;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015, 2016, 2019 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2017, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
+;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
;;;
(define-module (gnu packages datastructures)
#:use-module (gnu packages)
- #:use-module (gnu packages documentation)
#:use-module (gnu packages perl)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
(name "sparsehash")
(version "2.0.3")
(source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/sparsehash/sparsehash/"
- "archive/sparsehash-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/sparsehash/sparsehash.git")
+ (commit (string-append name "-" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "133szz0ldwch0kd91l0sa57qsnl020njn622szd9cxrjqyjqds85"))))
+ "0m3f0cnpnpf6aak52wn8xbrrdw8p0yhq8csgc8nlvf9zp8c402na"))))
(build-system gnu-build-system)
(synopsis "Memory-efficient hashtable implementations")
(description
(define-public ssdeep
(package
(name "ssdeep")
- (version "2.13")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://sourceforge/ssdeep/"
- name "-" version "/"
- name "-" version ".tar.gz"))
- (sha256
- (base32
- "1igqy0j7jrklb8fdlrm6ald4cyl1fda5ipfl8crzyl6bax2ajk3f"))))
+ (version "2.14.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/ssdeep-project/ssdeep/"
+ "releases/download/release-" version "/"
+ "ssdeep-" version ".tar.gz"))
+ (sha256
+ (base32 "04qkjc6kksxkv7xbnk32rwmf3a8czdv2vvrdzfs0kw06h73snbpz"))))
(build-system gnu-build-system)
- (home-page "http://ssdeep.sourceforge.net")
+ (arguments
+ `(#:configure-flags
+ (list "--disable-static")))
+ (home-page "https://ssdeep-project.github.io")
(synopsis "Context-triggered piecewise hashing algorithm")
(description "ssdeep computes and matches context triggered piecewise
hashes (CTPH), also called fuzzy checksums. It can identify similar files
(define-public liburcu
(package
(name "liburcu")
- (version "0.11.1")
+ (version "0.12.1")
(source (origin
(method url-fetch)
(uri (string-append "https://www.lttng.org/files/urcu/"
"userspace-rcu-" version ".tar.bz2"))
(sha256
(base32
- "0l1kxgzch4m8fxiz2hc8fwg56hrvzzspp7n0svnl7i7iycdrgfcj"))))
+ "03nd1gy2c3fdb6xwdrd5lr1jcjxbzffqh3z91mzbjhjn6k8fmymv"))))
(build-system gnu-build-system)
(native-inputs
`(("perl" ,perl))) ; for tests
(define-public uthash
(package
(name "uthash")
- (version "2.0.2")
+ (version "2.1.0")
(source
(origin
(method git-fetch)
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32
- "0kslz8k6lssh7fl7ayzwlj62p0asxs3dq03357ls5ywjad238gqg"))))
+ (base32 "0k80bjbb6ss5wpmfmfji6xbyjm990hg9kcshwwnhdnh73vxkcd1m"))))
(build-system gnu-build-system)
(native-inputs
`(("perl" ,perl)))
;; There is no top-level Makefile to do this for us.
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
- (doc (string-append out "/share/doc/" ,name))
+ (doc (string-append out "/share/doc/" ,name "-" ,version))
(include (string-append out "/include")))
;; Don't install HTML files: they're just the below .txt files
;; dolled up, can be stale, and regeneration requires asciidoc.
".tar.gz.offline.install.gz"))
(sha256
(base32
- "1v86ivv3mmdy802i9xkjpxb4cggj3s27wb19ja4sw1klnivjj69g"))))
+ "1v86ivv3mmdy802i9xkjpxb4cggj3s27wb19ja4sw1klnivjj69g"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (delete-file-recursively "external") #t))
+ (patches
+ (list (origin
+ (method url-fetch)
+ (uri "https://salsa.debian.org/science-team/libsdsl/raw/debian/2.1.1+dfsg-2/debian/patches/0001-Patch-cmake-files.patch")
+ (file-name "sdsl-lite-dont-use-bundled-libraries.patch")
+ (sha256
+ (base32
+ "0m542xpys54bni29zibgrfpgpd0zgyny4h131virxsanixsbz52z")))))))
(build-system cmake-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'install-static-library
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (copy-file "lib/libsdsl_static.a"
+ (string-append out "/lib/libsdsl.a")))
+ #t)))))
(native-inputs
- `(("doxygen" ,doxygen)))
+ `(("libdivsufsort" ,libdivsufsort)))
(home-page "https://github.com/simongog/sdsl-lite")
(synopsis "Succinct data structure library")
(description "The Succinct Data Structure Library (SDSL) is a powerful and
complexity of an operation performed on the classical data structure and the
equivalent succinct data structure are (most of the time) identical.")
(license license:gpl3+)))
+
+(define-public libdivsufsort
+ (package
+ (name "libdivsufsort")
+ (version "2.0.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/y-256/libdivsufsort.git")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
+ (build-system cmake-build-system)
+ (arguments
+ '(#:tests? #f ; there are no tests
+ #:configure-flags
+ ;; Needed for rapmap and sailfish.
+ '("-DBUILD_DIVSUFSORT64=ON")))
+ (home-page "https://github.com/y-256/libdivsufsort")
+ (synopsis "Lightweight suffix-sorting library")
+ (description "libdivsufsort is a software library that implements a
+lightweight suffix array construction algorithm. This library provides a
+simple and an efficient C API to construct a suffix array and a
+Burrows-Wheeler transformed string from a given string over a constant-size
+alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
+bytes of memory space, where n is the length of the string.")
+ (license license:expat)))
HCoop / jackhill / guix / guix.git / blobdiff