;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
+;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
+;;; Copyright © 2020 Vinicius Monego <monego@posteo.net>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (gnu packages graphviz)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
+ #:use-module (gnu packages llvm)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages multiprecision)
(define-public giac
(package
(name "giac")
- (version "1.5.0-87")
+ (version "1.6.0-7")
(source
(origin
(method url-fetch)
"~parisse/debian/dists/stable/main/source/"
"giac_" version ".tar.gz"))
(sha256
- (base32 "1d0h1yb7qvh9x7wwv9yrzmcp712f49w1iljkxp4y6g9pzsmg1mmv"))))
+ (base32 "1pvgp137zcl0rbhdn1j41xxfml7fp771a7x4ph8qrhhlx0hxzn3p"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((ice-9 ftw)
(delete-file (string-append out "/bin/xcasnew"))
#t))))))
(inputs
- ;;; TODO: Add libnauty.
+;;; TODO: Add libnauty.
`(("fltk" ,fltk)
("glpk" ,glpk)
("gmp" ,gmp)
("gsl" ,gsl)
("lapack" ,lapack)
("libao" ,ao)
- ("libjpeg" ,libjpeg)
+ ("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
("libsamplerate" ,libsamplerate)
("libx11" ,libx11)
(define-public flint
(package
(name "flint")
- (version "2.5.2")
+ (version "2.6.0")
(source (origin
(method url-fetch)
(uri (string-append
"http://flintlib.org/flint-"
version ".tar.gz"))
(sha256 (base32
- "11syazv1a8rrnac3wj3hnyhhflpqcmq02q8pqk2m6g2k6h0gxwfb"))
- (patches (search-patches "flint-ldconfig.patch"))))
+ "0h08a71kn8347zsqjamqnmrxjpsnnzpmhvxb6d2xmfrcs6nyv2ch"))))
(build-system gnu-build-system)
(propagated-inputs
`(("gmp" ,gmp)
(define-public singular
(package
(name "singular")
- (version "4.1.2p1")
+ (version "4.1.3p2")
(source
(origin
(method url-fetch)
#\.) "-")
"/singular-" version ".tar.gz"))
(sha256 (base32
- "0kvd55353fiqyq1msmi0kka66n5h0aqs7m3km60r01b1w2f8085m"))))
+ "1524yrni7gh0hir5ckridq671q5s6avfjdsdyahj51kzdl3wcypf"))))
(build-system gnu-build-system)
(native-inputs
`(("doxygen" ,doxygen)
(uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz"))
(sha256
(base32
- "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2"))))
+ "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2"))
+ (patches (search-patches "bc-fix-cross-compilation.patch"))))
(build-system gnu-build-system)
(native-inputs
- `(("ed" ,ed)
+ `(("automake" ,automake)
+ ("autoconf" ,autoconf)
+ ("ed" ,ed)
("flex" ,flex)
("texinfo" ,texinfo)))
(arguments
'(#:configure-flags
- (list "--with-readline")))
+ (list "--with-readline")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'autogen
+ (lambda _
+ (invoke "autoreconf" "-vif"))))))
(home-page "https://www.gnu.org/software/bc/")
(synopsis "Arbitrary precision numeric processing language")
(description
Sine Transform} (DST) and @dfn{Discrete Hartley Transform} (DHT).")
(license license:bsd-2)))
+(define-public lmfit
+ (package
+ (name "lmfit")
+ (version "8.2.2")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://jugit.fz-juelich.de/mlz/lmfit.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "00bch77a6qgnw6vzsjn2a42n8n683ih3xm0wpr454jxa15hw78vf"))))
+ (build-system cmake-build-system)
+ (native-inputs
+ `(("perl" ,perl))) ; for pod2man
+ (home-page "https://jugit.fz-juelich.de/mlz/lmfit")
+ (synopsis "Levenberg-Marquardt minimization and least-squares fitting")
+ (description "lmfit is a C library for Levenberg-Marquardt least-squares
+minimization and curve fitting. It is mature code, based on decades-old
+algorithms from the FORTRAN library MINPACK.")
+ (license license:bsd-2)))
+
+(define-public symengine
+ (package
+ (name "symengine")
+ (version "0.6.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/symengine/symengine.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "129iv9maabmb42ylfdv0l0g94mcbf3y4q3np175008rcqdr8z6h1"))))
+ (build-system cmake-build-system)
+ (arguments
+ '(#:configure-flags
+ ;; These are the suggested build options in the README.
+ '("-DCMAKE_BUILD_TYPE=Release"
+ "-DWITH_GMP=on"
+ "-DWITH_MPFR=on"
+ "-DWITH_MPC=on"
+ "-DINTEGER_CLASS=flint"
+ "-DWITH_LLVM=on"
+ "-DWITH_SYMENGINE_THREAD_SAFE=on"
+ "-DBUILD_SHARED_LIBS=on"))) ;also build libsymengine
+ (native-inputs
+ `(("llvm" ,llvm)))
+ (inputs
+ `(("flint" ,flint)
+ ("gmp" ,gmp)
+ ("mpc" ,mpc)
+ ("mpfr" ,mpfr)))
+ (home-page "https://github.com/symengine/symengine")
+ (synopsis "Fast symbolic manipulation library")
+ (description
+ "SymEngine is a standalone fast C++ symbolic manipulation library.
+Optional thin wrappers allow usage of the library from other languages.")
+ (license (list license:expat ;SymEngine
+ license:bsd-3)))) ;3rd party code
+
(define-public eigen
(package
(name "eigen")
("libtool" ,libtool)))
(propagated-inputs
`(("gmp" ,gmp))) ; gmp++.h includes gmpxx.h
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'bootstrap 'setenv
- ;; Prevent the autogen.sh script to carry out the configure
- ;; script, which has not yet been patched to replace /bin/sh.
- (lambda _
- (setenv "NOCONFIGURE" "yes")
- #t)))))
(synopsis "Algebraic computations with exact rings and fields")
(description
"Givaro is a C++ library implementing the basic arithmetic of various
`(#:configure-flags
(list (string-append "--with-blas-libs="
(assoc-ref %build-inputs "openblas")
- "/lib/libopenblas.so"))
- #:phases
- (modify-phases %standard-phases
- (add-before 'bootstrap 'setenv
- ;; Prevent the autogen.sh script to carry out the configure
- ;; script, which has not yet been patched to replace /bin/sh.
- (lambda _
- (setenv "NOCONFIGURE" "yes")
- #t)))))
+ "/lib/libopenblas.so"))))
(synopsis "C++ library for linear algebra over finite fields")
(description
"FFLAS-FFPACK is a C++ template library for basic linear algebra
("pkg-config" ,pkg-config)))
(inputs
`(("fflas-ffpack" ,fflas-ffpack)))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'bootstrap 'setenv
- ;; Prevent the autogen.sh script to carry out the configure
- ;; script, which has not yet been patched to replace /bin/sh.
- (lambda _
- (setenv "NOCONFIGURE" "yes")
- #t)))))
(synopsis "C++ library for linear algebra over exact rings")
(description
"LinBox is a C++ template library for exact linear algebra computation
HCoop / jackhill / guix / guix.git / blobdiff