gnu: Add moarvm.
[jackhill/guix/guix.git] / gnu / local.mk
index 63859a3..f957b8a 100644 (file)
@@ -1,18 +1,18 @@
 # GNU Guix --- Functional package management for GNU
 # Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
-# Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Andreas Enge <andreas@enge.fr>
+# Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr>
 # Copyright © 2016 Mathieu Lirzin <mthl@gnu.org>
-# Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Mark H Weaver <mhw@netris.org>
+# Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Mark H Weaver <mhw@netris.org>
 # Copyright © 2016 Chris Marusich <cmmarusich@gmail.com>
 # Copyright © 2016, 2017, 2018 Kei Kebreau <kkebreau@posteo.net>
 # Copyright © 2016, 2017 Rene Saavedra <rennes@openmailbox.org>
 # Copyright © 2016 Adonay "adfeno" Felipe Nogueira <https://libreplanet.org/wiki/User:Adfeno> <adfeno@openmailbox.org>
-# Copyright © 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
+# Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
 # Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
 # Copyright © 2016, 2017, 2018, 2019 Alex Vong <alexvong1995@gmail.com>
-# Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+# Copyright © 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
 # Copyright © 2016, 2017 Jan Nieuwenhuizen <janneke@gnu.org>
-# Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
+# Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 # Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
 # Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
 # Copyright © 2017, 2018 Gábor Boskovits <boskovits@gmail.com>
@@ -46,6 +46,7 @@ GNU_SYSTEM_MODULES =                          \
   %D%/bootloader/grub.scm                       \
   %D%/bootloader/extlinux.scm                   \
   %D%/bootloader/u-boot.scm                     \
+  %D%/ci.scm                                   \
   %D%/packages.scm                             \
   %D%/packages/abduco.scm                      \
   %D%/packages/abiword.scm                     \
@@ -64,6 +65,7 @@ GNU_SYSTEM_MODULES =                          \
   %D%/packages/antivirus.scm                   \
   %D%/packages/apl.scm                         \
   %D%/packages/apr.scm                         \
+  %D%/packages/arcan.scm                       \
   %D%/packages/aspell.scm                      \
   %D%/packages/assembly.scm                    \
   %D%/packages/astronomy.scm                   \
@@ -99,6 +101,7 @@ GNU_SYSTEM_MODULES =                         \
   %D%/packages/check.scm                       \
   %D%/packages/chemistry.scm                   \
   %D%/packages/chez.scm                                \
+  %D%/packages/chromium.scm                    \
   %D%/packages/ci.scm                          \
   %D%/packages/cinnamon.scm                    \
   %D%/packages/clojure.scm                     \
@@ -112,6 +115,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/conky.scm                       \
   %D%/packages/connman.scm                     \
   %D%/packages/cook.scm                                \
+  %D%/packages/coq.scm                         \
   %D%/packages/cpio.scm                                \
   %D%/packages/cpp.scm                                 \
   %D%/packages/cppi.scm                                \
@@ -150,6 +154,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/ebook.scm                       \
   %D%/packages/ed.scm                          \
   %D%/packages/education.scm                   \
+  %D%/packages/efi.scm                         \
   %D%/packages/electronics.scm                 \
   %D%/packages/elf.scm                         \
   %D%/packages/elixir.scm                      \
@@ -188,6 +193,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/gcc.scm                         \
   %D%/packages/gd.scm                          \
   %D%/packages/gdb.scm                         \
+  %D%/packages/genimage.scm                    \
   %D%/packages/geo.scm                         \
   %D%/packages/gettext.scm                     \
   %D%/packages/ghostscript.scm                 \
@@ -206,6 +212,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/gobby.scm                       \
   %D%/packages/golang.scm                      \
   %D%/packages/gperf.scm                       \
+  %D%/packages/gpodder.scm                     \
   %D%/packages/gprolog.scm                     \
   %D%/packages/gps.scm                         \
   %D%/packages/graph.scm                       \
@@ -218,6 +225,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/gtk.scm                         \
   %D%/packages/guile.scm                       \
   %D%/packages/guile-wm.scm                    \
+  %D%/packages/guile-xyz.scm                   \
   %D%/packages/gv.scm                          \
   %D%/packages/gxmessage.scm                   \
   %D%/packages/hardware.scm                    \
@@ -229,6 +237,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/hexedit.scm                     \
   %D%/packages/hugs.scm                                \
   %D%/packages/hurd.scm                                \
+  %D%/packages/hyperledger.scm                 \
   %D%/packages/ibus.scm                                \
   %D%/packages/icu4c.scm                       \
   %D%/packages/idris.scm                       \
@@ -244,13 +253,15 @@ GNU_SYSTEM_MODULES =                              \
   %D%/packages/iso-codes.scm                   \
   %D%/packages/java.scm                                \
   %D%/packages/java-compression.scm            \
+  %D%/packages/java-maths.scm                  \
   %D%/packages/javascript.scm                  \
   %D%/packages/jemalloc.scm                    \
   %D%/packages/jrnl.scm                                \
   %D%/packages/jose.scm                                \
   %D%/packages/julia.scm                       \
-  %D%/packages/kde.scm              \
+  %D%/packages/kde.scm                         \
   %D%/packages/kde-frameworks.scm              \
+  %D%/packages/kde-plasma.scm                  \
   %D%/packages/kerberos.scm                    \
   %D%/packages/key-mon.scm                     \
   %D%/packages/kodi.scm                                \
@@ -289,7 +300,9 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/lxqt.scm                                \
   %D%/packages/m4.scm                          \
   %D%/packages/machine-learning.scm            \
+  %D%/packages/magic-wormhole.scm              \
   %D%/packages/man.scm                         \
+  %D%/packages/mastodon.scm                    \
   %D%/packages/mail.scm                                \
   %D%/packages/make-bootstrap.scm              \
   %D%/packages/markup.scm                      \
@@ -352,6 +365,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/perl-check.scm                  \
   %D%/packages/perl-compression.scm            \
   %D%/packages/perl-web.scm                    \
+  %D%/packages/perl6.scm                       \
   %D%/packages/photo.scm                       \
   %D%/packages/phabricator.scm                         \
   %D%/packages/php.scm                         \
@@ -369,6 +383,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/pure.scm                                \
   %D%/packages/pv.scm                          \
   %D%/packages/python.scm                      \
+  %D%/packages/python-check.scm                        \
   %D%/packages/python-compression.scm          \
   %D%/packages/python-crypto.scm               \
   %D%/packages/python-web.scm                  \
@@ -391,6 +406,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/packages/rush.scm                                \
   %D%/packages/rust.scm                                \
   %D%/packages/samba.scm                       \
+  %D%/packages/sagemath.scm                    \
   %D%/packages/sawfish.scm                     \
   %D%/packages/scanner.scm                     \
   %D%/packages/scheme.scm                      \
@@ -519,6 +535,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/services/xorg.scm                                \
                                                \
   %D%/system.scm                               \
+  %D%/system/accounts.scm                      \
   %D%/system/file-systems.scm                  \
   %D%/system/install.scm                       \
   %D%/system/linux-container.scm               \
@@ -531,6 +548,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/system/uuid.scm                          \
   %D%/system/vm.scm                            \
                                                \
+  %D%/build/accounts.scm                       \
   %D%/build/activation.scm                     \
   %D%/build/bootloader.scm                     \
   %D%/build/cross-toolchain.scm                        \
@@ -553,6 +571,7 @@ GNU_SYSTEM_MODULES =                                \
   %D%/tests/monitoring.scm                      \
   %D%/tests/nfs.scm                            \
   %D%/tests/install.scm                                \
+  %D%/tests/ldap.scm                           \
   %D%/tests/mail.scm                           \
   %D%/tests/messaging.scm                      \
   %D%/tests/networking.scm                     \
@@ -567,7 +586,6 @@ if ENABLE_INSTALLER
 
 GNU_SYSTEM_MODULES +=                           \
   %D%/installer.scm                            \
-  %D%/installer/record.scm                     \
   %D%/installer/connman.scm                    \
   %D%/installer/final.scm                      \
   %D%/installer/hostname.scm                   \
@@ -575,6 +593,7 @@ GNU_SYSTEM_MODULES +=                           \
   %D%/installer/locale.scm                     \
   %D%/installer/newt.scm                       \
   %D%/installer/parted.scm                     \
+  %D%/installer/record.scm                     \
   %D%/installer/services.scm                   \
   %D%/installer/steps.scm                      \
   %D%/installer/timezone.scm                   \
@@ -592,6 +611,7 @@ GNU_SYSTEM_MODULES +=                           \
   %D%/installer/newt/partition.scm             \
   %D%/installer/newt/services.scm              \
   %D%/installer/newt/timezone.scm              \
+  %D%/installer/newt/user.scm                  \
   %D%/installer/newt/utils.scm                 \
   %D%/installer/newt/welcome.scm               \
   %D%/installer/newt/wifi.scm  
@@ -627,12 +647,11 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/aegisub-icu59-include-unistr.patch      \
   %D%/packages/patches/aegisub-boost68.patch                    \
   %D%/packages/patches/agg-am_c_prototype.patch                        \
-  %D%/packages/patches/allegro-fix-compilation-mesa-18.2.5-and-later.patch \
+  %D%/packages/patches/allegro-mesa-18.2.5-and-later.patch     \
   %D%/packages/patches/amule-crypto-6.patch                    \
   %D%/packages/patches/antiword-CVE-2014-8123.patch                    \
   %D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch  \
   %D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch  \
-  %D%/packages/patches/ao-cad-aarch64-support.patch            \
   %D%/packages/patches/apr-skip-getservbyname-test.patch       \
   %D%/packages/patches/aria2-CVE-2019-3500.patch               \
   %D%/packages/patches/aspell-default-dict-dir.patch           \
@@ -655,12 +674,10 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/beignet-correct-file-names.patch                \
   %D%/packages/patches/biber-fix-encoding-write.patch          \
   %D%/packages/patches/binutils-loongson-workaround.patch      \
-  %D%/packages/patches/blast+-fix-makefile.patch               \
-  %D%/packages/patches/blender-newer-ffmpeg.patch              \
+  %D%/packages/patches/blender-2.79-newer-ffmpeg.patch         \
+  %D%/packages/patches/blender-2.79-python-3.7-fix.patch       \
   %D%/packages/patches/boost-fix-icu-build.patch               \
   %D%/packages/patches/byobu-writable-status.patch             \
-  %D%/packages/patches/cairo-CVE-2016-9082.patch                       \
-  %D%/packages/patches/cairo-setjmp-wrapper.patch              \
   %D%/packages/patches/calibre-no-updates-dialog.patch         \
   %D%/packages/patches/calibre-use-packaged-feedparser.patch   \
   %D%/packages/patches/casync-renameat2-declaration.patch      \
@@ -679,6 +696,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch  \
   %D%/packages/patches/clang-3.8-libc-search-path.patch                \
   %D%/packages/patches/clang-6.0-libc-search-path.patch                \
+  %D%/packages/patches/clang-7.0-libc-search-path.patch                \
   %D%/packages/patches/clang-runtime-asan-build-fixes.patch    \
   %D%/packages/patches/clang-runtime-esan-build-fixes.patch    \
   %D%/packages/patches/classpath-aarch64-support.patch         \
@@ -689,21 +707,18 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/clucene-pkgconfig.patch                 \
   %D%/packages/patches/clx-remove-demo.patch                   \
   %D%/packages/patches/coda-use-system-libs.patch              \
-  %D%/packages/patches/cool-retro-term-dont-check-uninit-member.patch  \
-  %D%/packages/patches/cool-retro-term-fix-array-size.patch    \
-  %D%/packages/patches/cool-retro-term-memory-leak-1.patch     \
+  %D%/packages/patches/combinatorial-blas-awpm.patch           \
+  %D%/packages/patches/combinatorial-blas-io-fix.patch         \
   %D%/packages/patches/cpio-CVE-2016-2037.patch                        \
   %D%/packages/patches/cpufrequtils-fix-aclocal.patch          \
-  %D%/packages/patches/cracklib-CVE-2016-6318.patch            \
-  %D%/packages/patches/cracklib-fix-buffer-overflow.patch      \
   %D%/packages/patches/crawl-upgrade-saves.patch               \
   %D%/packages/patches/crda-optional-gcrypt.patch              \
   %D%/packages/patches/clucene-contribs-lib.patch               \
   %D%/packages/patches/cube-nocheck.patch                      \
   %D%/packages/patches/cursynth-wave-rand.patch                        \
   %D%/packages/patches/cvs-2017-12836.patch                    \
-  %D%/packages/patches/cyrus-sasl-CVE-2013-4122.patch          \
   %D%/packages/patches/dbus-helper-search-path.patch           \
+  %D%/packages/patches/dealii-mpi-deprecations.patch           \
   %D%/packages/patches/deja-dup-use-ref-keyword-for-iter.patch \
   %D%/packages/patches/dfu-programmer-fix-libusb.patch         \
   %D%/packages/patches/diffutils-gets-undeclared.patch         \
@@ -715,15 +730,15 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/docker-fix-tests.patch                  \
   %D%/packages/patches/dovecot-trees-support-dovecot-2.3.patch \
   %D%/packages/patches/doxygen-test.patch                      \
-  %D%/packages/patches/dropbear-CVE-2018-15599.patch           \
   %D%/packages/patches/dvd+rw-tools-add-include.patch          \
+  %D%/packages/patches/efl-mesa-compat.patch                   \
   %D%/packages/patches/elfutils-tests-ptrace.patch             \
+  %D%/packages/patches/elixir-path-length.patch                        \
   %D%/packages/patches/einstein-build.patch                    \
   %D%/packages/patches/emacs-exec-path.patch                   \
   %D%/packages/patches/emacs-fix-scheme-indent-function.patch  \
   %D%/packages/patches/emacs-json-reformat-fix-tests.patch     \
   %D%/packages/patches/emacs-highlight-stages-add-gexp.patch   \
-  %D%/packages/patches/emacs-pdf-tools-poppler.patch           \
   %D%/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch    \
   %D%/packages/patches/emacs-source-date-epoch.patch           \
   %D%/packages/patches/emacs-realgud-fix-configure-ac.patch    \
@@ -742,6 +757,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/fasthenry-spUtils.patch                 \
   %D%/packages/patches/fasthenry-spSolve.patch                 \
   %D%/packages/patches/fasthenry-spFactor.patch                        \
+  %D%/packages/patches/fbreader-curl-7.62.patch                \
   %D%/packages/patches/fcgi-2.4.0-gcc44-fixes.patch            \
   %D%/packages/patches/fcgi-2.4.0-poll.patch                   \
   %D%/packages/patches/fifo-map-fix-flags-for-gcc.patch                \
@@ -787,6 +803,8 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/gcr-fix-collection-tests-to-work-with-gpg-21.patch      \
   %D%/packages/patches/gd-CVE-2018-5711.patch                  \
   %D%/packages/patches/gd-CVE-2018-1000222.patch               \
+  %D%/packages/patches/gd-CVE-2019-6977.patch                  \
+  %D%/packages/patches/gd-CVE-2019-6978.patch                  \
   %D%/packages/patches/gd-fix-tests-on-i686.patch              \
   %D%/packages/patches/gd-freetype-test-failure.patch          \
   %D%/packages/patches/gdm-CVE-2018-14424.patch                        \
@@ -794,14 +812,12 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \
   %D%/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch     \
   %D%/packages/patches/ghc-haddock-library-unbundle.patch              \
-  %D%/packages/patches/ghostscript-CVE-2018-16509.patch                \
-  %D%/packages/patches/ghostscript-bug-699708.patch            \
   %D%/packages/patches/ghostscript-no-header-id.patch          \
   %D%/packages/patches/ghostscript-no-header-uuid.patch                \
   %D%/packages/patches/ghostscript-no-header-creationdate.patch \
   %D%/packages/patches/giflib-make-reallocarray-private.patch  \
-  %D%/packages/patches/glib-networking-ssl-cert-file.patch     \
   %D%/packages/patches/glib-tests-timer.patch                  \
+  %D%/packages/patches/glib-networking-connection.patch        \
   %D%/packages/patches/glibc-CVE-2015-5180.patch               \
   %D%/packages/patches/glibc-CVE-2015-7547.patch               \
   %D%/packages/patches/glibc-CVE-2016-3075.patch               \
@@ -810,13 +826,14 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/glibc-CVE-2017-1000366-pt1.patch                \
   %D%/packages/patches/glibc-CVE-2017-1000366-pt2.patch                \
   %D%/packages/patches/glibc-CVE-2017-1000366-pt3.patch                \
+  %D%/packages/patches/glibc-CVE-2018-11236.patch              \
+  %D%/packages/patches/glibc-CVE-2018-11237.patch              \
   %D%/packages/patches/glibc-allow-kernel-2.6.32.patch         \
   %D%/packages/patches/glibc-bootstrap-system.patch            \
   %D%/packages/patches/glibc-hidden-visibility-ldconfig.patch  \
   %D%/packages/patches/glibc-hurd-magic-pid.patch              \
   %D%/packages/patches/glibc-ldd-x86_64.patch                  \
   %D%/packages/patches/glibc-locales.patch                     \
-  %D%/packages/patches/glibc-memchr-overflow-i686.patch                \
   %D%/packages/patches/glibc-o-largefile.patch                 \
   %D%/packages/patches/glibc-reinstate-prlimit64-fallback.patch        \
   %D%/packages/patches/glibc-vectorized-strcspn-guards.patch   \
@@ -827,13 +844,11 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/glog-gcc-5-demangling.patch             \
   %D%/packages/patches/gmp-arm-asm-nothumb.patch               \
   %D%/packages/patches/gmp-faulty-test.patch                   \
+  %D%/packages/patches/gnome-shell-theme.patch                 \
   %D%/packages/patches/gnome-todo-libical-compat.patch         \
   %D%/packages/patches/gnome-tweak-tool-search-paths.patch     \
-  %D%/packages/patches/gnucash-price-quotes-perl.patch         \
-  %D%/packages/patches/gnucash-disable-failing-tests.patch     \
   %D%/packages/patches/gnucash-fix-test-transaction-failure.patch \
   %D%/packages/patches/gnutls-skip-trust-store-test.patch      \
-  %D%/packages/patches/gnutls-skip-pkgconfig-test.patch                \
   %D%/packages/patches/gobject-introspection-absolute-shlib-path.patch \
   %D%/packages/patches/gobject-introspection-cc.patch          \
   %D%/packages/patches/gobject-introspection-girepository.patch        \
@@ -847,6 +862,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/grub-check-error-efibootmgr.patch       \
   %D%/packages/patches/gsl-test-i686.patch                     \
   %D%/packages/patches/gspell-dash-test.patch                  \
+  %D%/packages/patches/gst-plugins-good-libvpx-compat.patch    \
   %D%/packages/patches/guile-1.8-cpp-4.5.patch                 \
   %D%/packages/patches/guile-2.2-default-utf8.patch            \
   %D%/packages/patches/guile-default-utf8.patch                        \
@@ -869,6 +885,8 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/hdf4-reproducibility.patch              \
   %D%/packages/patches/hdf4-shared-fortran.patch               \
   %D%/packages/patches/hdf5-config-date.patch                  \
+  %D%/packages/patches/hdf5-mpi-deprecations.patch             \
+  %D%/packages/patches/hdf5-1.8-mpi-deprecations.patch         \
   %D%/packages/patches/hdf-eos2-build-shared.patch             \
   %D%/packages/patches/hdf-eos2-remove-gctp.patch              \
   %D%/packages/patches/hdf-eos2-fortrantests.patch             \
@@ -881,6 +899,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/hurd-fix-eth-multiplexer-dependency.patch        \
   %D%/packages/patches/hplip-remove-imageprocessor.patch       \
   %D%/packages/patches/hydra-disable-darcs-test.patch          \
+  %D%/packages/patches/icecat-makeicecat.patch                 \
   %D%/packages/patches/icecat-avoid-bundled-libraries.patch    \
   %D%/packages/patches/icecat-use-system-graphite2+harfbuzz.patch      \
   %D%/packages/patches/icecat-use-system-media-libs.patch      \
@@ -888,6 +907,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/icedtea-7-hotspot-gcc-segfault-workaround.patch  \
   %D%/packages/patches/id3lib-CVE-2007-4460.patch                      \
   %D%/packages/patches/ilmbase-fix-tests.patch                 \
+  %D%/packages/patches/inkscape-poppler-compat3.patch          \
   %D%/packages/patches/intltool-perl-compatibility.patch       \
   %D%/packages/patches/irrlicht-use-system-libs.patch          \
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch        \
@@ -902,7 +922,6 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/java-xerces-build_dont_unzip.patch      \
   %D%/packages/patches/java-xerces-xjavac_taskdef.patch        \
   %D%/packages/patches/jbig2dec-ignore-testtest.patch          \
-  %D%/packages/patches/json-glib-fix-tests-32bit.patch         \
   %D%/packages/patches/kdbusaddons-kinit-file-name.patch       \
   %D%/packages/patches/khmer-use-libraries.patch                \
   %D%/packages/patches/libziparchive-add-includes.patch                \
@@ -915,6 +934,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/kio-search-smbd-on-PATH.patch           \
   %D%/packages/patches/kmod-module-directory.patch             \
   %D%/packages/patches/kmscon-runtime-keymap-switch.patch      \
+  %D%/packages/patches/knot-include-system-lmdb-header.patch   \
   %D%/packages/patches/kpackage-allow-external-paths.patch     \
   %D%/packages/patches/kobodeluxe-paths.patch                  \
   %D%/packages/patches/kobodeluxe-enemies-pipe-decl.patch      \
@@ -927,7 +947,6 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/ldc-bootstrap-disable-tests.patch       \
   %D%/packages/patches/ldc-disable-phobos-tests.patch          \
   %D%/packages/patches/ledger-fix-uninitialized.patch          \
-  %D%/packages/patches/ledger-revert-boost-python-fix.patch    \
   %D%/packages/patches/liba52-enable-pic.patch                 \
   %D%/packages/patches/liba52-link-with-libm.patch             \
   %D%/packages/patches/liba52-set-soname.patch                 \
@@ -953,11 +972,9 @@ dist_patch_DATA =                                          \
   %D%/packages/patches/libevent-2.1-skip-failing-test.patch    \
   %D%/packages/patches/libexif-CVE-2016-6328.patch             \
   %D%/packages/patches/libexif-CVE-2017-7544.patch             \
-  %D%/packages/patches/libextractor-CVE-2018-20430.patch       \
-  %D%/packages/patches/libextractor-CVE-2018-20431.patch       \
   %D%/packages/patches/libgcrypt-make-yat2m-reproducible.patch \
+  %D%/packages/patches/libgit2-avoid-python.patch              \
   %D%/packages/patches/libgit2-mtime-0.patch                   \
-  %D%/packages/patches/libgit2-oom-test.patch                  \
   %D%/packages/patches/libgdata-fix-tests.patch                        \
   %D%/packages/patches/libgdata-glib-duplicate-tests.patch     \
   %D%/packages/patches/libgnome-encoding.patch                 \
@@ -965,6 +982,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/libffi-3.2.1-complex-alpha.patch                \
   %D%/packages/patches/libjxr-fix-function-signature.patch     \
   %D%/packages/patches/libjxr-fix-typos.patch                  \
+  %D%/packages/patches/libopenshot-fixup-tests.patch           \
   %D%/packages/patches/libopenshot-tests-with-system-libs.patch        \
   %D%/packages/patches/libotr-test-auth-fix.patch              \
   %D%/packages/patches/libmad-armv7-thumb-pt1.patch            \
@@ -973,6 +991,7 @@ dist_patch_DATA =                                           \
   %D%/packages/patches/libmad-mips-newgcc.patch                        \
   %D%/packages/patches/libmygpo-qt-fix-qt-5.11.patch           \
   %D%/packages/patches/libmygpo-qt-missing-qt5-modules.patch   \
+  %D%/packages/patches/libreoffice-boost.patch                 \
   %D%/packages/patches/libreoffice-icu.patch                   \
   %D%/packages/patches/libreoffice-glm.patch                   \
   %D%/packages/patches/libsndfile-armhf-type-checks.patch      \
@@ -982,10 +1001,7 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/libssh2-fix-build-failure-with-gcrypt.patch     \
   %D%/packages/patches/libtar-CVE-2013-4420.patch              \
   %D%/packages/patches/libtheora-config-guess.patch            \
-  %D%/packages/patches/libtiff-CVE-2017-9935.patch             \
-  %D%/packages/patches/libtiff-CVE-2017-18013.patch            \
-  %D%/packages/patches/libtiff-CVE-2018-8905.patch             \
-  %D%/packages/patches/libtiff-CVE-2018-10963.patch            \
+  %D%/packages/patches/libtommath-fix-linkage.patch            \
   %D%/packages/patches/libtool-skip-tests2.patch               \
   %D%/packages/patches/libusb-0.1-disable-tests.patch          \
   %D%/packages/patches/libusb-for-axoloti.patch                        \
@@ -1001,6 +1017,7 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/lierolibre-newer-libconfig.patch                \
   %D%/packages/patches/lierolibre-remove-arch-warning.patch    \
   %D%/packages/patches/lierolibre-try-building-other-arch.patch        \
+  %D%/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch      \
   %D%/packages/patches/linux-pam-no-setfsuid.patch             \
   %D%/packages/patches/lirc-localstatedir.patch                        \
   %D%/packages/patches/lirc-reproducible-build.patch           \
@@ -1018,7 +1035,6 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/luminance-hdr-qt-printer.patch          \
   %D%/packages/patches/lvm2-static-link.patch                  \
   %D%/packages/patches/lxsession-use-gapplication.patch         \
-  %D%/packages/patches/lyx-2.2.3-fix-test.patch                        \
   %D%/packages/patches/make-glibc-compat.patch                 \
   %D%/packages/patches/make-impure-dirs.patch                  \
   %D%/packages/patches/mariadb-client-test-32bit.patch         \
@@ -1027,7 +1043,6 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/maxima-defsystem-mkdir.patch            \
   %D%/packages/patches/maven-generate-component-xml.patch              \
   %D%/packages/patches/maven-generate-javax-inject-named.patch         \
-  %D%/packages/patches/mcron-install.patch                     \
   %D%/packages/patches/mcrypt-CVE-2012-4409.patch                      \
   %D%/packages/patches/mcrypt-CVE-2012-4426.patch                      \
   %D%/packages/patches/mcrypt-CVE-2012-4527.patch                      \
@@ -1054,9 +1069,10 @@ dist_patch_DATA =                                                \
   %D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch    \
   %D%/packages/patches/mutt-store-references.patch             \
   %D%/packages/patches/m4-gnulib-libio.patch                   \
-  %D%/packages/patches/net-tools-bitrot.patch                  \
   %D%/packages/patches/netcdf-date-time.patch                  \
   %D%/packages/patches/netcdf-tst_h_par.patch                  \
+  %D%/packages/patches/netpbm-CVE-2017-2586.patch              \
+  %D%/packages/patches/netpbm-CVE-2017-2587.patch              \
   %D%/packages/patches/netsurf-message-timestamp.patch         \
   %D%/packages/patches/netsurf-system-utf8proc.patch           \
   %D%/packages/patches/netsurf-y2038-tests.patch               \
@@ -1069,15 +1085,12 @@ dist_patch_DATA =                                               \
   %D%/packages/patches/nvi-dbpagesize-binpower.patch           \
   %D%/packages/patches/nvi-db4.patch                           \
   %D%/packages/patches/nyacc-binary-literals.patch             \
-  %D%/packages/patches/nyx-show-header-stats-with-python3.patch        \
   %D%/packages/patches/oath-toolkit-glibc-compat.patch         \
   %D%/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch      \
   %D%/packages/patches/ocaml-bitstring-fix-configure.patch \
   %D%/packages/patches/ocaml-CVE-2015-8869.patch               \
   %D%/packages/patches/ocaml-Add-a-.file-directive.patch       \
   %D%/packages/patches/ocaml-enable-ocamldoc-reproducibility.patch     \
-  %D%/packages/patches/ocaml-findlib-make-install.patch        \
-  %D%/packages/patches/ocaml-graph-honor-source-date-epoch.patch       \
   %D%/packages/patches/omake-fix-non-determinism.patch \
   %D%/packages/patches/ola-readdir-r.patch                     \
   %D%/packages/patches/openbabel-fix-crash-on-nwchem-output.patch      \
@@ -1085,16 +1098,18 @@ dist_patch_DATA =                                               \
   %D%/packages/patches/opencv-rgbd-aarch64-test-fix.patch      \
   %D%/packages/patches/openfoam-4.1-cleanup.patch                      \
   %D%/packages/patches/openjdk-10-idlj-reproducibility.patch   \
-  %D%/packages/patches/openldap-CVE-2017-9287.patch            \
   %D%/packages/patches/openocd-nrf52.patch                     \
   %D%/packages/patches/opensmtpd-fix-crash.patch               \
+  %D%/packages/patches/openssh-CVE-2018-20685.patch            \
   %D%/packages/patches/openssl-runpath.patch                   \
   %D%/packages/patches/openssl-1.1-c-rehash-in.patch           \
   %D%/packages/patches/openssl-c-rehash-in.patch               \
+  %D%/packages/patches/openssl-CVE-2019-1559.patch             \
   %D%/packages/patches/orpheus-cast-errors-and-includes.patch  \
   %D%/packages/patches/osip-CVE-2017-7853.patch                        \
   %D%/packages/patches/ots-no-include-missing-file.patch       \
   %D%/packages/patches/owncloud-disable-updatecheck.patch      \
+  %D%/packages/patches/p11-kit-jks-timestamps.patch            \
   %D%/packages/patches/p7zip-CVE-2016-9296.patch               \
   %D%/packages/patches/p7zip-CVE-2017-17969.patch              \
   %D%/packages/patches/p7zip-remove-unused-code.patch          \
@@ -1122,17 +1137,17 @@ dist_patch_DATA =                                               \
   %D%/packages/patches/pinball-src-deps.patch                  \
   %D%/packages/patches/pinball-system-ltdl.patch               \
   %D%/packages/patches/pinentry-efl.patch                      \
+  %D%/packages/patches/pingus-boost-headers.patch              \
   %D%/packages/patches/pingus-sdl-libs-config.patch            \
-  %D%/packages/patches/pius.patch                              \
   %D%/packages/patches/pixman-CVE-2016-5296.patch              \
   %D%/packages/patches/plink-1.07-unclobber-i.patch            \
   %D%/packages/patches/plink-endian-detection.patch            \
   %D%/packages/patches/plotutils-libpng-jmpbuf.patch           \
   %D%/packages/patches/podofo-cmake-3.12.patch                 \
   %D%/packages/patches/polkit-CVE-2018-19788.patch             \
-  %D%/packages/patches/poppler-CVE-2018-19149.patch            \
   %D%/packages/patches/portaudio-audacity-compat.patch         \
   %D%/packages/patches/portmidi-modular-build.patch            \
+  %D%/packages/patches/postgresql-disable-resolve_symlinks.patch       \
   %D%/packages/patches/potrace-tests.patch                     \
   %D%/packages/patches/procmail-ambiguous-getline-debian.patch  \
   %D%/packages/patches/procmail-CVE-2014-3618.patch            \
@@ -1141,6 +1156,7 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/psm-arch.patch                          \
   %D%/packages/patches/psm-ldflags.patch                       \
   %D%/packages/patches/psm-repro.patch                         \
+  %D%/packages/patches/pugixml-versioned-libdir.patch          \
   %D%/packages/patches/pulseaudio-fix-mult-test.patch          \
   %D%/packages/patches/pulseaudio-longer-test-timeout.patch    \
   %D%/packages/patches/pybugz-encode-error.patch               \
@@ -1164,9 +1180,9 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/python-cffi-x87-stack-clean.patch       \
   %D%/packages/patches/python-fix-tests.patch                  \
   %D%/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch \
-  %D%/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \
   %D%/packages/patches/python-configobj-setuptools.patch       \
   %D%/packages/patches/python-faker-fix-build-32bit.patch      \
+  %D%/packages/patches/python-flint-includes.patch             \
   %D%/packages/patches/python-mox3-python3.6-compat.patch      \
   %D%/packages/patches/python-testtools.patch                  \
   %D%/packages/patches/python-paste-remove-timing-test.patch   \
@@ -1178,10 +1194,12 @@ dist_patch_DATA =                                               \
   %D%/packages/patches/python-unittest2-remove-argparse.patch  \
   %D%/packages/patches/python-waitress-fix-tests.patch         \
   %D%/packages/patches/qemu-glibc-2.27.patch                   \
+  %D%/packages/patches/qemu-CVE-2018-16872.patch               \
+  %D%/packages/patches/qemu-CVE-2019-6778.patch                \
   %D%/packages/patches/qt4-ldflags.patch                       \
+  %D%/packages/patches/qtbase-old-kernel.patch                 \
   %D%/packages/patches/qtbase-use-TZDIR.patch                  \
   %D%/packages/patches/qtscript-disable-tests.patch            \
-  %D%/packages/patches/qt-5-renameat2.patch                    \
   %D%/packages/patches/quagga-reproducible-build.patch          \
   %D%/packages/patches/quickswitch-fix-dmenu-check.patch       \
   %D%/packages/patches/quilt-test-fix-regex.patch              \
@@ -1196,7 +1214,7 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/rct-add-missing-headers.patch           \
   %D%/packages/patches/readline-link-ncurses.patch             \
   %D%/packages/patches/readline-6.2-CVE-2014-2524.patch                \
-  %D%/packages/patches/readline-7.0-mingw.patch                        \
+  %D%/packages/patches/red-eclipse-remove-gamma-name-hack.patch        \
   %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch     \
   %D%/packages/patches/reptyr-fix-gcc-7.patch                  \
   %D%/packages/patches/ripperx-missing-file.patch              \
@@ -1207,18 +1225,20 @@ dist_patch_DATA =                                               \
   %D%/packages/patches/ruby-concurrent-ignore-broken-test.patch        \
   %D%/packages/patches/ruby-concurrent-test-arm.patch          \
   %D%/packages/patches/ruby-rack-ignore-failing-test.patch      \
+  %D%/packages/patches/ruby-safe-yaml-add-require-time.patch   \
   %D%/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch\
+  %D%/packages/patches/runc-CVE-2019-5736.patch                        \
   %D%/packages/patches/rust-1.19-mrustc.patch                  \
   %D%/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch \
   %D%/packages/patches/rust-bootstrap-stage0-test.patch                \
   %D%/packages/patches/rust-coresimd-doctest.patch             \
+  %D%/packages/patches/rust-1.30-gdb-llvm.patch                        \
   %D%/packages/patches/rust-reproducible-builds.patch           \
   %D%/packages/patches/rxvt-unicode-escape-sequences.patch     \
+  %D%/packages/patches/scalapack-blacs-mpi-deprecations.patch  \
   %D%/packages/patches/scheme48-tests.patch                    \
-  %D%/packages/patches/scotch-test-threading.patch             \
   %D%/packages/patches/scotch-build-parallelism.patch          \
-  %D%/packages/patches/scotch-graph-diam-64.patch              \
-  %D%/packages/patches/scotch-graph-induce-type-64.patch       \
+  %D%/packages/patches/scotch-integer-declarations.patch       \
   %D%/packages/patches/scribus-poppler.patch                   \
   %D%/packages/patches/sdl-libx11-1.6.patch                    \
   %D%/packages/patches/seq24-rename-mutex.patch                        \
@@ -1234,8 +1254,11 @@ dist_patch_DATA =                                                \
   %D%/packages/patches/soundconverter-remove-gconf-dependency.patch    \
   %D%/packages/patches/soundtouch-CVE-2018-14044-14045.patch   \
   %D%/packages/patches/soundtouch-CVE-2018-1000223.patch       \
+  %D%/packages/patches/sssd-curl-compat.patch                  \
   %D%/packages/patches/steghide-fixes.patch                    \
   %D%/packages/patches/streamlink-update-test.patch            \
+  %D%/packages/patches/superlu-dist-awpm-grid.patch            \
+  %D%/packages/patches/superlu-dist-fix-mpi-deprecations.patch \
   %D%/packages/patches/superlu-dist-scotchmetis.patch          \
   %D%/packages/patches/swig-guile-gc.patch                     \
   %D%/packages/patches/swish-e-search.patch                    \
@@ -1254,10 +1277,14 @@ dist_patch_DATA =                                               \
   %D%/packages/patches/teeworlds-use-latest-wavpack.patch      \
   %D%/packages/patches/texinfo-perl-compat.patch               \
   %D%/packages/patches/texinfo-5-perl-compat.patch             \
+  %D%/packages/patches/texlive-bin-luatex-poppler-compat.patch \
+  %D%/packages/patches/texlive-bin-pdftex-poppler-compat.patch \
+  %D%/packages/patches/texlive-bin-xetex-poppler-compat.patch  \
   %D%/packages/patches/telegram-purple-adjust-test.patch       \
   %D%/packages/patches/texi2html-document-encoding.patch       \
   %D%/packages/patches/texi2html-i18n.patch                    \
   %D%/packages/patches/thefuck-test-environ.patch              \
+  %D%/packages/patches/thermald-make-int-max32-visible.patch   \
   %D%/packages/patches/tidy-CVE-2015-5522+5523.patch           \
   %D%/packages/patches/tinyxml-use-stl.patch                   \
   %D%/packages/patches/tipp10-fix-compiling.patch              \
@@ -1265,16 +1292,9 @@ dist_patch_DATA =                                                \
   %D%/packages/patches/tk-find-library.patch                   \
   %D%/packages/patches/ttf2eot-cstddef.patch                   \
   %D%/packages/patches/ttfautohint-source-date-epoch.patch     \
-  %D%/packages/patches/tomsfastmath-constness.patch            \
   %D%/packages/patches/totem-meson-easy-codec.patch            \
   %D%/packages/patches/tuxpaint-stamps-path.patch              \
   %D%/packages/patches/twinkle-include-qregexpvalidator.patch  \
-  %D%/packages/patches/u-boot-pinebook-a64-update-dts.patch    \
-  %D%/packages/patches/u-boot-pinebook-mmc-calibration.patch   \
-  %D%/packages/patches/u-boot-pinebook-r_i2c-controller.patch  \
-  %D%/packages/patches/u-boot-pinebook-dts.patch               \
-  %D%/packages/patches/u-boot-pinebook-syscon-node.patch       \
-  %D%/packages/patches/u-boot-pinebook-video-bridge.patch      \
   %D%/packages/patches/unzip-CVE-2014-8139.patch               \
   %D%/packages/patches/unzip-CVE-2014-8140.patch               \
   %D%/packages/patches/unzip-CVE-2014-8141.patch               \
@@ -1320,18 +1340,9 @@ dist_patch_DATA =                                                \
   %D%/packages/patches/wordnet-CVE-2008-2149.patch                     \
   %D%/packages/patches/wordnet-CVE-2008-3908-pt1.patch                 \
   %D%/packages/patches/wordnet-CVE-2008-3908-pt2.patch                 \
-  %D%/packages/patches/wpa-supplicant-CVE-2017-13082.patch     \
-  %D%/packages/patches/wpa-supplicant-CVE-2018-14526.patch     \
-  %D%/packages/patches/wpa-supplicant-fix-key-reuse.patch      \
-  %D%/packages/patches/wpa-supplicant-fix-zeroed-keys.patch    \
-  %D%/packages/patches/wpa-supplicant-fix-nonce-reuse.patch    \
-  %D%/packages/patches/wpa-supplicant-krack-followups.patch    \
   %D%/packages/patches/x265-arm-flags.patch                    \
-  %D%/packages/patches/x265-detect512-all-arches.patch         \
-  %D%/packages/patches/xboing-CVE-2004-0149.patch              \
   %D%/packages/patches/xf86-video-ark-remove-mibstore.patch    \
   %D%/packages/patches/xf86-video-geode-glibc-2.20.patch       \
-  %D%/packages/patches/xf86-video-i128-remove-mibstore.patch   \
   %D%/packages/patches/xf86-video-mach64-glibc-2.20.patch      \
   %D%/packages/patches/xf86-video-savage-xorg-compat.patch     \
   %D%/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch \
@@ -1341,9 +1352,7 @@ dist_patch_DATA =                                         \
   %D%/packages/patches/xfce4-session-fix-xflock4.patch         \
   %D%/packages/patches/xfce4-settings-defaults.patch           \
   %D%/packages/patches/xinetd-fix-fd-leak.patch                        \
-  %D%/packages/patches/xinetd-CVE-2013-4342.patch              \
-  %D%/packages/patches/xmodmap-asprintf.patch                  \
-  %D%/packages/patches/zathura-plugindir-environment-variable.patch
+  %D%/packages/patches/xinetd-CVE-2013-4342.patch
 
 MISC_DISTRO_FILES =                            \
   %D%/packages/ld-wrapper.in