;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz>
;;; Copyright © 2020 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2020 Lars-Dominik Braun <ldb@leibniz-psychology.org>
+;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (gnu packages language)
#:use-module (gnu packages libevent)
#:use-module (gnu packages linux)
+ #:use-module (gnu packages logging)
#:use-module (gnu packages man)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
#:use-module (gnu packages perl-web)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages popt)
+ #:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages rdf)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages regex)
+ #:use-module (gnu packages rpc)
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
#:use-module (gnu packages sphinx)
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/4store/4store.git")
+ (url "https://github.com/4store/4store")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
;; Some parts are licensed under the Apache License
license:asl2.0))))
+(define-public mycli
+ (package
+ (name "mycli")
+ (version "1.21.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "mycli" version))
+ (sha256
+ (base32
+ "1q9p0yik9cpvpxjs048anvhicfcna84mpl7axv9bwgr48w40lqwg"))))
+ (build-system python-build-system)
+ (arguments
+ `(#:tests? #f)) ; tests expect a running MySQL
+ (propagated-inputs
+ `(("python-cli-helpers" ,python-cli-helpers)
+ ("python-click" ,python-click)
+ ("python-configobj" ,python-configobj)
+ ("python-cryptography" ,python-cryptography)
+ ("python-prompt-toolkit" ,python-prompt-toolkit)
+ ("python-pygments" ,python-pygments)
+ ("python-pymysql" ,python-pymysql)
+ ("python-sqlparse" ,python-sqlparse)))
+ (home-page "http://mycli.net")
+ (synopsis
+ "Terminal Client for MySQL with AutoCompletion and Syntax Highlighting")
+ (description
+ "MyCLI is a command line interface for MySQL, MariaDB, and Percona with
+auto-completion and syntax highlighting.")
+ (license license:bsd-3)))
+
;; XXX When updating, check whether boost-for-mysql is still needed.
;; It might suffice to patch ‘cmake/boost.cmake’ as done in the past.
(define-public mysql
(define-public mariadb
(package
(name "mariadb")
- (version "10.1.44")
+ (version "10.1.45")
(source (origin
(method url-fetch)
(uri (string-append "https://downloads.mariadb.com/MariaDB"
version ".tar.gz"))
(sha256
(base32
- "0fah6d50hldq0farxwr8mj3jnniwdz0d1wsha07nx37fc79h7wi1"))
+ "1mfs0x4c0z7d306n128dxdawk3llk25vxif5zwl20fv1z5qhz3wx"))
(patches (search-patches "mariadb-client-test-32bit.patch"))
(modules '((guix build utils)))
(snippet
(define-public mariadb-connector-c
(package
(name "mariadb-connector-c")
- (version "3.1.6")
+ (version "3.1.9")
(source (origin
(method url-fetch)
(uri (string-append
version "-src.tar.gz"))
(sha256
(base32
- "083724f5daaqyzdcx508caz6fk2hs89jff85zg28ih43vxkvnrnj"))))
+ "1izjzf7yzjqzlk8dkp327fa9lawsv2hnnlnr7g5lshyx5azrk38h"))))
(inputs
`(("openssl" ,openssl)))
(build-system cmake-build-system)
(arguments
- ;; No tests.
- '(#:tests? #f))
+ '(#:tests? #f)) ; no tests
(home-page "https://mariadb.com/kb/en/mariadb-connector-c/")
(synopsis "Client library to connect to MySQL or MariaDB")
(description "The MariaDB Connector/C is used to connect applications
(define-public postgresql
(package
(name "postgresql")
- (version "10.12")
+ (version "10.13")
(source (origin
(method url-fetch)
(uri (string-append "https://ftp.postgresql.org/pub/source/v"
version "/postgresql-" version ".tar.bz2"))
(sha256
(base32
- "1rsab4zf4rx7pvvhlwhb04kb95aiad9cwazc4ksbvg2gij47z3rq"))
+ "1qal0yp7a90yzya7hl56gsmw5fvacplrdhpn7h9gnbyr1i2iyw2d"))
(patches (search-patches "postgresql-disable-resolve_symlinks.patch"))))
(build-system gnu-build-system)
(arguments
(define-public rocksdb
(package
(name "rocksdb")
- (version "6.8.1")
+ (version "6.10.2")
(source (origin
(method git-fetch)
(uri (git-reference
(file-name (git-file-name name version))
(sha256
(base32
- "0i6qglyrcqwxnrvq67zm7ln79a4sj8mzgij9h0nz5zkxax8v1zg1"))
+ "1f2wqb6px812ijcivq3rsknqgkv01wblc6sd8wavhrw8qljgr3s1"))
(modules '((guix build utils)))
(snippet
'(begin
(source (origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/coffeeandscripts/sqlcrush.git")
+ (url "https://github.com/coffeeandscripts/sqlcrush")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(define-public perl-dbix-class
(package
(name "perl-dbix-class")
- (version "0.082841")
+ (version "0.082842")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
"DBIx-Class-" version ".tar.gz"))
(sha256
- (base32
- "1gf3hgv8f9rnr8bl4ljgsqk4aliphmvljhsk4282kvdc4mcgh1fp"))))
+ (base32 "1rh7idjjbibc1zmiaaarask434lh0lx7f2xyfwmy37k9fa0xcpmh"))))
(build-system perl-build-system)
(native-inputs
`(("perl-dbd-sqlite" ,perl-dbd-sqlite)
("perl-path-class" ,perl-path-class)
("perl-scalar-list-utils" ,perl-scalar-list-utils)
("perl-scope-guard" ,perl-scope-guard)
- ("perl-sql-abstract" ,perl-sql-abstract)
+ ("perl-sql-abstract-classic" ,perl-sql-abstract-classic)
("perl-sub-name" ,perl-sub-name)
("perl-text-balanced" ,perl-text-balanced)
("perl-try-tiny" ,perl-try-tiny)))
(define-public perl-sql-abstract
(package
(name "perl-sql-abstract")
- (version "1.86")
+ (version "1.87")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
"SQL-Abstract-" version ".tar.gz"))
(sha256
- (base32 "1pwcm8hwxcgidyyrak37lx69d85q728jxsb0b14jz93gbvdgg9z7"))))
+ (base32 "0jhw91b23wc9bkfwcgvka4x5ddxk58m9bcp5ay7a3vx77nla09p9"))))
(build-system perl-build-system)
(native-inputs
`(("perl-module-install" ,perl-module-install)
time your data changes.")
(license license:perl-license)))
+(define-public perl-sql-abstract-classic
+ (package
+ (name "perl-sql-abstract-classic")
+ (version "1.91")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://cpan/authors/id/R/RI/RIBASUSHI/"
+ "SQL-Abstract-Classic-" version ".tar.gz"))
+ (sha256
+ (base32 "0a7g13hs3kdxrjn43sfli09mgsi9d6w0dfw6hlk268av17yisgaf"))))
+ (build-system perl-build-system)
+ (native-inputs
+ `(("perl-test-deep" ,perl-test-deep)
+ ("perl-test-exception" ,perl-test-exception)
+ ("perl-test-warn" ,perl-test-warn)))
+ (propagated-inputs
+ `(("perl-mro-compat" ,perl-mro-compat)
+ ("perl-sql-abstract" ,perl-sql-abstract)))
+ (home-page "https://metacpan.org/release/SQL-Abstract-Classic")
+ (synopsis "Generate SQL from Perl data structures")
+ (description
+ "This module is nearly identical to @code{SQL::Abstract} 1.81, and exists
+to preserve the ability of users to opt into the new way of doing things in
+later versions according to their own schedules.
+
+It is an abstract SQL generation module based on the concepts used by
+@code{DBIx::Abstract}, with several important differences, especially when it
+comes to @code{WHERE} clauses. These concepts were modified to make the SQL
+easier to generate from Perl data structures.
+
+The underlying idea is for this module to do what you mean, based on the data
+structures you provide it. You shouldn't have to modify your code every time
+your data changes, as this module figures it out.")
+ (license license:perl-license)))
+
(define-public perl-sql-splitstatement
(package
(name "perl-sql-splitstatement")
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/drycpp/lmdbxx.git")
+ (url "https://github.com/drycpp/lmdbxx")
(commit version)))
(file-name (git-file-name name version))
(sha256
(origin
(method git-fetch)
(uri (git-reference
- (url "https://github.com/brianb/mdbtools.git")
+ (url "https://github.com/brianb/mdbtools")
(commit version)))
(file-name (git-file-name name version))
(sha256
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
- (version "1.3.15")
+ (version "1.3.18")
(source
(origin
(method url-fetch)
(uri (pypi-uri "SQLAlchemy" version))
(sha256
- (base32 "0iglkvymfp35zm5pxy5kzqvcv96kkas0chqdx7xpla86sspa9k64"))))
+ (base32 "1rwc6ss1cnz3kxx0p9p6xw0w79r8qw03lcc29k31yb3rcigvfbys"))))
(build-system python-build-system)
(native-inputs
`(("python-cython" ,python-cython) ; for C extensions
(source
(origin (method git-fetch)
(uri (git-reference
- (url "https://github.com/kayak/pypika.git")
+ (url "https://github.com/kayak/pypika")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
@end table")
(license license:asl2.0)))
+;; There are many wrappers for this in other languages. When touching, please
+;; be sure to ensure all dependencies continue to build.
(define-public apache-arrow
(package
(name "apache-arrow")
- (version "0.10.0")
+ (version "0.17.1")
(source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/apache/arrow")
+ (commit (string-append "apache-arrow-" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "02r6yx3yhywzikd3b0vfkjgddhfiriyx2vpm3jf5880wq59x798a"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
(setenv "BOOST_ROOT" (assoc-ref %build-inputs "boost"))
(setenv "BROTLI_HOME" (assoc-ref %build-inputs "brotli"))
(setenv "FLATBUFFERS_HOME" (assoc-ref %build-inputs "flatbuffers"))
- (setenv "JEMALLOC_HOME" (assoc-ref %build-inputs "jemalloc"))
(setenv "RAPIDJSON_HOME" (assoc-ref %build-inputs "rapidjson"))
#t)))
#:build-type "Release"
#:configure-flags
(list "-DARROW_PYTHON=ON"
-
- ;; Install to PREFIX/lib (the default is
- ;; PREFIX/lib64).
- (string-append "-DCMAKE_INSTALL_LIBDIR="
- (assoc-ref %outputs "out")
+ "-DARROW_GLOG=ON"
+ ;; Parquet options
+ "-DARROW_PARQUET=ON"
+ "-DPARQUET_BUILD_EXECUTABLES=ON"
+ ;; The maintainers disallow using system versions of
+ ;; jemalloc:
+ ;; https://issues.apache.org/jira/browse/ARROW-3507. This
+ ;; is unfortunate because jemalloc increases performance:
+ ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
+ "-DARROW_JEMALLOC=OFF"
+
+ ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
+ ;; option that instructs the build system how to resolve
+ ;; each dependency. SYSTEM = Finding the dependency in
+ ;; system paths using CMake's built-in find_package
+ ;; function, or using pkg-config for packages that do not
+ ;; have this feature
+ "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
+
+ ;; Split output into its component packages.
+ (string-append "-DCMAKE_INSTALL_PREFIX="
+ (assoc-ref %outputs "lib"))
+ (string-append "-DCMAKE_INSTALL_RPATH="
+ (assoc-ref %outputs "lib")
"/lib")
-
- ;; XXX These Guix package offer static
- ;; libraries that are not position independent,
- ;; and ld fails to link them into the arrow .so
- "-DARROW_WITH_SNAPPY=OFF"
- "-DARROW_WITH_ZLIB=OFF"
- "-DARROW_WITH_ZSTD=OFF"
- "-DARROW_WITH_LZ4=OFF"
+ (string-append "-DCMAKE_INSTALL_BINDIR="
+ (assoc-ref %outputs "out")
+ "/bin")
+ (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
+ (assoc-ref %outputs "include")
+ "/share/include")
+
+
+ "-DARROW_WITH_SNAPPY=ON"
+ "-DARROW_WITH_ZLIB=ON"
+ "-DARROW_WITH_ZSTD=ON"
+ "-DARROW_WITH_LZ4=ON"
+ "-DARROW_COMPUTE=ON"
+ "-DARROW_CSV=ON"
+ "-DARROW_DATASET=ON"
+ "-DARROW_FILESYSTEM=ON"
+ "-DARROW_HDFS=ON"
+ "-DARROW_JSON=ON"
+ ;; Arrow Python C++ integration library (required for
+ ;; building pyarrow). This library must be built against
+ ;; the same Python version for which you are building
+ ;; pyarrow. NumPy must also be installed. Enabling this
+ ;; option also enables ARROW_COMPUTE, ARROW_CSV,
+ ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
+ ;; ARROW_JSON.
+ "-DARROW_PYTHON=ON"
;; Building the tests forces on all the
;; optional features and the use of static
;; libraries.
"-DARROW_BUILD_TESTS=OFF"
+ "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
+ ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
"-DARROW_BUILD_STATIC=OFF")))
(inputs
`(("boost" ,boost)
- ("rapidjson" ,rapidjson)
("brotli" ,google-brotli)
- ("flatbuffers" ,flatbuffers)
- ("jemalloc" ,jemalloc)
+ ("double-conversion" ,double-conversion)
+ ("snappy" ,snappy)
+ ("gflags" ,gflags)
+ ("glog" ,glog)
+ ("apache-thrift" ,apache-thrift "lib")
+ ("protobuf" ,protobuf)
+ ("rapidjson" ,rapidjson)
+ ("zlib" ,zlib)
+ ("bzip2" ,bzip2)
+ ("lz4" ,lz4)
+ ("zstd" ,zstd "lib")
+ ("re2" ,re2)
+ ("grpc" ,grpc)
("python-3" ,python)
("python-numpy" ,python-numpy)))
+ (native-inputs
+ `(("pkg-config" ,pkg-config)))
+ (outputs '("out" "lib" "include"))
(home-page "https://arrow.apache.org/")
(synopsis "Columnar in-memory analytics")
(description "Apache Arrow is a columnar in-memory analytics layer
-designed to accelerate big data. It houses a set of canonical in-memory
+designed to accelerate big data. It houses a set of canonical in-memory
representations of flat and hierarchical data along with multiple
-language-bindings for structure manipulation. It also provides IPC and common
+language-bindings for structure manipulation. It also provides IPC and common
algorithm implementations.")
(license license:asl2.0)))
(define-public python-pyarrow
(package
+ (inherit apache-arrow)
(name "python-pyarrow")
- (version "0.10.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/apache/arrow")
- (commit (string-append "apache-arrow-" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "04xkp922b8qrrnpvv9ixxnvk7151n1plzx6aqdff6frn9651zvxs"))))
(build-system python-build-system)
(arguments
- '(#:tests? #f ; XXX There are no tests in the "python" directory
+ '(#:tests? #f ; XXX There are no tests in the "python" directory
#:phases
(modify-phases %standard-phases
(delete 'build) ; XXX the build is performed again during the install phase
(add-after 'unpack 'enter-source-directory
(lambda _ (chdir "python") #t))
- (add-after 'unpack 'set-env
+ (add-after 'unpack 'make-git-checkout-writable
(lambda _
- (setenv "ARROW_HOME" (assoc-ref %build-inputs "apache-arrow"))
+ (for-each make-file-writable (find-files "."))
#t)))))
(propagated-inputs
- `(("apache-arrow" ,apache-arrow)
+ `(("apache-arrow" ,apache-arrow "lib")
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-six" ,python-six)))
(native-inputs
`(("cmake" ,cmake-minimal)
+ ("pkg-config" ,pkg-config)
("python-cython" ,python-cython)
("python-pytest" ,python-pytest)
("python-pytest-runner" ,python-pytest-runner)
("python-setuptools-scm" ,python-setuptools-scm)))
+ (outputs '("out"))
(home-page "https://arrow.apache.org/docs/python/")
(synopsis "Python bindings for Apache Arrow")
- (description "This library provides a Pythonic API wrapper for the reference
-Arrow C++ implementation, along with tools for interoperability with pandas,
-NumPy, and other traditional Python scientific computing packages.")
+ (description
+ "This library provides a Pythonic API wrapper for the reference Arrow C++
+implementation, along with tools for interoperability with pandas, NumPy, and
+other traditional Python scientific computing packages.")
(license license:asl2.0)))
(define-public python2-pyarrow
HCoop / jackhill / guix / guix.git / blobdiff