;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2017, 2018 Pierre Langlois <pierre.langlois@gmx.com>
-;;; Copyright © 2015, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2017, 2018, 2019, 2021 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Kristofer Buffington <kristoferbuffington@gmail.com>
;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
-;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2018, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us>
;;; Copyright © 2019 Alex Griffin <a@ajgrf.com>
;;; Copyright © 2019 Gábor Boskovits <boskovits@gmail.com>
;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com>
;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
+;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz>
;;;
;;; This file is part of GNU Guix.
;;;
either single machines or networked clusters.")
(license license:gpl3+)))
-(define-public go-gopkg.in-mgo.v2
- (package
- (name "go-gopkg.in-mgo.v2")
- (version "2016.08.01")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/go-mgo/mgo")
- (commit (string-append "r" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0rwbi1z63w43b0z9srm8m7iz1fdwx7bq7n2mz862d6liiaqa59jd"))))
- (build-system go-build-system)
- (arguments
- `(#:import-path "gopkg.in/mgo.v2"
- ;; TODO: The tests fail as MongoDB fails to start
- ;; Error parsing command line: unrecognised option '--chunkSize'
- #:tests? #f
- #:phases
- (modify-phases %standard-phases
- (delete 'reset-gzip-timestamps)
- (add-before 'check 'start-mongodb
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (with-directory-excursion "src/gopkg.in/mgo.v2"
- (invoke "make" "startdb")))
- #t))
- (add-after 'check 'stop'mongodb
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (with-directory-excursion "src/gopkg.in/mgo.v2"
- (invoke "make" "stopdb")))
- #t)))))
- (native-inputs
- `(("go-gopkg.in-check.v1" ,go-gopkg.in-check.v1)
- ("mongodb" ,mongodb)
- ("daemontools" ,daemontools)))
- (synopsis "@code{mgo} offers a rich MongoDB driver for Go.")
- (description
- "@code{mgo} (pronounced as mango) is a MongoDB driver for the Go language.
-It implements a rich selection of features under a simple API following
-standard Go idioms.")
- (home-page "https://labix.org/mgo")
- (license license:bsd-2)))
-
(define-public ephemeralpg
(package
(name "ephemeralpg")
("cyrus-sasl" ,cyrus-sasl)))
(outputs '("out" "doc"))
(arguments
- '(#:phases
+ '(#:tests? #f ;many tests fail and use too much time
+ #:phases
(modify-phases %standard-phases
(add-before 'bootstrap 'fix-configure.ac
;; Move the AC_CONFIG_AUX_DIR macro use under AC_INIT, otherwise we
(delete-file "bootstrap.sh") ;not useful in the context of Guix
(substitute* "configure.ac"
(("^AC_CONFIG_AUX_DIR\\(\\[build-aux\\]\\).*") "")
- (("(^AC_INIT.*)" anchor)
- (string-append anchor "AC_CONFIG_AUX_DIR([build-aux])\n")))
- #t))
- (add-before 'bootstrap 'disable-failing-tests
- ;; See: https://bugs.launchpad.net/libmemcached/+bug/1803926
- (lambda _
- ;; Mark some heavily failing test suites as expected to fail.
- (substitute* "Makefile.am"
- (("(XFAIL_TESTS =[^\n]*)" xfail_tests)
- (string-append xfail_tests " tests/testudp"
- " tests/libmemcached-1.0/testapp"
- " tests/libmemcached-1.0/testsocket")))
- ;; Disable two tests of the unittest test suite.
- (substitute* "libtest/unittest.cc"
- ((".*echo_fubar_BINARY \\},.*") "")
- ((".*application_doesnotexist_BINARY \\},.*") ""))
- #t))
- (add-after 'disable-dns-tests 'build-and-install-html-doc
+ (("^AC_INIT.*" anchor)
+ (string-append anchor "AC_CONFIG_AUX_DIR([build-aux])\n")))))
+ (add-before 'build 'build-and-install-html-doc
(lambda* (#:key outputs #:allow-other-keys)
(let ((html (string-append (assoc-ref outputs "doc")
"/share/doc/libmemcached/html/")))
;; Cleanup useless files.
(for-each delete-file-recursively
(map (lambda (x) (string-append html x))
- '("_sources" ".doctrees" ".buildinfo"))))
- #t)))))
- (home-page "https://libmemcached.org/")
+ '("_sources" ".doctrees" ".buildinfo")))))))))
+ (home-page "https://libmemcached.org/libMemcached.html")
(synopsis "C++ library for memcached")
(description "libMemcached is a library to use memcached in C/C++
applications. It comes with a complete reference guide and documentation of
(define-public python2-pylibmc
(package-with-python2 python-pylibmc))
-;; This is the last version of mongodb before they switched to the Server Side
-;; Public License (SSPL), which is not a FOSS license. As such, this package
-;; cannot be updated.
-(define-public mongodb
- (package
- (name "mongodb")
- (version "3.4.24")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://github.com/mongodb/mongo/archive/r"
- version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0y1669sqj8wyf0y0njhxs4qhn1qzjhrs2h2qllya5samxrlrjhkg"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- (for-each (lambda (dir)
- (delete-file-recursively
- (string-append "src/third_party/" dir)))
- '("pcre-8.42" "scons-2.5.0" "snappy-1.1.3"
- "valgrind-3.11.0" "wiredtiger"
- "yaml-cpp-0.6.2" "zlib-1.2.11"))
- #t))))
- (build-system scons-build-system)
- (inputs
- `(("openssl" ,openssl-1.0)
- ("pcre" ,pcre)
- ,@(match (%current-system)
- ((or "x86_64-linux" "aarch64-linux" "mips64el-linux")
- `(("wiredtiger" ,wiredtiger)))
- (_ `()))
- ("yaml-cpp" ,yaml-cpp)
- ("zlib" ,zlib)
- ("snappy" ,snappy)))
- (native-inputs
- `(("valgrind" ,valgrind)
- ("perl" ,perl)
- ("python" ,python-2)
- ("python2-pymongo" ,python2-pymongo)
- ("python2-pyyaml" ,python2-pyyaml)
- ("tzdata" ,tzdata-for-tests)))
- (arguments
- `(#:scons ,scons-python2
- #:phases
- (let ((common-options
- `(;; "--use-system-tcmalloc" TODO: Missing gperftools
- "--use-system-pcre"
- ;; wiredtiger is 64-bit only
- ,,(if (any (cute string-prefix? <> (or (%current-target-system)
- (%current-system)))
- '("i686-linux" "armhf-linux"))
- ``"--wiredtiger=off"
- ``"--use-system-wiredtiger")
- ;; TODO
- ;; build/opt/mongo/db/fts/unicode/string.o failed: Error 1
- ;; --use-system-boost
- "--use-system-snappy"
- "--use-system-zlib"
- "--use-system-valgrind"
- ;; "--use-system-stemmer" TODO: Missing relevant package
- "--use-system-yaml"
- "--disable-warnings-as-errors"
- ,(format #f "--jobs=~a" (parallel-job-count))
- "--ssl")))
- (modify-phases %standard-phases
- (add-after 'unpack 'patch
- (lambda _
- ;; Remove use of GNU extensions in parse_number_test.cpp, to
- ;; allow compiling with GCC 7 or later
- ;; https://jira.mongodb.org/browse/SERVER-28063
- (substitute* "src/mongo/base/parse_number_test.cpp"
- (("0xabcab\\.defdefP-10")
- "687.16784283419838"))
- #t))
- (add-after 'unpack 'scons-propagate-environment
- (lambda _
- ;; Modify the SConstruct file to arrange for
- ;; environment variables to be propagated.
- (substitute* "SConstruct"
- (("^env = Environment\\(")
- "env = Environment(ENV=os.environ, "))
- #t))
- (add-after 'unpack 'create-version-file
- (lambda _
- (call-with-output-file "version.json"
- (lambda (port)
- (display ,(simple-format #f "{
- \"version\": \"~A\"
-}" version) port)))
- #t))
- (replace 'build
- (lambda _
- (apply invoke `("scons"
- ,@common-options
- "mongod" "mongo" "mongos"))))
- (replace 'check
- (lambda* (#:key tests? inputs #:allow-other-keys)
- (setenv "TZDIR"
- (string-append (assoc-ref inputs "tzdata")
- "/share/zoneinfo"))
- (when tests?
- ;; Note that with the tests, especially the unittests, the
- ;; build can take up to ~45GB of space, as many tests are
- ;; individual executable files, with some being hundreds of
- ;; megabytes in size.
- (apply invoke `("scons" ,@common-options "dbtest" "unittests"))
- (substitute* "build/unittests.txt"
- ;; TODO: Don't run the async_stream_test, as it hangs
- (("^build\\/opt\\/mongo\\/executor\\/async\\_stream\\_test\n$")
- "")
- ;; TODO: This test fails
- ;; Expected 0UL != disks.size() (0 != 0) @src/mongo/util/procparser_test.cpp:476
- (("^build\\/opt\\/mongo\\/util\\/procparser\\_test\n$")
- ""))
- (invoke "python" "buildscripts/resmoke.py"
- "--suites=dbtest,unittests"
- (format #f "--jobs=~a" (parallel-job-count))))
- #t))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
- (install-file "mongod" bin)
- (install-file "mongos" bin)
- (install-file "mongo" bin))
- #t))))))
- (home-page "https://www.mongodb.org/")
- (synopsis "High performance and high availability document database")
- (description
- "Mongo is a high-performance, high availability, schema-free
-document-oriented database. A key goal of MongoDB is to bridge the gap
-between key/value stores (which are fast and highly scalable) and traditional
-RDBMS systems (which are deep in functionality).")
- (license (list license:agpl3
- ;; Some parts are licensed under the Apache License
- license:asl2.0))))
-
(define-public mycli
(package
(name "mycli")
(append (find-files "extra/wolfssl")
(find-files "zlib")))
#t))))
+ (replacement mariadb/fixed)
(build-system cmake-build-system)
(outputs '("out" "lib" "dev"))
(arguments
as a drop-in replacement of MySQL.")
(license license:gpl2)))
+(define mariadb/fixed
+ (package
+ (inherit mariadb)
+ (source (origin
+ (inherit (package-source mariadb))
+ (patches (search-patches "mariadb-CVE-2021-27928.patch"))))))
+
(define-public mariadb-connector-c
(package
(name "mariadb-connector-c")
developed in C/C++ to MariaDB and MySQL databases.")
(license license:lgpl2.1+)))
+(define-public galera
+ (package
+ (name "galera")
+ (version "26.4.7")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (commit "bac8171266cb982fe013ce496d78085438c6f23e")
+ (url "https://github.com/codership/galera")
+ (recursive? #t)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0h7s670pcasq8wzprhyxqfca2cghi62b8xz2kikb2a86wd453qil"))))
+ (build-system cmake-build-system)
+ (inputs
+ `(("check" ,check)
+ ("boost" ,boost)
+ ("openssl" ,openssl)))
+ (home-page "https://github.com/codership/galera/")
+ (synopsis "Extension to the MariaDB database server")
+ (description
+ "Galera is a wsrep-provider that is used with MariaDB for load-balancing
+and high-availability (HA).")
+ (license license:gpl2))) ;'COPYING' says "version 2" only
+
;; Don't forget to update the other postgresql packages when upgrading this one.
(define-public postgresql-13
(package
;; COPYING contains copy of lgpl2.1 - but copyright notices just say "LGPL"
(home-page "http://www.unixodbc.org")))
+(define-public nanodbc
+ (package
+ (name "nanodbc")
+ (version "2.13.0")
+ (source (origin
+ (method git-fetch)
+ (uri
+ (git-reference
+ (url "https://github.com/nanodbc/nanodbc")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1q80p7yv9mcl4hyvnvcjdr70y8nc940ypf368lp97vpqn5yckkgm"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:configure-flags
+ ;; The tests require ODBC backends to be installed.
+ (list "-DNANODBC_DISABLE_TESTS=ON")
+ #:tests? #false))
+ (inputs
+ `(("unixodbc" ,unixodbc)))
+ (home-page "https://nanodbc.io/")
+ (synopsis "C++ wrapper for the native C ODBC API")
+ (description "The goal for nanodbc is to make developers happy by providing
+a simpler and less verbose API for working with ODBC. Common tasks should be
+easy, requiring concise and simple code.")
+ (license license:expat)))
+
(define-public unqlite
(package
(name "unqlite")
(lambda _
(substitute* "setup.py"
(("pypika>=0\\.44\\.0,<0\\.45\\.0") "pypika")
- (("aiosqlite>=0.16.0,<0.17.0") "aiosqlite"))
+ (("aiosqlite>=0.16.0,<0.17.0") "aiosqlite")
+ (("pytz>=2020\\.4,<2021\\.0") "pytz")
+ ;; Not required, since ciso8601 is used.
+ (("'iso8601>=0\\.1\\.13,<0\\.2\\.0',") ""))
#t)))))
(native-inputs
`(("python-asynctest" ,python-asynctest)
`(("python-aiosqlite" ,python-aiosqlite)
("python-pypika" ,python-pypika)
("python-ciso8601" ,python-ciso8601)
+ ("python-pytz" ,python-pytz)
("python-typing-extensions"
,python-typing-extensions)))
(home-page
is designed to have a low barrier to entry.")
(license license:bsd-2)))
-(define-public python2-rq
- (package-with-python2 python-rq))
-
(define-public python-rq-scheduler
(package
(name "python-rq-scheduler")
the SQL language using a syntax that reflects the resulting query.")
(license license:asl2.0)))
-(define-public mongo-tools
- (package
- (name "mongo-tools")
- (version "3.4.0")
- (source
- (origin (method git-fetch)
- (uri (git-reference
- (url "https://github.com/mongodb/mongo-tools")
- (commit (string-append "r" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1bcsz5cvj39a7nsxsfqmz9igrw33j6yli9kffigqyscs52amw7x1"))))
- (build-system go-build-system)
- (arguments
- `(#:import-path "github.com/mongodb/mongo-tools"
- #:modules ((srfi srfi-1)
- (guix build go-build-system)
- (guix build utils))
- #:install-source? #f
- #:phases
- (let ((all-tools
- '("bsondump" "mongodump" "mongoexport" "mongofiles"
- "mongoimport" "mongooplog" "mongorestore"
- "mongostat" "mongotop")))
- (modify-phases %standard-phases
- (add-after 'unpack 'delete-bundled-source-code
- (lambda _
- (delete-file-recursively
- "src/github.com/mongodb/mongo-tools/vendor")
- #t))
- (add-after 'delete-bundled-source-code 'patch-source
- (lambda _
- ;; Remove a redundant argument that causes compilation to fail.
- (substitute*
- "src/github.com/mongodb/mongo-tools/mongorestore/filepath.go"
- (("skipping restore of system.profile collection\", db)")
- "skipping restore of system.profile collection\")"))
- #t))
- (replace 'build
- (lambda _
- (for-each (lambda (tool)
- (let ((command
- `("go" "build"
- ;; This is where the tests expect to find the
- ;; executables
- "-o" ,(string-append
- "src/github.com/mongodb/mongo-tools/bin/"
- tool)
- "-v"
- "-tags=\"ssl sasl\""
- "-ldflags"
- "-extldflags=-Wl,-z,now,-z,relro"
- ,(string-append
- "src/github.com/mongodb/mongo-tools/"
- tool "/main/" tool ".go"))))
- (simple-format #t "build: running ~A\n"
- (string-join command))
- (apply invoke command)))
- all-tools)
- #t))
- (replace 'check
- (lambda _
- (with-directory-excursion "src"
- (for-each (lambda (tool)
- (invoke
- "go" "test" "-v"
- (string-append "github.com/mongodb/mongo-tools/"
- tool)))
- all-tools))
- #t))
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (for-each (lambda (tool)
- (install-file
- (string-append "src/github.com/mongodb/mongo-tools/bin/"
- tool)
- (string-append (assoc-ref outputs "out")
- "/bin")))
- all-tools)
- #t))))))
- (native-inputs
- `(("go-github.com-howeyc-gopass" ,go-github.com-howeyc-gopass)
- ("go-github.com-jessevdk-go-flags" ,go-github.com-jessevdk-go-flags)
- ("go-golang-org-x-crypto" ,go-golang-org-x-crypto)
- ("go-gopkg.in-mgo.v2" ,go-gopkg.in-mgo.v2)
- ("go-gopkg.in-tomb.v2" ,go-gopkg.in-tomb.v2)
- ("go-github.com-nsf-termbox-go" ,go-github.com-nsf-termbox-go)
- ("go-github.com-smartystreets-goconvey" ,go-github.com-smartystreets-goconvey)))
- (home-page "https://github.com/mongodb/mongo-tools")
- (synopsis "Various tools for interacting with MongoDB and BSON")
- (description
- "This package includes a collection of tools related to MongoDB.
-@table @code
-@item bsondump
-Display BSON files in a human-readable format
-@item mongoimport
-Convert data from JSON, TSV or CSV and insert them into a collection
-@item mongoexport
-Write an existing collection to CSV or JSON format
-@item mongodump/mongorestore
-Dump MongoDB backups to disk in the BSON format
-@item mongorestore
-Read MongoDB backups in the BSON format, and restore them to a live database
-@item mongostat
-Monitor live MongoDB servers, replica sets, or sharded clusters
-@item mongofiles
-Read, write, delete, or update files in GridFS
-@item mongooplog
-Replay oplog entries between MongoDB servers
-@item mongotop
-Monitor read/write activity on a mongo server
-@end table")
- (license license:asl2.0)))
-
;; There are many wrappers for this in other languages. When touching, please
;; be sure to ensure all dependencies continue to build.
(define-public apache-arrow
(base32
"14x2gjblkgpflv75wl144cyjp1sis5rbxnr9r2gj3yw16v2av0bp"))))
(build-system cmake-build-system)
- (inputs
+ (propagated-inputs
+ ;; Headers of soci has include-references to headers of these inputs.
`(("firebird" ,firebird)
("postgresql" ,postgresql)
("sqlite" ,sqlite)
(define-public freetds
(package
(name "freetds")
- (version "1.2.18")
+ (version "1.2.20")
(source
(origin
(method url-fetch)
(uri (string-append "https://www.freetds.org/files/stable/"
"freetds-" version ".tar.gz"))
(sha256
- (base32 "1hspvwxwdd1apadsy2b40dpjik8kfwcvdamvhpg3lnm15n02fb50"))))
+ (base32 "11fzwcahc1bc8npxbif0448v9cwyf7k04167i7fcspmfw7a0hj0d"))))
(build-system gnu-build-system)
(arguments
;; NOTE: (Sharlatan-20210110213908+0000) some tests require DB connection,
HCoop / jackhill / guix / guix.git / blobdiff