#:use-module (gnu packages tls)
#:use-module (gnu packages web))
+(define-public r-clipr
+ (package
+ (name "r-clipr")
+ (version "0.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "clipr" version))
+ (sha256
+ (base32
+ "061x84ildc7g1p91yw5iyj8lpqdf4hqv36as85lw8c6qv9ywbsqv"))))
+ (build-system r-build-system)
+ (home-page "https://github.com/mdlincoln/clipr")
+ (synopsis "Read and write from the system clipboard")
+ (description
+ "This package provides simple utility functions to read from and write to
+the system clipboards.")
+ (license license:gpl3)))
+
(define-public r-tidyverse
(package
(name "r-tidyverse")
(define-public r-reprex
(package
(name "r-reprex")
- (version "0.1.2")
+ (version "0.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "reprex" version))
(sha256
(base32
- "105d9vsmqfilgpw8psfb2wyiz1hvcycvh4cqhb3ab37lm3rcavvs"))))
+ "1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9"))))
(build-system r-build-system)
(propagated-inputs
`(("r-callr" ,r-callr)
+ ("r-clipr" ,r-clipr)
("r-knitr" ,r-knitr)
+ ("r-rlang" ,r-rlang)
("r-rmarkdown" ,r-rmarkdown)
- ("r-whisker" ,r-whisker)))
+ ("r-whisker" ,r-whisker)
+ ("r-withr" ,r-withr)))
(home-page "https://github.com/tidyverse/reprex")
(synopsis "Prepare reproducible R code examples for sharing")
(description
(define-public r-callr
(package
(name "r-callr")
- (version "2.0.4")
+ (version "3.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "callr" version))
(sha256
(base32
- "1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf"))))
+ "1rxbxy6kn7dj90z9hpppr9cnpvnxzknba2dwrdp0lrk5dh462qz3"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-r6" ,r-r6)
+ `(("r-base64enc" ,r-base64enc)
+ ("r-r6" ,r-r6)
("r-processx" ,r-processx)))
(home-page "https://github.com/r-lib/callr#readme")
(synopsis "Call R from R")
(define-public r-glue
(package
(name "r-glue")
- (version "1.2.0")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "glue" version))
(sha256
(base32
- "0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr"))))
+ "1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq"))))
(build-system r-build-system)
(home-page "https://github.com/tidyverse/glue")
(synopsis "Interpreted string literals")
(define-public r-pls
(package
(name "r-pls")
- (version "2.6-0")
+ (version "2.7-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "pls" version))
(sha256
(base32
- "15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx"))))
+ "0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x"))))
(build-system r-build-system)
(home-page "http://mevik.net/work/software/pls.html")
(synopsis "Partial Least Squares and Principal Component Regression")
processes. Most of its code is based on the @code{psutil} Python package.")
(license license:bsd-3)))
+(define-public r-pkgbuild
+ (package
+ (name "r-pkgbuild")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "pkgbuild" version))
+ (sha256
+ (base32
+ "10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-callr" ,r-callr)
+ ("r-crayon" ,r-crayon)
+ ("r-desc" ,r-desc)
+ ("r-r6" ,r-r6)
+ ("r-rprojroot" ,r-rprojroot)
+ ("r-withr" ,r-withr)))
+ (home-page "https://github.com/r-pkgs/pkgbuild")
+ (synopsis "Find tools needed to build R packages")
+ (description
+ "This package provides functions used to build R packages. It locates
+compilers needed to build R packages on various platforms and ensures the PATH
+is configured appropriately so R can use them.")
+ (license license:gpl3)))
+
+(define-public r-pkgload
+ (package
+ (name "r-pkgload")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "pkgload" version))
+ (sha256
+ (base32
+ "1rjj229nq9fsl4ki4m75ybsavjgpqqhsr1zjzapwicsrxv6212px"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-desc" ,r-desc)
+ ("r-pkgbuild" ,r-pkgbuild)
+ ("r-rlang" ,r-rlang)
+ ("r-rprojroot" ,r-rprojroot)
+ ("r-rstudioapi" ,r-rstudioapi)
+ ("r-withr" ,r-withr)))
+ (home-page "https://github.com/r-lib/pkgload")
+ (synopsis "Simulate package installation and attach")
+ (description
+ "This package simulates the process of installing a package and then
+attaching it. This is a key part of the @code{devtools} package as it allows
+you to rapidly iterate while developing a package.")
+ (license license:gpl3)))
+
(define-public r-rcpp
(package
(name "r-rcpp")
(define-public r-ipred
(package
(name "r-ipred")
- (version "0.9-6")
+ (version "0.9-7")
(source
(origin
(method url-fetch)
(uri (cran-uri "ipred" version))
(sha256
(base32
- "1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"))))
+ "0q53cqs46501wsd4cmfsmr78l8nv1hkbamk9m0ns5qy02df5r254"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
(define-public r-broom
(package
(name "r-broom")
- (version "0.4.5")
+ (version "0.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "broom" version))
(sha256
(base32
- "1mrrqqw1bmjf2v88ziqwb5y86g29h0a3rsx2jpw0hrzrzb8i5kcb"))))
+ "1r3831vq0fd5sh5841xr844sghg88z7ws91hg4jgnzbbkxfjp4ag"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-dplyr" ,r-dplyr)
+ `(("r-backports" ,r-backports)
+ ("r-dplyr" ,r-dplyr)
("r-nlme" ,r-nlme)
- ("r-plyr" ,r-plyr)
- ("r-psych" ,r-psych)
+ ("r-purrr" ,r-purrr)
("r-reshape2" ,r-reshape2)
("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)))
(home-page "https://github.com/tidyverse/broom")
(synopsis "Convert statistical analysis objects into tidy data frames")
or between integer vectors representing generic sequences.")
(license license:gpl3+)))
+(define-public r-ucminf
+ (package
+ (name "r-ucminf")
+ (version "1.1-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ucminf" version))
+ (sha256
+ (base32
+ "01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"))))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/ucminf/")
+ (synopsis "General-purpose unconstrained non-linear optimization")
+ (description
+ "This package provides an implementation of an algorithm for
+general-purpose unconstrained non-linear optimization. The algorithm is of
+quasi-Newton type with BFGS updating of the inverse Hessian and soft line
+search with a trust region type monitoring of the input to the line search
+algorithm. The interface of @code{ucminf} is designed for easy interchange
+with the package @code{optim}.")
+ (license license:gpl2+)))
+
+(define-public r-ordinal
+ (package
+ (name "r-ordinal")
+ (version "2018.8-25")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ordinal" version))
+ (sha256
+ (base32
+ "03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-matrix" ,r-matrix)
+ ("r-numderiv" ,r-numderiv)
+ ("r-ucminf" ,r-ucminf)))
+ (home-page "https://github.com/runehaubo/ordinal")
+ (synopsis "Regression models for ordinal data")
+ (description
+ "This package provides an implementation of cumulative link (mixed)
+models also known as ordered regression models, proportional odds models,
+proportional hazards models for grouped survival times and ordered models.
+Estimation is via maximum likelihood and mixed models are fitted with the
+Laplace approximation and adaptive Gauss-Hermite quadrature.")
+ (license license:gpl2+)))
+
(define-public r-jomo
(package
(name "r-jomo")
- (version "2.6-3")
+ (version "2.6-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "jomo" version))
(sha256
(base32
- "14s8q0j5zgl1g1pfxg3a4y1jzvs0wl61ir4992wsj7safskj7zvi"))))
+ "05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lme4" ,r-lme4)
+ ("r-ordinal" ,r-ordinal)
("r-survival" ,r-survival)))
(home-page "https://cran.r-project.org/web/packages/jomo/")
(synopsis "Multilevel Joint Modelling Multiple Imputation")
(define-public r-pan
(package
(name "r-pan")
- (version "1.4")
+ (version "1.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "pan" version))
(sha256
(base32
- "1p3nigmhrnlch86g89hn7l0wvkifx3k9n59g0psi95yck43kza76"))))
+ "1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"))))
(build-system r-build-system)
(native-inputs `(("gfortran" ,gfortran)))
(home-page "https://cran.r-project.org/web/packages/pan/")
(define-public r-mice
(package
(name "r-mice")
- (version "3.1.0")
+ (version "3.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mice" version))
(sha256
(base32
- "0xpn215yfzib4hw09cwilnyg9zbvq460njavfvm84mvgwbm25byi"))))
+ "1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx"))))
(build-system r-build-system)
(propagated-inputs
`(("r-broom" ,r-broom)
(define-public r-xts
(package
(name "r-xts")
- (version "0.10-2")
+ (version "0.11-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "xts" version))
(sha256
(base32
- "1i11fczks4lh8rpi6xbm9bm7f3jpcp6xw03kv178g3n3361qhmc1"))))
+ "1v50yn4bsjzdyk7r90isn6dxmpkapillrhpx3gqsshd180vwzqk9"))))
(build-system r-build-system)
(propagated-inputs `(("r-zoo" ,r-zoo)))
- (native-inputs `(("gfortran" ,gfortran)))
(home-page "https://github.com/joshuaulrich/xts")
(synopsis "Extensible time series")
(description
(define-public r-pillar
(package
(name "r-pillar")
- (version "1.2.3")
+ (version "1.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "pillar" version))
(sha256
(base32
- "1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8"))))
+ "1q6arybmfqxhp5zqj1fri5pb8v7ywcv7bmgf81rrmgl892p4bn5f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
("r-crayon" ,r-crayon)
+ ("r-fansi" ,r-fansi)
("r-rlang" ,r-rlang)
("r-utf8" ,r-utf8)))
(home-page "https://github.com/r-lib/pillar")
(define-public r-tinytex
(package
(name "r-tinytex")
- (version "0.6")
+ (version "0.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "tinytex" version))
(sha256
(base32
- "16y9dldaff2kx1fkm92p7zlph0dcrdmlmavpdgf5y9jbhmc8g83f"))))
+ "1bgpr5i5399jf9n6pg2mm4aamisbhppg082ad0wv1j4g0rlxf1gy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-xfun" ,r-xfun)))
(define-public r-metap
(package
(name "r-metap")
- (version "0.9")
+ (version "1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "metap" version))
(sha256
(base32
- "03vg0mb6q7j2z0pkxykbak0hcp6dcak7zxs1lw9hswz9kqrq5jhz"))))
+ "18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-lattice" ,r-lattice)))
+ `(("r-lattice" ,r-lattice)
+ ("r-rdpack" ,r-rdpack)))
(home-page "http://www.dewey.myzen.co.uk/meta/meta.html")
(synopsis "Meta-analysis of significance values")
(description
(define-public r-statnet-common
(package
(name "r-statnet-common")
- (version "4.1.2")
+ (version "4.1.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "statnet.common" version))
(sha256
(base32
- "0h3g687214rlycca0fjrpy1lqbqsrginxqhmhl2mb2jinqqxcfgd"))))
+ "14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic"))))
(properties
`((upstream-name . "statnet.common")))
(build-system r-build-system)
(define-public r-tsa
(package
(name "r-tsa")
- (version "1.01")
+ (version "1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "TSA" version))
(sha256
(base32
- "0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"))))
+ "0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"))))
(properties `((upstream-name . "TSA")))
(build-system r-build-system)
(propagated-inputs
`(("r-leaps" ,r-leaps)
("r-locfit" ,r-locfit)
- ("r-mgcv" ,r-mgcv)
- ("r-tseries" ,r-tseries)))
+ ("r-mgcv" ,r-mgcv)))
(home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm")
(synopsis "Time series analysis")
(description
(define-public r-heatmaply
(package
(name "r-heatmaply")
- (version "0.14.1")
+ (version "0.15.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "heatmaply" version))
(sha256
(base32
- "03p2caclhfgqgpx3wwck5h06jy3mxgs05gjmwkb7hmwghkjh41jc"))))
+ "0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
(define-public r-fnn
(package
(name "r-fnn")
- (version "1.1")
+ (version "1.1.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "FNN" version))
(sha256
(base32
- "1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"))))
+ "1n61jrcmakqif8f827x4qnlhm2jqpj5fgjj65c4p0kdd8lzw8pqp"))))
(properties `((upstream-name . "FNN")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/FNN")
(define-public r-maptools
(package
(name "r-maptools")
- (version "0.9-2")
+ (version "0.9-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "maptools" version))
(sha256
(base32
- "075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v"))))
+ "0hxbv01im9zk1qrwgigpc510w6x0kzdzip4gx2jzfqmmwr8m17r8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-foreign" ,r-foreign)
(define-public r-later
(package
(name "r-later")
- (version "0.7.3")
+ (version "0.7.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "later" version))
(sha256
(base32
- "04j2phymxgkk4hv9pfa5w3s98w5d7fvm11blrdhxmray4n618msw"))))
+ "125zc499gj702x2bch95lsfzk2qb4dzv3604x9afym2i3ylrmm64"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
it.")
(license license:gpl2+)))
-(define-public r-codedepends
- (package
- (name "r-codedepends")
- (version "0.5-3")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "CodeDepends" version))
- (sha256
- (base32
- "03p82s0abca2jimzqvxdzykfzca7c7fhm5xsjxybcksr4gggr5sc"))))
- (properties `((upstream-name . "CodeDepends")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-codetools" ,r-codetools)
- ("r-xml" ,r-xml)))
- (home-page "http://cran.r-project.org/web/packages/CodeDepends")
- (synopsis "Analysis of R code for reproducible research and code comprehension")
- (description
- "This package provides tools for analyzing R expressions or blocks of
-code and determining the dependencies between them. It focuses on R scripts,
-but can be used on the bodies of functions. There are many facilities
-including the ability to summarize or get a high-level view of code,
-determining dependencies between variables, code improvement suggestions.")
- ;; Any version of the GPL
- (license (list license:gpl2+ license:gpl3+))))
-
(define-public r-rappdirs
(package
(name "r-rappdirs")
(define-public r-reticulate
(package
(name "r-reticulate")
- (version "1.8")
+ (version "1.10")
(source
(origin
(method url-fetch)
(uri (cran-uri "reticulate" version))
(sha256
(base32
- "0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr"))))
+ "0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq"))))
(build-system r-build-system)
(inputs `(("python" ,python)))
(propagated-inputs
(define-public r-ggpubr
(package
(name "r-ggpubr")
- (version "0.1.7")
+ (version "0.1.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggpubr" version))
(sha256
(base32
- "110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i"))))
+ "0psl2zndm4wk6nnj1nv305islpxfvfgd87gjh2ph8yqn4mxpnfi1"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cowplot" ,r-cowplot)
("r-ggrepel" ,r-ggrepel)
("r-ggsci" ,r-ggsci)
("r-ggsignif" ,r-ggsignif)
+ ("r-glue" ,r-glue)
("r-gridextra" ,r-gridextra)
("r-magrittr" ,r-magrittr)
+ ("r-polynom" ,r-polynom)
("r-purrr" ,r-purrr)
("r-scales" ,r-scales)
("r-tidyr" ,r-tidyr)))
univariate polynomial manipulations.")
(license license:gpl2)))
+(define-public r-gbrd
+ (package
+ (name "r-gbrd")
+ (version "0.4-11")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gbRd" version))
+ (sha256
+ (base32
+ "06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"))))
+ (properties `((upstream-name . "gbRd")))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/gbRd/")
+ (synopsis "Utilities for processing Rd objects and files")
+ (description
+ "This package provides utilities for processing Rd objects and files.
+Extract argument descriptions and other parts of the help pages of
+functions.")
+ (license license:gpl2+)))
+
+(define-public r-rdpack
+ (package
+ (name "r-rdpack")
+ (version "0.9-0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "Rdpack" version))
+ (sha256
+ (base32
+ "067w0w6kza0hkzcnx58danl83yfvl9yjacr47mnid2bg856gdd1b"))))
+ (properties `((upstream-name . "Rdpack")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bibtex" ,r-bibtex)
+ ("r-gbrd" ,r-gbrd)))
+ (home-page "https://github.com/GeoBosh/Rdpack")
+ (synopsis "Update and manipulate Rd documentation objects")
+ (description
+ "This package provides functions for manipulation of R documentation
+objects, including functions @code{reprompt()} and @code{ereprompt()} for
+updating Rd documentation for functions, methods and classes; it also includes
+Rd macros for citations and import of references from bibtex files for use in
+Rd files and roxygen2 comments, as well as many functions for manipulation of
+references and Rd files.")
+ (license license:gpl2+)))
+
+(define-public r-officer
+ (package
+ (name "r-officer")
+ (version "0.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "officer" version))
+ (sha256
+ (base32
+ "14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-base64enc" ,r-base64enc)
+ ("r-digest" ,r-digest)
+ ("r-htmltools" ,r-htmltools)
+ ("r-magrittr" ,r-magrittr)
+ ("r-r6" ,r-r6)
+ ("r-rcpp" ,r-rcpp)
+ ("r-uuid" ,r-uuid)
+ ("r-xml2" ,r-xml2)
+ ("r-zip" ,r-zip)))
+ (home-page "https://davidgohel.github.io/officer")
+ (synopsis "Manipulation of Word and PowerPoint documents")
+ (description
+ "This package provides tools to access and manipulate Word and PowerPoint
+documents from R. The package focuses on tabular and graphical reporting from
+R; it also provides two functions that let users get document content into
+data objects. A set of functions lets add and remove images, tables and
+paragraphs of text in new or existing documents. When working with PowerPoint
+presentations, slides can be added or removed; shapes inside slides can also
+be added or removed. When working with Word documents, a cursor can be used
+to help insert or delete content at a specific location in the document.")
+ (license license:gpl3)))
+
+(define-public r-snakecase
+ (package
+ (name "r-snakecase")
+ (version "0.9.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "snakecase" version))
+ (sha256
+ (base32
+ "1g6xai53dl24ws0mwhqrkcv583ziaq505cv3z8v5dhjgy98kilyj"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-stringi" ,r-stringi)
+ ("r-stringr" ,r-stringr)))
+ (home-page "https://github.com/Tazinho/snakecase")
+ (synopsis "Convert strings into any case")
+ (description
+ "This package provides a consistent, flexible and easy to use tool to
+parse and convert strings into cases like snake or camel among others.")
+ (license license:gpl3)))
+
+(define-public r-prediction
+ (package
+ (name "r-prediction")
+ (version "0.3.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "prediction" version))
+ (sha256
+ (base32
+ "19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)))
+ (home-page "https://github.com/leeper/prediction")
+ (synopsis "Tidy, type-safe prediction methods")
+ (description
+ "This package provides the @code{prediction()} function, a type-safe
+alternative to @code{predict()} that always returns a data frame. The package
+currently supports common model types (e.g., @code{\"lm\"}, @code{\"glm\"})
+from the @code{stats} package, as well as numerous other model classes from
+other add-on packages.")
+ (license license:expat)))
+
+(define-public r-sjlabelled
+ (package
+ (name "r-sjlabelled")
+ (version "1.0.13")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "sjlabelled" version))
+ (sha256
+ (base32
+ "0xizj7mrhnbn8kwjgm076si9w68a7lgrx4vj1sbqmv9jx055h8wv"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-broom" ,r-broom)
+ ("r-dplyr" ,r-dplyr)
+ ("r-haven" ,r-haven)
+ ("r-magrittr" ,r-magrittr)
+ ("r-prediction" ,r-prediction)
+ ("r-purrr" ,r-purrr)
+ ("r-rlang" ,r-rlang)
+ ("r-snakecase" ,r-snakecase)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyselect" ,r-tidyselect)))
+ (home-page "https://github.com/strengejacke/sjlabelled")
+ (synopsis "Labelled data utility functions")
+ (description
+ "This package provides a collection of functions dealing with labelled
+data, like reading and writing data between R and other statistical software
+packages. This includes easy ways to get, set or change value and variable
+label attributes, to convert labelled vectors into factors or numeric (and
+vice versa), or to deal with multiple declared missing values.")
+ (license license:gpl3)))
+
+(define-public r-sjmisc
+ (package
+ (name "r-sjmisc")
+ (version "2.7.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "sjmisc" version))
+ (sha256
+ (base32
+ "11cy09k1d2y5wwqvafqxr01hzk4x68ji2pqlwj7fnpw27i3ap4q4"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-broom" ,r-broom)
+ ("r-crayon" ,r-crayon)
+ ("r-dplyr" ,r-dplyr)
+ ("r-haven" ,r-haven)
+ ("r-magrittr" ,r-magrittr)
+ ("r-pillar" ,r-pillar)
+ ("r-purrr" ,r-purrr)
+ ("r-rlang" ,r-rlang)
+ ("r-sjlabelled" ,r-sjlabelled)
+ ("r-stringdist" ,r-stringdist)
+ ("r-stringr" ,r-stringr)
+ ("r-tibble" ,r-tibble)
+ ("r-tidyr" ,r-tidyr)
+ ("r-tidyselect" ,r-tidyselect)))
+ (home-page "https://github.com/strengejacke/sjmisc")
+ (synopsis "Data and variable transformation functions")
+ (description
+ "This package is a collection of miscellaneous utility functions,
+supporting data transformation tasks like recoding, dichotomizing or grouping
+variables, setting and replacing missing values. The data transformation
+functions also support labelled data, and all integrate seamlessly into a
+tidyverse workflow.")
+ (license license:gpl3)))
+
+(define-public r-nortest
+ (package
+ (name "r-nortest")
+ (version "1.0-4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "nortest" version))
+ (sha256
+ (base32
+ "17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/nortest/")
+ (synopsis "Tests for normality")
+ (description
+ "This package provides five omnibus tests for testing the composite
+hypothesis of normality.")
+ (license license:gpl2+)))
+
+(define-public r-moonbook
+ (package
+ (name "r-moonbook")
+ (version "0.2.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "moonBook" version))
+ (sha256
+ (base32
+ "0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6"))))
+ (properties `((upstream-name . "moonBook")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-magrittr" ,r-magrittr)
+ ("r-nortest" ,r-nortest)
+ ("r-purrr" ,r-purrr)
+ ("r-sjmisc" ,r-sjmisc)
+ ("r-stringr" ,r-stringr)
+ ("r-survival" ,r-survival)))
+ (home-page "https://github.com/cardiomoon/moonBook")
+ (synopsis "Functions and datasets for the book by Keon-Woong Moon")
+ (description
+ "This package provides several analysis-related functions for the book
+entitled \"R statistics and graph for medical articles\" (written in Korean),
+version 1, by Keon-Woong Moon with Korean demographic data with several plot
+functions.")
+ (license license:gpl2)))
+
+(define-public r-flextable
+ (package
+ (name "r-flextable")
+ (version "0.4.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "flextable" version))
+ (sha256
+ (base32
+ "09j2y0z7rkc0w1cl9pp1cpk6fnzzfr6245mxa3ca42z9k2cy2jfl"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-gdtools" ,r-gdtools)
+ ("r-htmltools" ,r-htmltools)
+ ("r-knitr" ,r-knitr)
+ ("r-officer" ,r-officer)
+ ("r-r6" ,r-r6)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-stringr" ,r-stringr)
+ ("r-xml2" ,r-xml2)))
+ (home-page "https://davidgohel.github.io/flextable")
+ (synopsis "Functions for tabular reporting")
+ (description
+ "This package provides tools to create pretty tables for HTML documents
+and other formats. Functions are provided to let users create tables, modify
+and format their content. It extends the @code{officer} package and can be
+used within R markdown documents when rendering to HTML and to Word
+documents.")
+ (license license:gpl3)))
+
(define-public r-writexl
(package
(name "r-writexl")
(define-public r-doby
(package
(name "r-doby")
- (version "4.6-1")
+ (version "4.6-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "doBy" version))
(sha256
(base32
- "1y02awzid23bxz8hx6j8pxd6i7jaq8pdw3k60rag8y6m69incrw5"))))
+ "02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb"))))
(properties `((upstream-name . "doBy")))
(build-system r-build-system)
(propagated-inputs
colony optimization algorithm @url{http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pdf}.
This version is a work-in-progress and is written in R code.")
(license license:expat)))
+
+(define-public r-abcp2
+ (package
+ (name "r-abcp2")
+ (version "1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ABCp2" version))
+ (sha256
+ (base32 "1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"))))
+ (properties `((upstream-name . "ABCp2")))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-mass" ,r-mass)))
+ (home-page "https://cran.r-project.org/web/packages/ABCp2/")
+ (synopsis "Approximate Bayesian Computational Model for Estimating P2")
+ (description
+ "This package tests the goodness of fit of a distribution of offspring to the Normal,
+Poisson, and Gamma distribution and estimates the proportional paternity of the
+second male (P2) based on the best fit distribution.")
+ (license license:gpl2)))
+
+(define-public r-abcrf
+ (package
+ (name "r-abcrf")
+ (version "1.7.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "abcrf" version))
+ (sha256
+ (base32 "06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-mass" ,r-mass)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-ranger" ,r-ranger)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-readr" ,r-readr)
+ ("r-stringr" ,r-stringr)))
+ (home-page "https://cran.r-project.org/web/packages/abcrf/")
+ (synopsis "Approximate bayesian computation via random forests")
+ (description
+ "This package performs approximate bayesian computation (ABC) model choice and
+parameter inference via random forests. This machine learning tool named random
+forests (RF) can conduct selection among the highly complex models covered by
+ABC algorithms.")
+ (license license:gpl2+)))
+
+(define-public r-abctools
+ (package
+ (name "r-abctools")
+ (version "1.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "abctools" version))
+ (sha256
+ (base32 "07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abc" ,r-abc)
+ ("r-abind" ,r-abind)
+ ("r-hmisc" ,r-hmisc)
+ ("r-plyr" ,r-plyr)))
+ (home-page "https://github.com/dennisprangle/abctools/")
+ (synopsis "Tools for ABC analyses")
+ (description
+ "This @code{r-abctools} package provides tools for approximate Bayesian computation
+including summary statistic selection and assessing coverage. This includes
+recent dimension reduction algorithms to tune the choice of summary statistics,
+and coverage methods to tune the choice of threshold.")
+ (license license:gpl2+)))
HCoop / jackhill / guix / guix.git / blobdiff