gnu: r-wgcna: Move to (gnu packages bioconductor).

[jackhill/guix/guix.git] / configure.ac

diff --git a/configure.ac b/configure.ac
index 6a6a020..adca374 100644 (file)
--- a/configure.ac
+++ b/configure.ac
@@ -26,6 +26,8 @@ AM_GNU_GETTEXT_VERSION([0.18.1])
 GUIX_SYSTEM_TYPE
 GUIX_ASSERT_SUPPORTED_SYSTEM
 
+AM_CONDITIONAL([CROSS_COMPILING], [test "x$cross_compiling" = "xyes"])
+
 AC_ARG_WITH(store-dir,
   AC_HELP_STRING([--with-store-dir=PATH],
     [file name of the store (defaults to /gnu/store)]),
@@ -134,9 +136,21 @@ if test "x$guix_cv_have_recent_guile_sqlite3" != "xyes"; then
   AC_MSG_ERROR([A recent Guile-SQLite3 could not be found; please install it.])
 fi
 
-GUILE_MODULE_AVAILABLE([have_guile_gcrypt], [(gcrypt hash)])
-if test "x$have_guile_gcrypt" != "xyes"; then
-  AC_MSG_ERROR([Guile-Gcrypt could not be found; please install it.])
+GUIX_CHECK_GUILE_GCRYPT
+if test "x$guix_cv_have_recent_guile_gcrypt" != "xyes"; then
+  AC_MSG_ERROR([A recent Guile-Gcrypt could not be found; please install it.])
+fi
+
+dnl Check for Guile-zlib.
+GUILE_MODULE_AVAILABLE([have_guile_zlib], [(zlib)])
+if test "x$have_guile_zlib" != "xyes"; then
+  AC_MSG_ERROR([Guile-zlib is missing; please install it.])
+fi
+
+dnl Check for Guile-lzlib.
+GUILE_MODULE_AVAILABLE([have_guile_lzlib], [(lzlib)])
+if test "x$have_guile_lzlib" != "xyes"; then
+  AC_MSG_ERROR([Guile-lzlib is missing; please install it.])
 fi
 
 dnl Guile-newt is used by the graphical installer.
@@ -157,10 +171,6 @@ AM_CONDITIONAL([ENABLE_INSTALLER],
 dnl Make sure we have a full-fledged Guile.
 GUIX_ASSERT_GUILE_FEATURES([regex posix socket net-db threads])
 
-dnl Make sure we don't suffer from the bug in 'equal?' wrt. syntax objects
-dnl found in 2.2.1.  See <https://bugs.gnu.org/29903>.
-GUIX_ASSERT_SYNTAX_OBJECT_EQUAL
-
 AC_PROG_SED
 
 dnl Decompressors, for use by the substituter and other modules.
@@ -184,11 +194,6 @@ AC_ARG_WITH([nix-prefix],
    esac],
   [])
 
-AC_PATH_PROG([NIX_HASH], [nix-hash])
-if test "x$guix_build_daemon$NIX_HASH" = "xno"; then
-   AC_MSG_ERROR([Nix programs not found; please install Nix or use `--with-nix-prefix'.])
-fi
-
 AC_ARG_WITH([nixpkgs],
   [AS_HELP_STRING([--with-nixpkgs=DIR],
     [search for Nixpkgs in DIR (for testing purposes only)])],
@@ -243,27 +248,6 @@ esac
 AC_SUBST([LIBGCRYPT_PREFIX])
 AC_SUBST([LIBGCRYPT_LIBDIR])
 
-dnl Library name of zlib suitable for 'dynamic-link'.
-GUIX_LIBZ_LIBDIR([libz_libdir])
-if test "x$libz_libdir" = "x"; then
-  LIBZ="libz"
-else
-  LIBZ="$libz_libdir/libz"
-fi
-AC_MSG_CHECKING([for zlib's shared library name])
-AC_MSG_RESULT([$LIBZ])
-AC_SUBST([LIBZ])
-
-dnl Library name of lzlib suitable for 'dynamic-link'.
-GUIX_LIBLZ_FILE_NAME([LIBLZ])
-if test "x$LIBLZ" = "x"; then
-  LIBLZ="liblz"
-else
-  # Strip the .so or .so.1 extension since that's what 'dynamic-link' expects.
-  LIBLZ="`echo $LIBLZ | sed -es'/\.so\(\.[[0-9.]]\+\)\?//g'`"
-fi
-AC_SUBST([LIBLZ])
-
 dnl Check for Guile-SSH, for the (guix ssh) module.
 GUIX_CHECK_GUILE_SSH
 AM_CONDITIONAL([HAVE_GUILE_SSH],
@@ -284,15 +268,6 @@ dnl Documentation translation.
 AM_MISSING_PROG([PO4A_TRANSLATE], [po4a-translate])
 AM_MISSING_PROG([PO4A_UPDATEPO], [po4a-updatepo])
 
-dnl Emacs (optional), for 'etc/indent-code.el'.
-AC_PATH_PROG([EMACS], [emacs])
-if test "x$EMACS" = x; then
-    AC_MSG_WARN([Please install GNU Emacs to use etc/indent-code.el.])
-else
-    AC_SUBST([EMACS])
-    AC_CONFIG_FILES([etc/indent-code.el], [chmod +x etc/indent-code.el])
-fi
-
 case "$storedir" in
   /gnu/store)
     ;;
@@ -308,6 +283,7 @@ AC_CONFIG_FILES([Makefile
                  etc/guix-daemon.cil
                  guix/config.scm])
 
+AC_CONFIG_FILES([etc/committer.scm], [chmod +x etc/committer.scm])
 AC_CONFIG_FILES([test-env:build-aux/test-env.in], [chmod +x test-env])
 AC_CONFIG_FILES([pre-inst-env:build-aux/pre-inst-env.in],
   [chmod +x pre-inst-env])