmp" ,gmp)
- ("virtualenv" ,python2-virtualenv)
- ;; FIXME: The following inputs are downloaded from upstream to allow us
- ;; to use the lightweight Julia release tarball. Ideally, these inputs
- ;; would eventually be replaced with proper Guix packages.
-
- ;; TODO: run "make -f contrib/repackage_system_suitesparse4.make" to copy static lib
- ("suitesparse"
- ,(origin
- (method url-fetch)
- (uri "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.5.tar.gz")
- (sha256
- (base32
- "1jcbxb8jx5wlcixzf6n5dca2rcfx6mlcms1k2rl5gp67ay3bix43"))))
- ("objconv"
- ,(origin
- (method url-fetch)
- (uri "http://www.agner.org/optimize/objconv.zip")
- (sha256
- (base32
- "1fi7qa2sd9vb35dvkgripjf0fayzg2qmff215f8agfqfiwd1g8qs"))))
- ("dsfmt"
- ,(origin
- (method url-fetch)
- (uri (string-append
- "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/"
- "SFMT/dSFMT-src-2.2.3.tar.gz"))
- (sha256
- (base32
- "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42"))))))
- (native-inputs
- `(("openssl" ,openssl)
- ("perl" ,perl)
- ("patchelf" ,patchelf)
- ("pkg-config" ,pkg-config)
- ("python" ,python-2)
- ("unicode-data"
- ,(origin
- (method url-fetch)
- (uri "http://www.unicode.org/Public/9.0.0/ucd/UnicodeData.txt")
- (sha256
- (base32
- "13zfannnr6sa6s27ggvcvzmh133ndi38pfyxsssvjmw2s8ac9pv8"))))))
- ;; Julia is not officially released for ARM and MIPS.
- ;; See https://github.com/JuliaLang/julia/issues/10639
- (supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux"))
- (home-page "http://julialang.org/")
- (synopsis "High-performance dynamic language for technical computing")
- (description
- "Julia is a high-level, high-performance dynamic programming language for
-technical computing, with syntax that is familiar to users of other technical
-computing environments. It provides a sophisticated compiler, distributed
-parallel execution, numerical accuracy, and an extensive mathematical function
-library.")
- (license license:expat)))
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2020 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages julia)
+ #:use-module ((guix licenses) #:prefix license:)
+ #:use-module (guix packages)
+ #:use-module (guix download)
+ #:use-module (guix utils)
+ #:use-module (guix git-download)
+ #:use-module (guix build-system gnu)
+ #:use-module (gnu packages)
+ #:use-module (gnu packages algebra)
+ #:use-module (gnu packages base)
+ #:use-module (gnu packages compression)
+ #:use-module (gnu packages curl)
+ #:use-module (gnu packages elf)
+ #:use-module (gnu packages gcc)
+ #:use-module (gnu packages llvm)
+ #:use-module (gnu packages libevent)
+ #:use-module (gnu packages libunwind)
+ #:use-module (gnu packages maths)
+ #:use-module (gnu packages multiprecision) ; mpfr
+ #:use-module (gnu packages pcre)
+ #:use-module (gnu packages perl)
+ #:use-module (gnu packages pkg-config)
+ #:use-module (gnu packages python)
+ #:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages textutils)
+ #:use-module (gnu packages ssh)
+ #:use-module (gnu packages tls)
+ #:use-module (gnu packages version-control)
+ #:use-module (gnu packages wget)
+ #:use-module (ice-9 match))
+
+(define libuv-julia
+ (let ((commit "35b1504507a7a4168caae3d78db54d1121b121e1")
+ (revision "1"))
+ ;; When upgrading Julia, also upgrade this. Get the commit from
+ ;; https://github.com/JuliaLang/julia/blob/v1.4.1/deps/libuv.version
+ (package
+ (inherit libuv)
+ (name "libuv-julia")
+ (version (git-version "2.0.0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/JuliaLang/libuv")
+ (commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "0dn3v6fdp1z382pqg3nhjzk60l61ky9b65mfgaj29fv2da95rwjs"))))
+ (build-system gnu-build-system)
+ (arguments
+ (substitute-keyword-arguments (package-arguments libuv)
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (delete 'autogen)))))
+ (home-page "https://github.com/JuliaLang/libuv"))))
+
+(define libunwind-julia
+ ;; The Julia projects requires their patched version.
+ ;; Get from https://github.com/JuliaLang/julia/tree/master/deps/patches
+ (package
+ (inherit libunwind)
+ (name "libunwind-julia")
+ (version "1.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://savannah/libunwind/libunwind-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1y0l08k6ak1mqbfj6accf9s5686kljwgsl4vcqpxzk5n74wpm6a3"))
+ (patches
+ (list
+ (julia-patch "libunwind-prefer-extbl"
+ "0lr4dafw8qyfh8sw8hhbwkql1dlhqv8px7k81y2l20hhxfgnh2m1")
+ (julia-patch "libunwind-static-arm"
+ "1jk3bmiw61ypcchqkk1fyg5wh8wpggk574wxyfyaic870zh3lhgq")))))
+ (home-page "https://github.com/JuliaLang/tree/master/deps/")))
+
+(define (julia-patch-url version name)
+ (string-append "https://raw.githubusercontent.com/JuliaLang/julia/v" version
+ "/deps/patches/" name ".patch"))
+
+(define (julia-patch name sha)
+ (let ((version "1.4.1"))
+ (origin (method url-fetch)
+ (uri (julia-patch-url version name))
+ (sha256 (base32 sha))
+ (file-name name))))
+
+(define llvm-julia
+ (package
+ (inherit llvm-8)
+ (name "llvm-julia")
+ (source (origin
+ (inherit (package-source llvm-8))
+ ;; Those patches are inside the Julia source repo.
+ ;; They are _not_ Julia specific (https://github.com/julialang/julia#llvm)
+ ;; but they are required to build Julia.
+ ;; Discussion: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=919628
+ (patches
+ (map (match-lambda
+ ((name hash)
+ (julia-patch name hash)))
+ (list
+ '("llvm-7.0-D44650"
+ "1h55kkmkiisfj6sk956if2bcj9s0v6n5czn8dxb870vp5nccj3ir")
+ '("llvm-6.0-DISABLE_ABI_CHECKS"
+ "014fawd1ba7yckalypfld22zgic87x9nx3cim42zrwygywd36pyg")
+ '("llvm-6.0-NVPTX-addrspaces"
+ "1qdi2zmrjsrj0h84zv2vyly2hjcn4f67mfy0s1q353g4v4jkscqc")
+ '("llvm-D27629-AArch64-large_model_6.0.1"
+ "1qrshmlqvnasdyc158vfn3hnbigqph3lsq7acb9w8lwkpnnm2j4z")
+ '("llvm8-D34078-vectorize-fdiv"
+ "19spqc3xsazn1xs9gpcgv9ldadfkv49rmc5khl7sf1dlmhgi4602")
+ '("llvm7-D50010-VNCoercion-ni"
+ "18scg6aa036xa1508s7q93w9dvc5gp69fz6yl6fkh4yffw4gymw6")
+ '("llvm-8.0-D50167-scev-umin"
+ "0g9w2x8yryjdkihnrf18x0yi5bi14c5p8wffda1w732dr5ckzk94")
+ '("llvm-D57118-powerpc"
+ "0vxz5s0s9b625v1rv8lg1566yhxh1i91ydzmvy5s7njvzc7p19aw")
+ '("llvm8-WASM-addrspaces"
+ "1176agj9hh7csdm2lnklb42zcdsb3q6lx9jiyp2shn4p2678y76q")
+ '("llvm-exegesis-mingw"
+ "0ph1cj1j7arvf1xq2xcr7qf9g0cpdl14fincgr67vpi520zvd3vp")
+ '("llvm-test-plugin-mingw"
+ "12z738cnahbf6n381im7i0hxp1m6k9hrnfjlmq9sac46nxly9gnj")
+ '("llvm-8.0-D66401-mingw-reloc"
+ "15v3p5sznn979cfnd7gdn3nd701fd7xd5aks6lnj1mslvljlq3ls")
+ '("llvm7-revert-D44485"
+ "0f59kq3p3mpwsbmskypbi4zn01l6ig0x7v2rjp08k2r8z8m6fa8n")
+ '("llvm-8.0-D63688-wasm-isLocal"
+ "0i9wi5n63ip3802z6m7aj3p07hkqjlmp4vg4wq3xkf9f6w9rksab")
+ '("llvm-8.0-D55758-tablegen-cond"
+ "1l08mg7qigravi7plsq3yzya80fljnp95n8faddr29wbr2qr0655")
+ '("llvm-8.0-D59389-refactor-wmma"
+ "0rgrwk4xlwpk7yai2j7xadcfws93rmk2hhh44fysa88imvrbp478")
+ '("llvm-8.0-D59393-mma-ptx63-fix"
+ "094jcsxbcx9fljj623mgmc0rjpk12s2rs0di0ck0hakzhr8mbv5n")
+ '("llvm-8.0-D66657-codegen-degenerate"
+ "1n1ddx19h90bbpimdyd9dh8fsm6gb93xxyqm4ljkxa1k3cx2vm72")
+ '("llvm-8.0-D71495-vectorize-freduce"
+ "1zff08wvji9lnpskk4b3p5zyjsy5hhy23ynxjqlj9dw7jvvfrf0p")
+ '("llvm-8.0-D75072-SCEV-add-type"
+ "0amlyyndsc90ml2k6prdahf24q0j23nfmlbqf8gcqcxpl5sqq3i6")
+ '("llvm-8.0-D65174-limit-merge-stores"
+ "1ls5114fhgip9rbqabqc16mi367ra0k75ngc1vyqqhq1ghm9x7y9"))))))
+ (arguments
+ (substitute-keyword-arguments (package-arguments llvm-8)
+ ((#:configure-flags flags)
+ `(list ;; Taken from NixOS. Only way I could get libLLVM-6.0.so
+ "-DCMAKE_BUILD_TYPE=Release"
+
+ ;; Build a native compiler and the NVPTX backend (NVIDIA) since
+ ;; Julia insists on it, nothing more. This reduces build times and
+ ;; disk usage.
+ ,(string-append "-DLLVM_TARGETS_TO_BUILD=" (system->llvm-target))
+ "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=NVPTX"
+
+ "-DLLVM_INSTALL_UTILS=ON"
+ "-DLLVM_BUILD_TESTS=ON"
+ "-DLLVM_ENABLE_FFI=ON"
+ "-DLLVM_ENABLE_RTTI=ON"
+ ;; "-DLLVM_HOST_TRIPLE=${stdenv.hostPlatform.config}"
+ ;; "-DLLVM_DEFAULT_TARGET_TRIPLE=${stdenv.hostPlatform.config}"
+ ;; "-DLLVM_EXPERIMENTAL_TARGETS_TO_BUILD=WebAssembly"
+ "-DLLVM_ENABLE_DUMP=ON"
+ "-DLLVM_LINK_LLVM_DYLIB=ON"))))))
+
+(define-public libwhich
+ (package
+ (name "libwhich")
+ (version "1.1.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/vtjnash/libwhich")
+ ;; fixes linux-vdso.so related tests
+ (commit "87cffe10080c98e7b5786c5166e420bf1ada1d41")))
+ (file-name (string-append name "-" version "-checkout"))
+ (sha256
+ (base32
+ "1bpa0fcqpa3ai3hm8mz0p13bf76fsq53wsfcx5qw302zh22108xr"))))
+ (arguments
+ `(#:make-flags
+ (list "CC=gcc")
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'check 'set-ld-library-path
+ (lambda* (#:key inputs #:allow-other-keys)
+ (setenv "LD_LIBRARY_PATH"
+ (string-append (assoc-ref inputs "zlib") "/lib"))))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (install-file "libwhich" (string-append out "/bin")))
+ #t)))))
+ (native-inputs
+ ;; used for tests
+ `(("zlib" ,zlib)))
+ (build-system gnu-build-system)
+ (home-page "https://github.com/vtjnash/libwhich")
+ (synopsis "Like @code{which}, for dynamic libraries")
+ (description "@code{libwhich} is like @code{which}, but for dynamic
+libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
+ (license license:expat)))
+
+(define-public julia
+ (package
+ (name "julia")
+ (version "1.4.1")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/JuliaLang/julia/releases/download/v"
+ version "/julia-" version ".tar.gz"))
+ (sha256
+ (base32
+ "030aza3qj5zcinxbrbqgi7p64q6klwq2bhwccraarx7l0hg9lw3i"))
+ (patches
+ (search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:test-target "test"
+ #:modules ((ice-9 match)
+ (guix build gnu-build-system)
+ (guix build utils))
+
+ ;; Do not strip binaries to keep support for full backtraces.
+ ;; See https://github.com/JuliaLang/julia/issues/17831
+ #:strip-binaries? #f
+
+ ;; The DSOs use $ORIGIN to refer to each other, but (guix build
+ ;; gremlin) doesn't support it yet, so skip this phase.
+ #:validate-runpath? #f
+
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-after 'unpack 'prepare-deps
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; needed by libwhich
+ (setenv "LD_LIBRARY_PATH"
+ (string-join (map (lambda (pkg)
+ (string-append (assoc-ref inputs pkg)
+ "/lib"))
+ '("arpack-ng" "curl" "dsfmt"
+ "gmp" "lapack"
+ "libssh2" "libgit2"
+ "mbedtls" "mpfr"
+ "openblas" "openlibm" "pcre2"
+ "suitesparse"))
+ ":"))
+ #t))
+ ;; FIXME: Building the documentation requires Julia packages that
+ ;; would be downloaded from the Internet. We should build them in a
+ ;; separate build phase.
+ (add-after 'unpack 'disable-documentation
+ (lambda _
+ (substitute* "Makefile"
+ (("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line)
+ (string-append line "\n"))
+ (("src ui doc deps")
+ "src ui deps"))
+ #t))
+ (add-after 'unpack 'use-system-libwhich
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; don't build it
+ (substitute* "deps/Makefile"
+ (("DEP_LIBS \\+= libwhich") ""))
+ ;; call our version
+ (substitute* "base/Makefile"
+ (("\\$\\$\\(build_depsbindir\\)/libwhich")
+ (string-append (assoc-ref inputs "libwhich") "/bin/libwhich")))
+ #t))
+ (add-before 'check 'set-home
+ ;; Some tests require a home directory to be set.
+ (lambda _ (setenv "HOME" "/tmp") #t))
+ (add-before 'build 'fix-include-and-link-paths
+ (lambda* (#:key inputs #:allow-other-keys)
+ ;; LIBUTF8PROC is a linker flag, not a build target. It is
+ ;; included in the LIBFILES_* variable which is used as a
+ ;; collection of build targets and a list of libraries to link
+ ;; against.
+ (substitute* "src/flisp/Makefile"
+ (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)\\$\\(EXE\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)")
+ "$(BUILDDIR)/$(EXENAME)$(EXE): $(OBJS) $(LLT_release)")
+ (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug$(EXE): \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)")
+ "$(BUILDDIR)/$(EXENAME)-debug\\$\\(EXE\\): $(DOBJS) $(LLT_debug)"))
+
+ ;; The REPL must be linked with libuv.
+ (substitute* "ui/Makefile"
+ (("JLDFLAGS \\+= ")
+ (string-append "JLDFLAGS += "
+ (assoc-ref %build-inputs "libuv")
+ "/lib/libuv.so ")))
+
+ (substitute* "base/Makefile"
+ (("\\$\\(build_includedir\\)/uv/errno.h")
+ (string-append (assoc-ref inputs "libuv")
+ "/include/uv/errno.h")))
+ #t))
+ (add-before 'build 'replace-default-shell
+ (lambda _
+ (substitute* "base/client.jl"
+ (("/bin/sh") (which "sh")))
+ #t))
+ (add-before 'build 'fix-precompile
+ (lambda _
+ (substitute* "base/loading.jl"
+ (("something(Base.active_project(), \"\")") "\"\""))
+ #t))
+ (add-before 'check 'disable-broken-tests
+ (lambda _
+ (substitute* "test/choosetests.jl"
+ (("tests = testnames")
+ ;; Those failings are not deterministic. They depends on the
+ ;; running order. I think it depends on the number of
+ ;; runners, disabling it for now
+ ;; https://github.com/JuliaLang/julia/issues/34330
+ "tests = filter(e->!in(e,[\"backtrace\",\"exceptions\",\"precompile\",
+ \"client\",\"stacktraces\"]),
+ testnames)"))
+ ;; precompile test is broken, fixed in
+ ;; fed29f893544d1dc8f86444c65d632c68168d0f3
+ (substitute* "test/precompile.jl"
+ (("@test !isdefined\\(Base.Nothing.name.mt")
+ "# @test !isdefined(Base.Nothing.name.mt"))
+ ;; When HOME is not set, julia calls uv_os_homedir, which in
+ ;; turns call getpwuid_r. Add the HOME env variable to the
+ ;; external julia call to fix this
+ (substitute* "test/cmdlineargs.jl"
+ (("\"JULIA_PROJECT\"") "\"HOME\"=>\"/tmp\", \"JULIA_PROJECT\""))
+ ;; Marking the test as broken as it's a known bug:
+ ;; https://github.com/JuliaLang/julia/issues/32377
+ (substitute* "stdlib/REPL/test/replcompletions.jl"
+ (("@test count") "@test_broken count"))
+ ;; Dates has a similar bug:
+ ;; https://github.com/JuliaLang/julia/issues/34655
+ (substitute* "stdlib/Dates/test/io.jl"
+ (("\"Dates.Time") "\"Time"))
+ ;; Upstream bug I found when packaging
+ ;; https://github.com/JuliaLang/julia/issues/35785
+ (substitute* "test/file.jl"
+ (("@test dirname\\(t\\) == d") "@test_broken dirname(t) == d"))
+ #t))
+ (add-after 'install 'make-wrapper
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out"))
+ (bin (string-append out "/bin"))
+ (program "julia"))
+ (with-directory-excursion bin
+ (wrap-program program
+ `("JULIA_LOAD_PATH" ":" prefix
+ ("" "$JULIA_LOAD_PATH")))
+ (wrap-program program
+ `("JULIA_DEPOT_PATH" ":" prefix
+ ("" "$JULIA_DEPOT_PATH"))))
+ #t))))
+ #:make-flags
+ (list
+ (string-append "prefix=" (assoc-ref %outputs "out"))
+
+ ;; Passing the MARCH flag is necessary to build binary substitutes for
+ ;; the supported architectures.
+ ,(match (or (%current-target-system)
+ (%current-system))
+ ("x86_64-linux" "MARCH=x86-64")
+ ("i686-linux" "MARCH=pentium4")
+ ("aarch64-linux" "MARCH=armv8-a")
+ ;; Prevent errors when querying this package on unsupported
+ ;; platforms, e.g. when running "guix package --search="
+ (_ "MARCH=UNSUPPORTED"))
+
+ "CONFIG_SHELL=bash" ;needed to build bundled libraries
+ ;; list of "USE_SYSTEM_*" is here:
+ ;; https://github.com/JuliaLang/julia/blob/v1.3.1/Make.inc
+ "USE_SYSTEM_DSFMT=1"
+ "USE_SYSTEM_P7ZIP=1"
+ "USE_SYSTEM_LAPACK=1"
+ "USE_SYSTEM_BLAS=1"
+ "USE_BLAS64=0" ;needed when USE_SYSTEM_BLAS=1
+ "LIBBLAS=-lopenblas"
+ "LIBBLASNAME=libopenblas"
+
+ "USE_SYSTEM_SUITESPARSE=1"
+ (string-append "SUITESPARSE_INC=-I "
+ (assoc-ref %build-inputs "suitesparse")
+ "/include")
+ "USE_GPL_LIBS=1" ;proudly
+ "USE_SYSTEM_UTF8PROC=1"
+ (string-append "UTF8PROC_INC="
+ (assoc-ref %build-inputs "utf8proc")
+ "/include")
+ "USE_SYSTEM_LLVM=1"
+ "LLVM_VER=8.0.0"
+
+ "USE_LLVM_SHLIB=1"
+ "USE_SYSTEM_LIBUNWIND=1"
+ "USE_SYSTEM_LIBUV=1"
+ (string-append "LIBUV="
+ (assoc-ref %build-inputs "libuv")
+ "/lib/libuv.so")
+ (string-append "LIBUV_INC="
+ (assoc-ref %build-inputs "libuv")
+ "/include")
+ "USE_SYSTEM_PATCHELF=1"
+ "USE_SYSTEM_PCRE=1"
+ "USE_SYSTEM_OPENLIBM=1"
+ "USE_SYSTEM_MBEDTLS=1"
+ "USE_SYSTEM_LIBSSH2=1"
+ "USE_SYSTEM_GMP=1"
+ "USE_SYSTEM_MPFR=1"
+ "USE_SYSTEM_ARPACK=1"
+ "USE_SYSTEM_LIBGIT2=1"
+ "USE_SYSTEM_ZLIB=1")))
+ (inputs
+ `(("llvm" ,llvm-julia)
+ ("p7zip" ,p7zip)
+ ;; The bundled version is 3.3.0 so stick to that version. With other
+ ;; versions, we get test failures in 'linalg/arnoldi' as described in
+ ;; <https://bugs.gnu.org/30282>.
+ ("arpack-ng" ,arpack-ng-3.3.0)
+
+ ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like
+ ("lapack" ,lapack)
+ ("openblas" ,openblas) ;Julia does not build with Atlas
+ ("libunwind" ,libunwind-julia)
+ ("openlibm" ,openlibm)
+ ("mbedtls" ,mbedtls-apache)
+ ("curl" ,curl)
+ ("libgit2" ,libgit2-0.28)
+ ("libssh2" ,libssh2)
+ ("fortran" ,gfortran)
+ ("libuv" ,libuv-julia)
+ ("pcre2" ,pcre2)
+ ("utf8proc" ,utf8proc)
+ ("mpfr" ,mpfr)
+ ("wget" ,wget)
+ ("which" ,which)
+ ("zlib" ,zlib)
+ ("gmp" ,gmp)
+ ("suitesparse" ,suitesparse)
+ ;; Find dependencies versions here:
+ ;; https://raw.githubusercontent.com/JuliaLang/julia/v1.3.0/deps/Versions.make
+ ("libwhich" ,libwhich)
+ ("dsfmt" ,dsfmt)))
+ (native-inputs
+ `(("openssl" ,openssl)
+ ("perl" ,perl)
+ ("patchelf" ,patchelf)
+ ("pkg-config" ,pkg-config)
+ ("python" ,python-2)))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "JULIA_LOAD_PATH")
+ (files (list "share/julia/packages/")))
+ (search-path-specification
+ (variable "JULIA_DEPOT_PATH")
+ (files (list "share/julia/")))))
+ ;; Julia is not officially released for ARM and MIPS.
+ ;; See https://github.com/JuliaLang/julia/issues/10639
+ (supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux"))
+ (home-page "https://julialang.org/")
+ (synopsis "High-performance dynamic language for technical computing")
+ (description
+ "Julia is a high-level, high-performance dynamic programming language for
+technical computing, with syntax that is familiar to users of other technical
+computing environments. It provides a sophisticated compiler, distributed
+parallel execution, numerical accuracy, and an extensive mathematical function
+library.")
+ (license license:expat)))
HCoop / jackhill / guix / guix.git / blobdiff