;;; Copyright © 2018, 2019 Brett Gilio <brettg@gnu.org>
;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com>
;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
+;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de>
;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com>
;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com>
;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net>
;;; Copyright © 2020 Eric Brown <ecbrown@ericcbrown.com>
+;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
+;;; Copyright © 2020 Rafael Luque Leiva <rafael.luque@osoco.es>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (gnu packages web)
#:use-module (gnu packages xorg))
+(define-public r-rticles
+ (package
+ (name "r-rticles")
+ (version "0.14")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rticles" version))
+ (sha256
+ (base32
+ "1377fib4asazhhki4aajvld0wa35vd3zjvyl3lf2hjm2qk3vyak7"))))
+ (properties `((upstream-name . "rticles")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-knitr" ,r-knitr)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-tinytex" ,r-tinytex)
+ ("r-xfun" ,r-xfun)
+ ("r-yaml" ,r-yaml)))
+ (home-page "https://github.com/rstudio/rticles")
+ (synopsis "Article formats for R Markdown")
+ (description
+ "This package provides a suite of custom R Markdown formats and templates
+for authoring journal articles and conference submissions.")
+ (license license:gpl3)))
+
(define-public r-bezier
(package
(name "r-bezier")
(define-public r-jsonlite
(package
(name "r-jsonlite")
- (version "1.6.1")
+ (version "1.7.0")
(source (origin
(method url-fetch)
(uri (cran-uri "jsonlite" version))
(sha256
(base32
- "0xrki07wc17bkmhz0h7jay784j1sls2i9bf1mfpj6yl59791v4kl"))))
+ "1izfrk5yahsz6s69wanfspn72qdffjglbr5305akj72ig9fnladq"))))
(build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://arxiv.org/abs/1403.2805")
(synopsis "Robust, high performance JSON parser and generator for R")
(description
(define-public r-htmltable
(package
(name "r-htmltable")
- (version "2.0.0")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "htmlTable" version))
(sha256
- (base32
- "1a1al4kld7lrapc2i086crr78kbgrskahs221iy9v77x0nhin2q3"))))
+ (base32 "0ma52kajzxfg9w811d6ldhghzn9xhyr8bh7k5v265k82bzx7rac6"))))
(properties `((upstream-name . "htmlTable")))
(build-system r-build-system)
(propagated-inputs
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/rstudio/shiny.git")
+ (url "https://github.com/rstudio/shiny")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/fbreitwieser/sankeyD3.git")
+ (url "https://github.com/fbreitwieser/sankeyD3")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(define-public r-rcpp
(package
(name "r-rcpp")
- (version "1.0.4.6")
+ (version "1.0.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rcpp" version))
(sha256
- (base32 "00mk23zmrqn1c4mk9d6csjcbnl12wd7yicjk2ikmw5dyvdfngbs5"))))
+ (base32 "012wbj446k1wz6bp6bpf6h77ypvcsw69xvnax6qf6vyc7dj2qimq"))))
(build-system r-build-system)
(home-page "http://www.rcpp.org")
(synopsis "Seamless R and C++ integration")
(define-public r-getoptlong
(package
(name "r-getoptlong")
- (version "1.0.0")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "GetoptLong" version))
(sha256
(base32
- "1fswgy5j4xaipqs7nk7nzrl66vrchhxrk0w7hcsbyij3sxgn3z9j"))))
+ "1p89v2qzqfxyrmqzkv245716n9i4bllnq77a6gw811mgdhxbd51l"))))
(properties `((upstream-name . "GetoptLong")))
(build-system r-build-system)
(inputs
`(("r-bit" ,r-bit)
("r-fastmatch" ,r-fastmatch)
("r-ff" ,r-ff)))
- (home-page "http://github.com/edwindj/ffbase")
+ (home-page "https://github.com/edwindj/ffbase")
(synopsis "Basic statistical functions for package 'ff'")
(description
"This package extends the out of memory vectors of @code{ff} with
(define-public r-broom
(package
(name "r-broom")
- (version "0.5.6")
+ (version "0.7.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "broom" version))
(sha256
(base32
- "0da3jsb02xckrk6alznicn6l5lnyvdhc64qklyarnd77miqgc1hb"))))
+ "0bq8w1ckrladzck2g0mgiyjdrzi06kbqalk5q3pfvj1607fdv3d5"))))
(build-system r-build-system)
(propagated-inputs
`(("r-backports" ,r-backports)
("r-dplyr" ,r-dplyr)
+ ("r-ellipsis" ,r-ellipsis)
("r-generics" ,r-generics)
- ("r-nlme" ,r-nlme)
+ ("r-glue" ,r-glue)
("r-purrr" ,r-purrr)
- ("r-reshape2" ,r-reshape2)
+ ("r-rlang" ,r-rlang)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)))
(define-public r-recipes
(package
(name "r-recipes")
- (version "0.1.12")
+ (version "0.1.13")
(source
(origin
(method url-fetch)
(uri (cran-uri "recipes" version))
(sha256
(base32
- "0hbnrqgzazg401nk5fhljif7wnspicki179qf215r34y9wm8g3xj"))))
+ "1d3pmprkiz60w7lq5q4lpl5zlwf7fg7qghf7sq6xs1294w54gzbs"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
("r-glue" ,r-glue)
("r-gower" ,r-gower)
("r-ipred" ,r-ipred)
+ ("r-lifecycle" ,r-lifecycle)
("r-lubridate" ,r-lubridate)
("r-magrittr" ,r-magrittr)
("r-matrix" ,r-matrix)
("r-scales" ,r-scales)))
(native-inputs
`(("r-knitr" ,r-knitr))) ; for vignettes
- (home-page "http://github.com/slowkow/ggrepel")
+ (home-page "https://github.com/slowkow/ggrepel")
(synopsis "Repulsive text and label geometries for ggplot2")
(description
"This package provides text and label geometries for ggplot2 that help to
(define-public r-mice
(package
(name "r-mice")
- (version "3.9.0")
+ (version "3.10.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mice" version))
(sha256
(base32
- "1wycbc2iqp68gfzvqx1gsn5n1k1h4bg79dy8m5msqf226hy83ncn"))))
+ "0w81shmd2crpdlh66pnm27v4n06aayganq6kkalirln4c0ci2nyi"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
("r-dplyr" ,r-dplyr)
+ ("r-generics" ,r-generics)
("r-lattice" ,r-lattice)
("r-rcpp" ,r-rcpp)
("r-tidyr" ,r-tidyr)))
(define-public r-processx
(package
(name "r-processx")
- (version "3.4.2")
+ (version "3.4.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "processx" version))
(sha256
- (base32
- "02awswxq6wh3rl99dncw5n6c1xmd0v81xcdp2dfyi6vm6b3gz84l"))))
+ (base32 "07dhzijqnj2zkm3qrk4ppsv8wscn8ysdsjbidlg9zrbj1wcg4izj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ps" ,r-ps)
(define-public r-pillar
(package
(name "r-pillar")
- (version "1.4.4")
+ (version "1.4.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "pillar" version))
(sha256
(base32
- "0viymfp1rkr7ig3m1b016r75hk8qbr9cqsjc6c20ks9pm5svmsp1"))))
+ "01ck8ziqzjc9ibbj3g88siz1iw263dgl8jx6ryw2v50rjrr3y7fj"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
("r-crayon" ,r-crayon)
+ ("r-ellipsis" ,r-ellipsis)
("r-fansi" ,r-fansi)
+ ("r-lifecycle" ,r-lifecycle)
("r-rlang" ,r-rlang)
("r-utf8" ,r-utf8)
("r-vctrs" ,r-vctrs)))
(define-public r-cubature
(package
(name "r-cubature")
- (version "2.0.4")
+ (version "2.0.4.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "cubature" version))
(sha256
(base32
- "0jpyq8j7x06dpiz29w48av879ygldzgls9z810192hsymkmfaz6r"))))
+ "006la36gxdikvmdnq4ny7ik7r30id4z3b3fqsl57dpqwkpsbsgrq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/bnaras/cubature")
(synopsis "Adaptive multivariate integration over hypercubes")
(description
(define-public r-renv
(package
(name "r-renv")
- (version "0.10.0")
+ (version "0.11.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "renv" version))
(sha256
(base32
- "0yy24kq60dh9n68my132xhhkbnbs7q91z55b1yd6ymr7rxj32mif"))))
+ "0dd63jr240pg95a6p058s5kcclfmscihdy89v212msihmwvylwh3"))))
(properties `((upstream-name . "renv")))
(build-system r-build-system)
(native-inputs
(define-public r-ggpubr
(package
(name "r-ggpubr")
- (version "0.3.0")
+ (version "0.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggpubr" version))
(sha256
(base32
- "1dly74cnn8iq7vsgmcz0czszdsmg5cgzm4w3s0v30k4psmmzqbxq"))))
+ "0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cowplot" ,r-cowplot)
(define-public r-rdpack
(package
(name "r-rdpack")
- (version "0.11-1")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "Rdpack" version))
(sha256
(base32
- "080y15p2hl4jsq91ak2f1y2kx1iqq5c5wzyx3zyhjwp01cahy0jq"))))
+ "069yh9h57z3gjl5ih1r6wyiwmgmfzkpjxrpxg8mfq7y6zr1mynsw"))))
(properties `((upstream-name . "Rdpack")))
(build-system r-build-system)
(propagated-inputs
(define-public r-officer
(package
(name "r-officer")
- (version "0.3.11")
+ (version "0.3.12")
(source
(origin
(method url-fetch)
(uri (cran-uri "officer" version))
(sha256
(base32
- "0nwasra2kb5wplcim7n57kynwhyg4vsk3fz42mbpm0hig1lzl9pp"))))
+ "1wk9h6bz77s5j6lgksmlrmi1vyaa35c766gq6hgb1dp0dz0x342x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-magrittr" ,r-magrittr)
(define-public r-abn
(package
(name "r-abn")
- (version "2.2.1")
+ (version "2.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "abn" version))
(sha256
(base32
- "11nbg6dwvbj0ac7qvr203vzjnw5zc1a8cibb9l6rzzr7yfg16xzc"))))
+ "1wwnzv5yir8cyl0f0arxagbsg9ndgs0799m42wbjkpr8cg9sfdhc"))))
(build-system r-build-system)
(inputs
`(("gsl" ,gsl)))
(define-public r-sjlabelled
(package
(name "r-sjlabelled")
- (version "1.1.5")
+ (version "1.1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "sjlabelled" version))
(sha256
(base32
- "0grskmd7wrw31lkf85z6xz0bv246m6grvqkijvqi4q8zkl6p5vb3"))))
+ "0xvb0yi7c7wiiqjbnbisyb2cjinm11i373jacfv1yzyc9cznzyzq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-insight" ,r-insight)))
(define-public r-doby
(package
(name "r-doby")
- (version "4.6.6")
+ (version "4.6.7")
(source
(origin
(method url-fetch)
(uri (cran-uri "doBy" version))
(sha256
(base32
- "0wz1vmsf1545r1m42q88s675ncwvm8figjn7kzbngjn9aqck9qbq"))))
+ "16vg1aa272sfzyqxfb63fyis9hv6g5m3nmxxa6mk1gy0irqnl3jk"))))
(properties `((upstream-name . "doBy")))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
("r-deriv" ,r-deriv)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
("r-magrittr" ,r-magrittr)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
(define-public r-raster
(package
(name "r-raster")
- (version "3.1-5")
+ (version "3.3-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "raster" version))
(sha256
(base32
- "010sq00ijpmwac280ip9rryw0pxk0al8g675v2lc9rdrbgaj4rnv"))))
+ "144mva2dx7ffkq7z0fixr4z76ci1s4lizlyv5r7v07fd4nzg5hby"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)
(define-public r-magick
(package
(name "r-magick")
- (version "2.3")
+ (version "2.4.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "magick" version))
(sha256
(base32
- "182b4wahkq9q0scn99mql4vm9fp92nja0r5yizc4x9rjl492ahd8"))))
+ "1y1p2blkg0h6061ay7mdwssxbswgrc25raffp6d8d9cqhdmsa72s"))))
(build-system r-build-system)
(inputs
`(("imagemagick" ,imagemagick)
("r-magrittr" ,r-magrittr)
("r-rcpp" ,r-rcpp)))
(native-inputs
- `(("pkg-config" ,pkg-config)))
+ `(("pkg-config" ,pkg-config)
+ ("r-knitr" ,r-knitr)))
(home-page "https://github.com/ropensci/magick")
(synopsis "Advanced graphics and image-processing in R")
(description
(define-public r-emmeans
(package
(name "r-emmeans")
- (version "1.4.7")
+ (version "1.4.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "emmeans" version))
(sha256
(base32
- "0jh7l1rzsb2ihbnh4r4388kwm629z17rcapvdws1hnkklhr8j74k"))))
+ "0h884qn4cip03w0h5psrz5y9zkm2wppklrhdz2chm2xk13zqnq5k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-estimability" ,r-estimability)
(define-public r-glmmtmb
(package
(name "r-glmmtmb")
- (version "1.0.1")
+ (version "1.0.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmmTMB" version))
(sha256
(base32
- "0sdx1q7wc7895xh8747r4p0wkij0xjgn5ij62ipi9423zd0sr0mm"))))
+ "1a35hxcxz1cdm3zd5s7fyjaw2qs00hkacgr7h9130amygc1262ab"))))
(properties `((upstream-name . "glmmTMB")))
(build-system r-build-system)
(propagated-inputs
(define-public r-fs
(package
(name "r-fs")
- (version "1.4.1")
+ (version "1.4.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "fs" version))
(sha256
(base32
- "0kksig9pk8aid9l6r250na8z8j9919jvs20lj0s6m9bcybgh74df"))))
+ "09rpazjba9jy448j6rq989fw3wv3xhng7fn8p8gr22gyx0n0y1zr"))))
(build-system r-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)
(define-public r-rcppparallel
(package
(name "r-rcppparallel")
- (version "5.0.1")
+ (version "5.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "RcppParallel" version))
(sha256
(base32
- "029yyjnixggqmddazwxh1wqid1h7xpwpi4sgixyhbb4kmvqlwfkd"))))
+ "10bg4fw38m64dhy543rwq2nnjjc9y24iggk343xslrb3ij8018lc"))))
(properties `((upstream-name . "RcppParallel")))
(build-system r-build-system)
(home-page "https://rcppcore.github.io/RcppParallel/")
(define-public r-docopt
(package
(name "r-docopt")
- (version "0.6.1")
+ (version "0.7.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "docopt" version))
(sha256
(base32
- "06zknnd0c5s2y0hbddzdlr3m63ib783izpck6pgz7sjbab5pd068"))))
+ "1zxhwizs916qm5by7nfslqnarl2q5202xc2azlhrnzk0wj3khiwz"))))
(build-system r-build-system)
(home-page "https://github.com/docopt/docopt.R")
(synopsis "Command-line interface specification language")
(define-public r-future
(package
(name "r-future")
- (version "1.17.0")
+ (version "1.18.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "future" version))
(sha256
(base32
- "0d4y7gwcgqx2z0y6h5bh4lrz0m7b0inii5cjcq0kk8za762bi8rg"))))
+ "01fp8kgjf0k6c83q1w3dy9z90g72cc9d0004d1qw6n1j65nwxg4f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
(define-public r-future-apply
(package
(name "r-future-apply")
- (version "1.5.0")
+ (version "1.6.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "future.apply" version))
(sha256
(base32
- "095a681ngbwbp7v53ladwya7ar8fgwnlgr3r1yklf3vdxwd54xll"))))
+ "1zbfycjfvxnrigm6l2fd2zgnw96g0apiw426c73gkv3xv7bdy6ms"))))
(properties `((upstream-name . "future.apply")))
(build-system r-build-system)
(propagated-inputs
(define-public r-blockmodeling
(package
(name "r-blockmodeling")
- (version "0.3.6")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "blockmodeling" version))
(sha256
(base32
- "12paf76l3wlxad14bkxn37lw9rg6ka473m86wlcf3yhriw8kbaiz"))))
+ "1z4w2kq0id0gb5d0lqcdaw3clplhzywarkpvvx3drivdypzl237i"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
(define-public r-gamlss-dist
(package
(name "r-gamlss-dist")
- (version "5.1-6")
+ (version "5.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss.dist" version))
(sha256
- (base32 "1p904x0b07z4amaqdn2xhs7qzbq8lisr6lqc844s3pkxzmny7w1z"))))
+ (base32 "0nzgq3rnziy0i2zxn88hqy3pakpyin2m2csk9j3zg39si66c6wcq"))))
(properties `((upstream-name . "gamlss.dist")))
(build-system r-build-system)
(propagated-inputs `(("r-mass" ,r-mass)))
(define-public r-nonnest2
(package
(name "r-nonnest2")
- (version "0.5-4")
+ (version "0.5-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "nonnest2" version))
(sha256
(base32
- "07nr54hxdnc4k022nd4a2g9w9l9ym2ikfr978rrnqc71wx750i0z"))))
+ "1ddaqwx8i3ygwvxf11mc8xhgk4nkvnail99nr5szq8i168752zq2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-compquadform" ,r-compquadform)
("r-tibble" ,r-tibble)))
(native-inputs
`(("r-knitr" ,r-knitr)))
- (home-page "http://github.com/rnabioco/valr")
+ (home-page "https://github.com/rnabioco/valr")
(synopsis "Genome interval arithmetic in R")
(description
"This package enables you to read and manipulate genome intervals and
(define-public r-spdata
(package
(name "r-spdata")
- (version "0.3.5")
+ (version "0.3.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "spData" version))
(sha256
(base32
- "09l9j1vjbfyc8mikb8kliqmdjkg4xigq3zhdx98mv51flh5q87lh"))))
+ "1mlsqy9cbilfc80cbdlbgsngvzdkrd9yjdkxnw2b1gzxnj6jcqbs"))))
(properties `((upstream-name . "spData")))
(build-system r-build-system)
(propagated-inputs
(define-public r-spdep
(package
(name "r-spdep")
- (version "1.1-3")
+ (version "1.1-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "spdep" version))
(sha256
(base32
- "1f8cjffqqc6rnb3n4qym70ca6nz2kvrsd3g587wrqdr79nnbwnrk"))))
+ "0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7"))))
(build-system r-build-system)
(propagated-inputs
`(("r-boot" ,r-boot)
("r-sf" ,r-sf)
("r-sp" ,r-sp)
("r-spdata" ,r-spdata)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/r-spatial/spdep/")
(synopsis "Spatial dependence: weighting schemes, statistics and models")
(description
(define-public r-bookdown
(package
(name "r-bookdown")
- (version "0.19")
+ (version "0.20")
(source (origin
(method url-fetch)
(uri (cran-uri "bookdown" version))
(sha256
(base32
- "137l0cyzw9ij2l3zyk3mm1k2db9vhbax6c9y4rydvh4i9gka5vlq"))))
+ "0gnshkp1aj7f29sjkhzxn890hz39nwaqdln61x8apmrc658nacdg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-htmltools" ,r-htmltools)
(define-public r-rjava
(package
(name "r-rjava")
- (version "0.9-12")
+ (version "0.9-13")
(source
(origin
(method url-fetch)
(uri (cran-uri "rJava" version))
(sha256
(base32
- "03vv0pj6san03c51iyqsyb1rwh3097dfpl2s8iswzzmc7k3shj12"))))
+ "1x3mihyqzr61j52rwaqciw43mkjzmhib4s6qf57v6xj40ksqh5jv"))))
(properties `((upstream-name . "rJava")))
(build-system r-build-system)
(arguments
(define-public r-ggforce
(package
(name "r-ggforce")
- (version "0.3.1")
+ (version "0.3.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggforce" version))
(sha256
(base32
- "04926cqrda6psvy2nzkkw4czwyxdp7fnxg76byp14v12kgd72lm0"))))
+ "1lplxyq5bgx90dgaimhynpcywag1gp6vlsy7q52ay1nfc35qmkjc"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
function for computing a matrix of correlation p-values.")
(license license:gpl2)))
+;; This package includes minified JavaScript files. When upgrading please
+;; check that there are no new minified JavaScript files.
(define-public r-flexdashboard
(package
(name "r-flexdashboard")
- (version "0.5.1.1")
+ (version "0.5.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "flexdashboard" version))
(sha256
(base32
- "0fy3nbrr67zqgd44r2mc850s5sp0hzfcw3zqs15m8kxzj1aw067x"))))
+ "1bh759llp15fxrx2rwvxd8p3w84vjmkid32ism7zg49a127fjib4"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ ;; Delete bundled minified JavaScript files
+ (delete-file "inst/htmlwidgets/lib/raphael/raphael-2.1.4.min.js")
+ (delete-file "inst/www/sly/sly.min.js")
+ (delete-file "inst/www/stickytableheaders/jquery.stickytableheaders.min.js")
+ (delete-file "inst/www/prism/prism.js")
+ #t))))
(build-system r-build-system)
(arguments
`(#:modules ((guix build utils)
(for-each (lambda (source target)
(format #t "Processing ~a --> ~a~%"
source target)
- (delete-file target)
(let ((minified (open-pipe* OPEN_READ "uglify-js" source)))
(call-with-output-file target
(lambda (port)
(define-public r-ingredients
(package
(name "r-ingredients")
- (version "1.2.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ingredients" version))
(sha256
(base32
- "1q196y9xzn4wk44fa1bvh0hcbizgm93rwir82nyk31k5pgixk967"))))
+ "1mp1rgi3nnr8mjddpbyi24zvqcbihz0d8np2j13cbjc089n6jci8"))))
(properties `((upstream-name . "ingredients")))
(build-system r-build-system)
(propagated-inputs
classification and regression models.")
(license license:gpl3)))
+(define-public r-dae
+ (package
+ (name "r-dae")
+ (version "3.1-27")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "dae" version))
+ (sha256
+ (base32
+ "14q3cxhcz0zqjdkas0dl71k2bp5qwvb60gha47s78hdr38r46kml"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-plyr" ,r-plyr)))
+ (native-inputs
+ `(("r-r-rsp" ,r-r-rsp))) ; vignette builder
+ (home-page "http://chris.brien.name")
+ (synopsis "Functions useful in the design and ANOVA of experiments")
+ (description
+ "This package provides functions useful in the design and ANOVA of
+experiments. The content falls into the following groupings:
+
+@enumerate
+@item data,
+@item factor manipulation functions,
+@item design functions,
+@item ANOVA functions,
+@item matrix functions,
+@item projector and canonical efficiency functions, and
+@item miscellaneous functions.
+@end enumerate
+
+There is a vignette called @code{DesignNotes} describing how to use the design
+functions for randomizing and assessing designs. The ANOVA functions
+facilitate the extraction of information when the @code{Error} function has
+been used in the call to @code{aov}.")
+ (license license:gpl2)))
+
(define-public r-dalex
(package
(name "r-dalex")
- (version "1.2.1")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "DALEX" version))
(sha256
(base32
- "0lx8nasm1zgh1ckz8nw3ysp6xjv3dsj39hzhr6k3xhh6i8pm9rxk"))))
+ "1azbnykaddsfp2qmxmhpjz76zg78msxv6n2jqkq4gwbgqa5vdfd2"))))
(properties `((upstream-name . "DALEX")))
(build-system r-build-system)
(propagated-inputs
(define-public r-patchwork
(package
(name "r-patchwork")
- (version "1.0.0")
+ (version "1.0.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "patchwork" version))
(sha256
(base32
- "0qrwbcswh7ylrmghi17k6wk7w51cz6mcmvcyyd41hy3m2ywmkywb"))))
+ "0wm93a40idrkzn5hpnykhznvh7hdbfqw0dkzzn0zk83qlwyc9g02"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/MacoskoLab/liger.git")
+ (url "https://github.com/MacoskoLab/liger")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(define-public r-rgdal
(package
(name "r-rgdal")
- (version "1.5-10")
+ (version "1.5-12")
(source
(origin
(method url-fetch)
(uri (cran-uri "rgdal" version))
(sha256
- (base32 "02z7rhpizzmymiqpi90nm15bjdz0411bqlavlk0lhwxb42ilhif6"))))
+ (base32 "0jvb5ykp539mi0hqs05w4w8wz45blc4nvkhs70aqmzyx27hadfiq"))))
(properties `((upstream-name . "rgdal")))
(build-system r-build-system)
(inputs
(define-public r-mda
(package
(name "r-mda")
- (version "0.5")
+ (version "0.5-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "mda" version))
(sha256
(base32
- "01pjrz9xv1rx78ndy0x9dc32ws8brcvwyb500m1f0dqd42375vmx"))))
+ "1hq0zhhz9klmp4zcr1w8hyn7s1h9kfg57d2l2mfm7psx459j0krl"))))
(properties `((upstream-name . "mda")))
(build-system r-build-system)
(propagated-inputs `(("r-class" ,r-class)))
(define-public r-gamlss
(package
(name "r-gamlss")
- (version "5.1-6")
+ (version "5.1-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "gamlss" version))
(sha256
(base32
- "16b7ick1khvldbvfmmpw9cjs1vznnrisvifq7717fxzd8c9s5jdr"))))
+ "0ywqwsp4k6jgnicp1gdsglji61l5cnackl52700v8kmkk83bq4c8"))))
(properties `((upstream-name . "gamlss")))
(build-system r-build-system)
(propagated-inputs
(define-public r-quanteda
(package
(name "r-quanteda")
- (version "2.0.1")
+ (version "2.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "quanteda" version))
(sha256
(base32
- "0pym6vdzqbkyj87m3pla229092xvvx4j830x67qflxzzdmc9dzhz"))))
+ "0qxvm75g6r0d1clj8b19gjqwkfrqypapf4zysb8nyfbmn33h8xc7"))))
(properties `((upstream-name . "quanteda")))
(build-system r-build-system)
(propagated-inputs
`(("r-data-table" ,r-data-table)
+ ("r-digest" ,r-digest)
("r-extrafont" ,r-extrafont)
("r-fastmatch" ,r-fastmatch)
("r-ggplot2" ,r-ggplot2)
(define-public r-iheatmapr
(package
(name "r-iheatmapr")
- (version "0.4.12")
+ (version "0.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "iheatmapr" version))
(sha256
(base32
- "0s479j9l35xiss599vablxgvg6i2j9zq9sxphsq4vdk3bafg84bw"))))
+ "0s2lc088rq2siy2wzmg1y6nss68rs33mf7w2izqqmg6kbx6d7y9h"))))
(properties `((upstream-name . "iheatmapr")))
(build-system r-build-system)
(propagated-inputs
("r-jsonlite" ,r-jsonlite)
("r-knitr" ,r-knitr)
("r-magrittr" ,r-magrittr)
- ("r-plyr" ,r-plyr)
("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-s4vectors" ,r-s4vectors)
("r-scales" ,r-scales)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://docs.ropensci.org/iheatmapr")
(synopsis "Interactive, Complex Heatmaps")
(description
(define-public r-rstantools
(package
(name "r-rstantools")
- (version "2.0.0")
+ (version "2.1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rstantools" version))
(sha256
(base32
- "1il0pn4ksbdkska5fmhvgaicvwnnc6cs08g6ags9fj1xkjiqmrsa"))))
+ "0b9x8rzj3dr4m7yjx476nn42z22xd1xnw85m9frfwxy5ivg1any9"))))
(properties `((upstream-name . "rstantools")))
(build-system r-build-system)
(inputs `(("pandoc" ,ghc-pandoc)))
(propagated-inputs
`(("r-desc" ,r-desc)
- ("r-rcpp" ,r-rcpp)))
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcppparallel" ,r-rcppparallel)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://mc-stan.org/rstantools/")
(synopsis "Tools for developing R packages interfacing with Stan")
(description
(define-public r-loo
(package
(name "r-loo")
- (version "2.2.0")
+ (version "2.3.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "loo" version))
(sha256
- (base32
- "1hq1zcj76x55z9kic6cwf7mfq9pzqfbr341jbc9wp7x8ac4zcva6"))))
+ (base32 "12z0k8lhz0rxygs5lc7076nw6qhk0pda8nxf65hkinfrf4dy53fr"))))
(properties `((upstream-name . "loo")))
(build-system r-build-system)
(inputs
(propagated-inputs
`(("r-checkmate" ,r-checkmate)
("r-matrixstats" ,r-matrixstats)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://mc-stan.org/loo/")
(synopsis "Leave-One-Out cross-validation and WAIC for Bayesian models")
(description
(define-public r-rstan
(package
(name "r-rstan")
- (version "2.19.3")
+ (version "2.21.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rstan" version))
(sha256
(base32
- "128ndwjrhf8b1qvvqz4bl13qlm8718z9qs5ryc6gsdr3vk65s0np"))))
+ "0fxxh2jmrgfp98195qkqli1r9ni457vnjdvqm5l91j6aagkbk8zz"))))
(properties `((upstream-name . "rstan")))
(build-system r-build-system)
(arguments
#t)))))
(native-inputs
`(("tzdata" ,tzdata-for-tests)
- ("pandoc" ,ghc-pandoc)))
+ ("pandoc" ,ghc-pandoc)
+ ("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-bh" ,r-bh)
("r-ggplot2" ,r-ggplot2)
("r-pkgbuild" ,r-pkgbuild)
("r-rcpp" ,r-rcpp)
("r-rcppeigen" ,r-rcppeigen)
- ("r-stanheaders" ,r-stanheaders)))
+ ("r-rcppparallel" ,r-rcppparallel)
+ ("r-stanheaders" ,r-stanheaders)
+ ("r-v8" ,r-v8)))
(home-page "https://discourse.mc-stan.org/")
(synopsis "R interface to Stan")
(description
(define-public r-brms
(package
(name "r-brms")
- (version "2.13.0")
+ (version "2.13.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "brms" version))
(sha256
(base32
- "0vdncdawxawi16f326qrgy9jjjipmqdjxh741y9p7xdzd4fwaxx3"))))
+ "13gnc517yssvi2mnih5bln06hcbn4y80gd9h3szacs6n3mwpig5f"))))
(properties `((upstream-name . "brms")))
(build-system r-build-system)
(propagated-inputs
(define-public r-directlabels
(package
(name "r-directlabels")
- (version "2020.1.31")
+ (version "2020.6.17")
(source
(origin
(method url-fetch)
(uri (cran-uri "directlabels" version))
(sha256
(base32
- "08s1gnwp4bn8xahwjaq0f1qzhwh2dvybzhq3z7xyzn8cnyzmis6c"))))
+ "1b6v206kizz5rjw03chjvn40a7cqihjpk80h1h79z2x27hp1qi3f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-quadprog" ,r-quadprog)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "http://directlabels.r-forge.r-project.org/")
(synopsis "Direct labels for multicolor plots")
(description
and clustering large sequence datasets using fast alignment-free k-mer
counting and recursive k-means partitioning.")
(license license:gpl3)))
+
+(define-public r-shapforxgboost
+ (package
+ (name "r-shapforxgboost")
+ (version "0.0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "SHAPforxgboost" version))
+ (sha256
+ (base32
+ "0k6bg27wqnkzv82bcahbapmqhiz6rvnx81m23zbjw58c7lwshgnq"))))
+ (properties
+ `((upstream-name . "SHAPforxgboost")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bbmisc" ,r-bbmisc)
+ ("r-data-table" ,r-data-table)
+ ("r-ggextra" ,r-ggextra)
+ ("r-ggforce" ,r-ggforce)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggpubr" ,r-ggpubr)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-xgboost" ,r-xgboost)))
+ (home-page "https://github.com/liuyanguu/SHAPforxgboost")
+ (synopsis "SHAP Plots for XGBoost")
+ (description
+ "The aim of @code{SHAPforxgboost} is to aid in visual data investigations
+using @dfn{SHAP} (Shapley additive explanation) visualization plots for
+@code{XGBoost}. It provides summary plot, dependence plot, interaction plot,
+and force plot. It relies on the @code{XGBoost} package to produce SHAP
+values.")
+ (license license:expat)))
+
+(define-public r-rismed
+ (package
+ (name "r-rismed")
+ (version "2.1.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RISmed" version))
+ (sha256
+ (base32
+ "08dmkkxsmwp9b4h2g1bbx03cijn793fsnzkmbima8x9d42vxnm1l"))))
+ (properties `((upstream-name . "RISmed")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/RISmed")
+ (synopsis "Download content from NCBI databases")
+ (description
+ "This package provides a set of tools to extract bibliographic
+content from the National Center for Biotechnology Information (NCBI)
+databases, including PubMed. The name RISmed is a portmanteau of
+RIS (for Research Information Systems, a common tag format for
+bibliographic data) and PubMed.")
+ (license license:gpl2+)))
+
+(define-public r-semver
+ (package
+ (name "r-semver")
+ (version "0.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "semver" version))
+ (sha256
+ (base32
+ "10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"))))
+ (properties `((upstream-name . "semver")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-assertthat" ,r-assertthat)
+ ("r-rcpp" ,r-rcpp)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/johndharrison/semver")
+ (synopsis "Parser for Semantic Versioning 2.0.0")
+ (description
+ "This package provides tools and functions for parsing, rendering and
+operating on semantic version strings. Semantic versioning is a simple set of
+rules and requirements that dictate how version numbers are assigned and
+incremented as outlined at @url{http://semver.org}.")
+ (license license:expat)))
+
+(define-public r-binman
+ (package
+ (name "r-binman")
+ (version "0.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "binman" version))
+ (sha256
+ (base32
+ "0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az"))))
+ (properties `((upstream-name . "binman")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-assertthat" ,r-assertthat)
+ ("r-httr" ,r-httr)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-rappdirs" ,r-rappdirs)
+ ("r-semver" ,r-semver)
+ ("r-xml2" ,r-xml2)
+ ("r-yaml" ,r-yaml)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/ropensci/binman")
+ (synopsis "Binary download manager")
+ (description
+ "This package provides tools and functions for managing the download of
+binary files. Binary repositories are defined in the YAML format. Defining
+new pre-download, download and post-download templates allow additional
+repositories to be added.")
+ (license license:expat)))
+
+(define-public r-wdman
+ (package
+ (name "r-wdman")
+ (version "0.2.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "wdman" version))
+ (sha256
+ (base32
+ "1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"))))
+ (properties `((upstream-name . "wdman")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-assertthat" ,r-assertthat)
+ ("r-binman" ,r-binman)
+ ("r-processx" ,r-processx)
+ ("r-semver" ,r-semver)
+ ("r-yaml" ,r-yaml)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://docs.ropensci.org/wdman/")
+ (synopsis "Webdriver/Selenium binary manager")
+ (description
+ "There are a number of binary files associated with the
+Webdriver/Selenium project (see @url{http://www.seleniumhq.org/download/},
+@url{https://sites.google.com/a/chromium.org/chromedriver/},
+@url{https://github.com/mozilla/geckodriver},
+@url{http://phantomjs.org/download.html}, and
+@url{https://github.com/SeleniumHQ/selenium/wiki/InternetExplorerDriver} for
+more information). This package provides functions to download these binaries
+and to manage processes involving them.")
+ (license license:expat)))
+
+(define-public r-rselenium
+ (package
+ (name "r-rselenium")
+ (version "1.7.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "RSelenium" version))
+ (sha256
+ (base32
+ "1xn5fdbzmq7b1f5fc9ls23g177bmnd8bn4p4d8aafr6z3jwkmfir"))))
+ (properties `((upstream-name . "RSelenium")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-binman" ,r-binman)
+ ("r-catools" ,r-catools)
+ ("r-httr" ,r-httr)
+ ("r-openssl" ,r-openssl)
+ ("r-wdman" ,r-wdman)
+ ("r-xml" ,r-xml)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://docs.ropensci.org/RSelenium/")
+ (synopsis "R bindings for Selenium WebDriver")
+ (description
+ "This package provides a set of R bindings for the Selenium 2.0
+WebDriver (see @url{https://selenium.dev/documentation/en/} for more
+information) using the @code{JsonWireProtocol} (see
+@url{https://github.com/SeleniumHQ/selenium/wiki/JsonWireProtocol} for more
+information). Selenium 2.0 WebDriver allows driving a web browser natively as
+a user would either locally or on a remote machine using the Selenium server
+it marks a leap forward in terms of web browser automation. Selenium
+automates web browsers (commonly referred to as browsers). Using RSelenium
+you can automate browsers locally or remotely.")
+ (license license:agpl3+)))
+
+(define-public r-conquer
+ (package
+ (name "r-conquer")
+ (version "1.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "conquer" version))
+ (sha256
+ (base32
+ "1c7id7wgspma5bdcirrhw7f9fp709zxpj31klivasdbvd4jgi4vb"))))
+ (properties `((upstream-name . "conquer")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)))
+ (home-page "https://github.com/XiaoouPan/conquer")
+ (synopsis "Convolution-type smoothed quantile regression")
+ (description
+ "This package provides fast and accurate convolution-type smoothed
+quantile regression, implemented using Barzilai-Borwein gradient descent with
+a Huber regression warm start. Confidence intervals for regression
+coefficients are constructed using multiplier bootstrap.")
+ (license license:gpl3)))
+
+(define-public r-fastshap
+ (package
+ (name "r-fastshap")
+ (version "0.0.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "fastshap" version))
+ (sha256
+ (base32
+ "08f25ib5mry6h8lvj0g3clc9kfl5g2wdd8x8bw455wwmbcm6x5vg"))))
+ (properties `((upstream-name . "fastshap")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-plyr" ,r-plyr)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-tibble" ,r-tibble)))
+ (home-page "https://github.com/bgreenwell/fastshap")
+ (synopsis "Fast approximate Shapley values")
+ (description
+ "This package computes fast (relative to other implementations)
+approximate Shapley values for any supervised learning model. Shapley values
+help to explain the predictions from any black box model using ideas from game
+theory; see @url{Strumbel and Kononenko (2014),
+doi.org/10.1007/s10115-013-0679-x} for details.")
+ (license license:gpl2+)))
+
+(define-public r-metrics
+ (package
+ (name "r-metrics")
+ (version "0.1.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Metrics" version))
+ (sha256
+ (base32
+ "0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"))))
+ (properties `((upstream-name . "Metrics")))
+ (build-system r-build-system)
+ (home-page "https://github.com/mfrasco/Metrics")
+ (synopsis "Evaluation metrics for machine learning")
+ (description
+ "This package provides an implementation of evaluation metrics in R that
+are commonly used in supervised machine learning. It implements metrics for
+regression, time series, binary classification, classification, and
+information retrieval problems. It has zero dependencies and a consistent,
+simple interface for all functions.")
+ (license license:bsd-3)))
+
+(define-public r-iml
+ (package
+ (name "r-iml")
+ (version "0.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "iml" version))
+ (sha256
+ (base32
+ "0xm3q42qahq798ilgg050df0mahhbdfd3fx3i7cpx606h38si0x7"))))
+ (properties `((upstream-name . "iml")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-checkmate" ,r-checkmate)
+ ("r-data-table" ,r-data-table)
+ ("r-formula" ,r-formula)
+ ("r-future" ,r-future)
+ ("r-future-apply" ,r-future-apply)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-metrics" ,r-metrics)
+ ("r-prediction" ,r-prediction)
+ ("r-r6" ,r-r6)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/christophM/iml")
+ (synopsis "Interpretable machine learning")
+ (description
+ "This package provides interpretability methods to analyze the behavior
+and predictions of any machine learning model. Implemented methods are:
+
+@itemize
+@item Feature importance described by Fisher et al. (2018),
+@item accumulated local effects plots described by Apley (2018),
+@item partial dependence plots described by Friedman (2001),
+@item individual conditional expectation ('ice') plots described by Goldstein
+ et al. (2013) @url{https://doi.org/10.1080/10618600.2014.907095},
+@item local models (variant of 'lime') described by Ribeiro et. al (2016),
+@item the Shapley Value described by Strumbelj et. al (2014)
+ @url{https://doi.org/10.1007/s10115-013-0679-x},
+@item feature interactions described by Friedman et. al
+ @url{https://doi.org/10.1214/07-AOAS148} and tree surrogate models.
+@end itemize
+")
+ (license license:expat)))
HCoop / jackhill / guix / guix.git / blobdiff