gnu: emacs-consult: Fix grammar.

[jackhill/guix/guix.git] / gnu / packages / cran.scm

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 267f809..6f931f0 100644 (file)
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3,7 +3,7 @@
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
 ;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com>
-;;; Copyright © 2016, 2017, 2018, 2020 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
 ;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com>
@@ -1059,6 +1059,25 @@ the embedded @code{RapidXML} C++ library.")
 into a pipeline of data manipulation and visualisation.")
     (license license:gpl3)))
 
+(define-public r-hmm
+  (package
+    (name "r-hmm")
+    (version "1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (cran-uri "HMM" version))
+              (sha256
+               (base32
+                "0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"))))
+    (properties `((upstream-name . "HMM")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/HMM/")
+    (synopsis "Hidden Markov Models")
+    (description "This package provides an easy to use library to setup, apply
+and make inference with discrete time and discrete space hidden Markov
+models.")
+    (license license:gpl2+)))
+
 (define-public r-httpuv
   (package
     (name "r-httpuv")
@@ -9538,10 +9557,10 @@ singular or ill-conditioned Jacobian.")
      `((upstream-name . "PhysicalActivity")))
     (build-system r-build-system)
     (home-page "https://cran.r-project.org/web/packages/PhysicalActivity/")
-    (synopsis "Procesing accelerometer data for physical activity measurement")
+    (synopsis "Processing accelerometer data for physical activity measurement")
     (description
      "This @code{r-physicalactivity} package provides a function @code{wearingMarking}
-for classification of monitor wear and nonwear time intervals in accelerometer
+for classification of monitored wear and nonwear time intervals in accelerometer
 data collected to assess physical activity.  The package also contains functions
 for making plots of accelerometer data and obtaining the summary of various
 information including daily monitor wear time and the mean monitor wear time
@@ -15288,14 +15307,14 @@ tessellation.")
 (define-public r-sf
   (package
     (name "r-sf")
-    (version "0.9-7")
+    (version "0.9-8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "sf" version))
        (sha256
         (base32
-         "175fmnnw11fjhfgjv9sn9b0jfjcqbybpgwsvv99d5yddigvw5jja"))))
+         "096gg2hbynn6mv3w8n69x987fklg5rrgd0d4nbqaw7vhg1jhlmqi"))))
     (build-system r-build-system)
     (inputs
      `(("gdal" ,gdal)
@@ -15325,14 +15344,14 @@ datum transformations.")
 (define-public r-spdep
   (package
     (name "r-spdep")
-    (version "1.1-5")
+    (version "1.1-7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spdep" version))
        (sha256
         (base32
-         "0pbd7wrg5v44p2yxsjp774lpyzap3madir5mn5p3ix7ibk7ldjs7"))))
+         "0sg417d95paww625663lgmk6jwhs88djqzc96gbs1hxazlf77qb1"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-boot" ,r-boot)
@@ -15528,13 +15547,13 @@ lspec, polyclass, and polymars.")
 (define-public r-rms
   (package
     (name "r-rms")
-    (version "6.1-1")
+    (version "6.2-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rms" version))
        (sha256
-        (base32 "1zgfd60lzbakcv7x0i5k3lkw3s0xx5bzssjgangna5lq2j17cdli"))))
+        (base32 "1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-cluster" ,r-cluster)
@@ -16272,14 +16291,14 @@ packages with Rcpp.")
 (define-public r-tweenr
   (package
     (name "r-tweenr")
-    (version "1.0.1")
+    (version "1.0.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tweenr" version))
        (sha256
         (base32
-         "0sq90pbln6lkc2q3zflhkxxwpqdw5dd7igrxhdnlynkdrmi83mpg"))))
+         "17znizh4yabh2zs9mzyr0sl6p0pw49961i61br7cl1b7v9sza18q"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-farver" ,r-farver)
@@ -16376,7 +16395,7 @@ sets of URLs.")
     (description
      "The aim of the ggplot2 package is to aid in visual data investigations.
 This focus has led to a lack of facilities for composing specialized plots.
-Thi package aims to be a collection of mainly new statistics and geometries
+This package aims to be a collection of mainly new statistics and geometries
 that fills this gap.")
     (license license:expat)))
 
@@ -17186,14 +17205,14 @@ batch correction, and data correction.")
 (define-public r-styler
   (package
     (name "r-styler")
-    (version "1.3.2")
+    (version "1.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "styler" version))
        (sha256
         (base32
-         "1waglhsy2c53qjgd2qhlzda3z0lbzbwx9fkrfhac41y6h91mgkrz"))))
+         "10fj4cnazicb2z9djbv5pszcmrf7wbzagbjvksffqpdc5vbbbw5x"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-backports" ,r-backports)
@@ -17207,6 +17226,8 @@ batch correction, and data correction.")
        ("r-tibble" ,r-tibble)
        ("r-withr" ,r-withr)
        ("r-xfun" ,r-xfun)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/r-lib/styler")
     (synopsis "Non-invasive pretty printing of R code")
     (description
@@ -17460,14 +17481,14 @@ classification and regression models.")
 (define-public r-dae
   (package
     (name "r-dae")
-    (version "3.1-32")
+    (version "3.1-37")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "dae" version))
        (sha256
         (base32
-         "126w1lb9pz8mb2ajl2vz5dj798nbifp0dypnzfgcwixif5g5bpqi"))))
+         "102fgbdpn7yvm1zj180cv4sr1096sz35d4gndsv7w9kriqyi1c1l"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
@@ -17499,14 +17520,14 @@ been used in the call to @code{aov}.")
 (define-public r-dalex
   (package
     (name "r-dalex")
-    (version "2.1.1")
+    (version "2.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "DALEX" version))
        (sha256
         (base32
-         "1dnqsml94s648w8swsrq8spddnd4mj5pl3q6xxr917w6a1jxgyfz"))))
+         "1qnjbhilv4jfmwqxfi9xc5ysrh8gr84a2a5imjfci7d1n3zcnryn"))))
     (properties `((upstream-name . "DALEX")))
     (build-system r-build-system)
     (propagated-inputs
@@ -19579,14 +19600,14 @@ discussed in Reisen et al. (2017) @url{doi:10.1016/j.jspi.2017.02.008}.")
 (define-public r-gamlss-data
   (package
     (name "r-gamlss-data")
-    (version "5.1-4")
+    (version "6.0-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gamlss.data" version))
        (sha256
         (base32
-         "1dgfspbmps6ipzcmw681wjdp320nm50dwsxafgrcwxndqgc7fdqd"))))
+         "1cjb2n5i5mnhmb5qbqycdbfg65j7nxb9s74yihqs9kpa39byrzcq"))))
     (properties `((upstream-name . "gamlss.data")))
     (build-system r-build-system)
     (home-page "http://www.gamlss.org/")
@@ -19600,14 +19621,14 @@ models.")
 (define-public r-gamlss
   (package
     (name "r-gamlss")
-    (version "5.3-1")
+    (version "5.3-4")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gamlss" version))
        (sha256
         (base32
-         "1ngf6g4zixwm6ni5r0fs0f6132xd2f2a6mlski9hlqnvvwb46iwr"))))
+         "06mh00jjxnqwknbv777hawjk0zm81ixrp35fg59mrlqz8y3p2w3j"))))
     (properties `((upstream-name . "gamlss")))
     (build-system r-build-system)
     (propagated-inputs
@@ -20811,14 +20832,14 @@ API; see the package vignette for details.")
 (define-public r-actuar
   (package
     (name "r-actuar")
-    (version "3.1-1")
+    (version "3.1-2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "actuar" version))
        (sha256
         (base32
-         "0sxn1mskh7x164f1vbrqnadgxnq7y2p3a9mlmqc0sp6cqkw9lhp9"))))
+         "0gaqm8bkjly2b1jkr1nqnxlp5vqvfpj0a4jd70jv4f9ndlif676y"))))
     (properties `((upstream-name . "actuar")))
     (build-system r-build-system)
     (propagated-inputs `(("r-expint" ,r-expint)))
@@ -20888,14 +20909,14 @@ number embedded in the file rather than the file extension.")
 (define-public r-imager
   (package
     (name "r-imager")
-    (version "0.42.7")
+    (version "0.42.8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "imager" version))
        (sha256
         (base32
-         "1dq0rblnrmnk689bcdmml179gk9lff8x92s2npkjllgjq5q2vfpd"))))
+         "1kzl93l6k9i4528bbycbqxdn28mj7hnx0fbxisva859xl1wys5c5"))))
     (properties `((upstream-name . "imager")))
     (build-system r-build-system)
     (inputs
@@ -21037,14 +21058,14 @@ functions.")
 (define-public r-univoutl
   (package
     (name "r-univoutl")
-    (version "0.2")
+    (version "0.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "univOutl" version))
        (sha256
         (base32
-         "0rlc3w7cx2hfxacpjs9kmjzv5p8v9wxnlpxi3rh276wiy5zdr91v"))))
+         "1hhpxrpmp2wbrynx9xjndnp2sccirgky2x6ksd6yk6phmk0rbzjp"))))
     (properties `((upstream-name . "univOutl")))
     (build-system r-build-system)
     (propagated-inputs
@@ -21252,14 +21273,14 @@ different conceptual parts of the algorithm.")
 (define-public r-shapes
   (package
     (name "r-shapes")
-    (version "1.2.5")
+    (version "1.2.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "shapes" version))
        (sha256
         (base32
-         "0gfpdydfysp5mwg7qmkn73s67gvh2szb40mzqrx97h41ijgcgd8s"))))
+         "1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"))))
     (properties `((upstream-name . "shapes")))
     (build-system r-build-system)
     (propagated-inputs
@@ -22052,32 +22073,23 @@ Norwegian, Portuguese, Romanian, Russian, Spanish, Swedish and Turkish.")
 (define-public r-quanteda
   (package
     (name "r-quanteda")
-    (version "2.1.2")
+    (version "3.0.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "quanteda" version))
        (sha256
         (base32
-         "13rjwgmg5v1dbryrs9ifyy76s5ib6wrbrm2y5af44vhf1h6p9cvy"))))
+         "0b1jfkdhpsg5jhjz4p0nf4cmi9p8w40wv3i2f17jf2x1n1y2hjj8"))))
     (properties `((upstream-name . "quanteda")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-data-table" ,r-data-table)
-       ("r-digest" ,r-digest)
-       ("r-extrafont" ,r-extrafont)
-       ("r-fastmatch" ,r-fastmatch)
-       ("r-ggplot2" ,r-ggplot2)
-       ("r-ggrepel" ,r-ggrepel)
-       ("r-jsonlite" ,r-jsonlite)
+     `(("r-fastmatch" ,r-fastmatch)
        ("r-magrittr" ,r-magrittr)
        ("r-matrix" ,r-matrix)
-       ("r-network" ,r-network)
-       ("r-proxyc" ,r-proxyc)
        ("r-rcpp" ,r-rcpp)
        ("r-rcpparmadillo" ,r-rcpparmadillo)
        ("r-rcppparallel" ,r-rcppparallel)
-       ("r-sna" ,r-sna)
        ("r-snowballc" ,r-snowballc)
        ("r-stopwords" ,r-stopwords)
        ("r-stringi" ,r-stringi)
@@ -22846,14 +22858,14 @@ interesting features. iheatmapr uses the plotly library for interactivity.")
 (define-public r-packrat
   (package
     (name "r-packrat")
-    (version "0.5.0")
+    (version "0.6.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "packrat" version))
        (sha256
         (base32
-         "1xy5dd2hrpqa07jfl4s7dsrya05mf36ms74j833scdz0zf89586n"))))
+         "01cn2vf95nc8bh0hh8imkn030yra3hx64q1fb8jwsr52p9s397fr"))))
     (properties `((upstream-name . "packrat")))
     (build-system r-build-system)
     (home-page "https://github.com/rstudio/packrat/")
@@ -23522,17 +23534,19 @@ appropriate dog and cat images for many status codes.")
 (define-public r-latex2exp
   (package
     (name "r-latex2exp")
-    (version "0.4.0")
+    (version "0.5.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "latex2exp" version))
               (sha256
                (base32
-                "12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"))))
+                "0qknpw7zwwbzsbry94j8fn48mq7kq5rc5448g9hybbisain3wfvg"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-stringr" ,r-stringr)
        ("r-magrittr" ,r-magrittr)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/stefano-meschiari/latex2exp/")
     (synopsis "Use LaTeX expressions in plots")
     (description "@code{latex2exp} parses and converts LaTeX math formulas to
@@ -24392,14 +24406,14 @@ input.")
 (define-public r-lightgbm
   (package
     (name "r-lightgbm")
-    (version "3.1.1")
+    (version "3.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "lightgbm" version))
        (sha256
         (base32
-         "1pwsh6j9ksahh58b15j5ij56bsc6syy3z4k4a5zhy5n7829rz555"))))
+         "0aw1zcrg7nhddfaif9544hn8g8qcylv6vzpkf8d3kl07nzvgxkvj"))))
     (properties `((upstream-name . "lightgbm")))
     (build-system r-build-system)
     (propagated-inputs
@@ -24428,14 +24442,14 @@ designed to be distributed and efficient with the following goals:
 (define-public r-shapforxgboost
   (package
     (name "r-shapforxgboost")
-    (version "0.1.0")
+    (version "0.1.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "SHAPforxgboost" version))
        (sha256
         (base32
-         "0jgyss9bawl7sf4dwa75sn7ld3mvrrr0z2074lbkq3f5qb9gwsly"))))
+         "106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"))))
     (properties
      `((upstream-name . "SHAPforxgboost")))
     (build-system r-build-system)
@@ -24446,9 +24460,10 @@ designed to be distributed and efficient with the following goals:
        ("r-ggforce" ,r-ggforce)
        ("r-ggplot2" ,r-ggplot2)
        ("r-ggpubr" ,r-ggpubr)
-       ("r-lightgbm" ,r-lightgbm)
        ("r-rcolorbrewer" ,r-rcolorbrewer)
        ("r-xgboost" ,r-xgboost)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/liuyanguu/SHAPforxgboost")
     (synopsis "SHAP Plots for XGBoost")
     (description
@@ -24780,14 +24795,14 @@ diagonals.  This package allows you to compute the tensor product of arrays.")
 (define-public r-spatstat-utils
   (package
     (name "r-spatstat-utils")
-    (version "2.0-0")
+    (version "2.1-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.utils" version))
        (sha256
         (base32
-         "1li0vksxpkvgyx3j2wi40kj5687vwakkfdix6icm6g01a0lb2m5d"))))
+         "18gqsc1a85pk69aifi10wprv1c0lci3zxp4wqjb27dlmlbz6jdgd"))))
     (properties
      `((upstream-name . "spatstat.utils")))
     (build-system r-build-system)
@@ -24801,14 +24816,14 @@ which may also be useful for other purposes.")
 (define-public r-spatstat-sparse
   (package
     (name "r-spatstat-sparse")
-    (version "1.2-1")
+    (version "2.0-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.sparse" version))
        (sha256
         (base32
-         "1w312q7gxzchigxxzk9akscdsz66j5085lgjryamschjgp4f8yk2"))))
+         "1iqrpazb88s4w208adf2qgm4ajwz3kwqck65k9g5l28zw9jcxyr7"))))
     (properties
      `((upstream-name . "spatstat.sparse")))
     (build-system r-build-system)
@@ -24828,14 +24843,14 @@ matrix calculations that are common in statistics, such as quadratic forms.")
 (define-public r-spatstat-data
   (package
     (name "r-spatstat-data")
-    (version "2.0-0")
+    (version "2.1-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.data" version))
        (sha256
         (base32
-         "1z1jb1yzb7qhfg55dhzcrdvn5x8hpg9xif0hpnapddbmhxd1hbb7"))))
+         "0csmz5vjaxnznkbsfah8qd3v8p0y56jvis01ialxzvf71snl160v"))))
     (properties `((upstream-name . "spatstat.data")))
     (build-system r-build-system)
     (propagated-inputs
@@ -24851,21 +24866,20 @@ package.")
 (define-public r-spatstat-geom
   (package
     (name "r-spatstat-geom")
-    (version "1.65-5")
+    (version "2.0-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.geom" version))
        (sha256
         (base32
-         "0g0m5b3nbzpyblbp77n56k6aiw3fn23jkk72h9fhqlg1ydn2fzpk"))))
+         "1r7nlgh62apchidg28fxq1a22iv1b29y5xmsg1kjwfvkbq8zxsvh"))))
     (properties `((upstream-name . "spatstat.geom")))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-deldir" ,r-deldir)
        ("r-polyclip" ,r-polyclip)
        ("r-spatstat-data" ,r-spatstat-data)
-       ("r-spatstat-sparse" ,r-spatstat-sparse)
        ("r-spatstat-utils" ,r-spatstat-utils)))
     (home-page "http://spatstat.org/")
     (synopsis "Geometrical functionality of the spatstat package")
@@ -24878,14 +24892,14 @@ for the geometry of linear networks.")
 (define-public r-spatstat-core
   (package
     (name "r-spatstat-core")
-    (version "1.65-5")
+    (version "2.0-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.core" version))
        (sha256
         (base32
-         "0wq61sd53hwyk3fzjdc2prrr66n67zbwb5i3ii7kvyhfwx0xikm3"))))
+         "19wv27nfx48xkqa1amys4jf93k0d8xns20p84n5kqyibscdsksgx"))))
     (properties `((upstream-name . "spatstat.core")))
     (build-system r-build-system)
     (propagated-inputs
@@ -24910,14 +24924,14 @@ user-level code from spatstat, except for the code for linear networks.")
 (define-public r-spatstat-linnet
   (package
     (name "r-spatstat-linnet")
-    (version "1.65-3")
+    (version "2.1-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.linnet" version))
        (sha256
         (base32
-         "1y088r26h5yv006ydgcb4iwpvnc7ql857gky0hbi7xqqciqr8wdv"))))
+         "1ia0qgggddiwhhyd3q516f3p6by0p4xnq26wqz7410n2ja60bbb4"))))
     (properties
      `((upstream-name . "spatstat.linnet")))
     (build-system r-build-system)
@@ -24937,14 +24951,14 @@ for spatial data on a linear network.")
 (define-public r-spatstat
   (package
     (name "r-spatstat")
-    (version "2.0-1")
+    (version "2.1-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat" version))
        (sha256
         (base32
-         "1xq11ijc0d0lbixxb3wnvyr4gplfj2d2i64ynsa089xd525zzzbw"))))
+         "0vr5md53247v6crvjvg9m82vc6h914zzvkzfkga8x79hv35ii4as"))))
     (properties `((upstream-name . "spatstat")))
     (build-system r-build-system)
     (propagated-inputs
@@ -24998,14 +25012,14 @@ for linear mixed models (AIREML).")
 (define-public r-cpp11
   (package
     (name "r-cpp11")
-    (version "0.2.6")
+    (version "0.2.7")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cpp11" version))
        (sha256
         (base32
-         "118i8s7978vl9xyhnb47wcbd6rcc6b958mq2w8s3rdsd4pxv62gz"))))
+         "1m31yq3kn5wqvm0ahj08kb4bszbbhfybx3l2x975cjzgv3058h8x"))))
     (properties `((upstream-name . "cpp11")))
     (build-system r-build-system)
     (native-inputs `(("r-knitr" ,r-knitr)))
@@ -25183,14 +25197,14 @@ to speed up repeated queries of the same set of target points.")
 (define-public r-muhaz
   (package
     (name "r-muhaz")
-    (version "1.2.6.1")
+    (version "1.2.6.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "muhaz" version))
        (sha256
         (base32
-         "08qh43zx6h3yby44q2vxphfvmfdmqxpgyp0734yn341sy9n8pkkk"))))
+         "1lzc8arbpcxgfap3dfsgq8crpp1cxd9qlbrhvyvl79zgpxjqx4q2"))))
     (properties `((upstream-name . "muhaz")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25655,14 +25669,14 @@ workflow.  The advantages are:
 (define-public r-yardstick
   (package
     (name "r-yardstick")
-    (version "0.0.7")
+    (version "0.0.8")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "yardstick" version))
        (sha256
         (base32
-         "1yrvlhn4gxyn9f20z5yv3xam0j0a8z362jwa32r33r0g0jk5z2fq"))))
+         "13b0lyj2k0r568mwlyz9yvp9156rzlj4jqnjazaffh9vwqh4whir"))))
     (properties `((upstream-name . "yardstick")))
     (build-system r-build-system)
     (propagated-inputs
@@ -25670,7 +25684,8 @@ workflow.  The advantages are:
        ("r-generics" ,r-generics)
        ("r-proc" ,r-proc)
        ("r-rlang" ,r-rlang)
-       ("r-tidyselect" ,r-tidyselect)))
+       ("r-tidyselect" ,r-tidyselect)
+       ("r-vctrs" ,r-vctrs)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/tidymodels/yardstick")
@@ -25709,18 +25724,19 @@ observations.")
 (define-public r-slider
   (package
     (name "r-slider")
-    (version "0.1.5")
+    (version "0.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "slider" version))
        (sha256
         (base32
-         "1x4jwfxam4czfkb1s5qds5krfw1h2p5a4rh6f5z4yvhsv0d81xck"))))
+         "1jijh8f3qcn8fa677sqvgl2fb4r5vca1cw4l2vbcqscxb2hr4bqw"))))
     (properties `((upstream-name . "slider")))
     (build-system r-build-system)
     (propagated-inputs
-     `(("r-glue" ,r-glue)
+     `(("r-ellipsis" ,r-ellipsis)
+       ("r-glue" ,r-glue)
        ("r-rlang" ,r-rlang)
        ("r-vctrs" ,r-vctrs)
        ("r-warp" ,r-warp)))
@@ -25903,28 +25919,29 @@ results.")
 (define-public r-tidyposterior
   (package
     (name "r-tidyposterior")
-    (version "0.0.3")
+    (version "0.1.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tidyposterior" version))
        (sha256
         (base32
-         "0wsv800w056ziqbnwal7ncmdy4li8cn5yrdx07w35b7j8kl4mwhg"))))
+         "1h1664sjrg6akph6nrk8ynn2kjiswv6gshy35gamam1h4axf6wah"))))
     (properties `((upstream-name . "tidyposterior")))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-dplyr" ,r-dplyr)
        ("r-generics" ,r-generics)
        ("r-ggplot2" ,r-ggplot2)
-       ("r-lifecycle" ,r-lifecycle)
        ("r-purrr" ,r-purrr)
        ("r-rlang" ,r-rlang)
        ("r-rsample" ,r-rsample)
        ("r-rstanarm" ,r-rstanarm)
        ("r-tibble" ,r-tibble)
        ("r-tidyr" ,r-tidyr)
-       ("r-vctrs" ,r-vctrs)))
+       ("r-tune" ,r-tune)
+       ("r-vctrs" ,r-vctrs)
+       ("r-workflowsets" ,r-workflowsets)))
     (native-inputs
      `(("r-knitr" ,r-knitr)))
     (home-page "https://tidyposterior.tidymodels.org")
@@ -26320,14 +26337,14 @@ phylogenetic relatedness) can also be conducted.")
 (define-public r-altmeta
   (package
     (name "r-altmeta")
-    (version "3.2")
+    (version "3.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "altmeta" version))
        (sha256
         (base32
-         "0z252lbsknqp33i0b0xf5r7spr535iq47bv40vgip6nsqhgrl7b0"))))
+         "1xq12hnzxh7kgv2i36xprg4lkvqfmxwz3sq4a1jlq2d5g3narvcm"))))
     (properties `((upstream-name . "altmeta")))
     (build-system r-build-system)
     (propagated-inputs
@@ -26382,14 +26399,14 @@ covariate (usually group indicator) and the scores.")
 (define-public r-qtl
   (package
     (name "r-qtl")
-    (version "1.47-9")
+    (version "1.48-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "qtl" version))
        (sha256
         (base32
-         "0hffirsvw9j82cdx6l7vhqn3a7ab52claqjlinv3lswl1nsfg93b"))))
+         "098mgmfj8ndi8yipr9b3f6gbbh78cgp9j7y561nlnhrnyc8bsih9"))))
     (build-system r-build-system)
     (home-page "https://rqtl.org/")
     (synopsis "R package for analyzing QTL experiments in genetics")
@@ -26598,14 +26615,14 @@ discovery of differentially expressed genes and markers.")
 (define-public r-phangorn
   (package
     (name "r-phangorn")
-    (version "2.5.5")
+    (version "2.6.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "phangorn" version))
        (sha256
         (base32
-         "0ihkaykqjmf80d8wrk3saphxvnv58zma6pd13633bd3cwanc33f5"))))
+         "08yqz8qlw960x4b52wzrm22f242xnpc8695pjkhy7bi1nzm303ga"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ape" ,r-ape)
@@ -26615,6 +26632,8 @@ discovery of differentially expressed genes and markers.")
        ("r-matrix" ,r-matrix)
        ("r-quadprog" ,r-quadprog)
        ("r-rcpp" ,r-rcpp)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://github.com/KlausVigo/phangorn")
     (synopsis "Phylogenetic analysis in R")
     (description
@@ -26874,13 +26893,13 @@ are.")
 (define-public r-mlr3misc
   (package
     (name "r-mlr3misc")
-    (version "0.7.0")
+    (version "0.8.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3misc" version))
               (sha256
                (base32
-                "19k3l2d6wnqvdng0m7p54rrlvwl5457lcy7bg82m2bbpqxi8qch3"))))
+                "0mzicqs8rhzppyd7v3ljqs35k8pp7p2jg5cs7hx21mxr831bwsys"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-backports" ,r-backports)
@@ -26960,13 +26979,13 @@ computational operations, add-on packages provide additional functionality.")
 (define-public r-mlr3learners
   (package
     (name "r-mlr3learners")
-    (version "0.4.3")
+    (version "0.4.5")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "mlr3learners" version))
               (sha256
                (base32
-                "1wxlpzz3hpkn77n4ag1v868dmp140j1pmrhynsv5xfgk9fg0w7ri"))))
+                "02v4y32yn1m0akkqzhfg65ib21rgy9iz8db4kdcrvi949clkxnfk"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-data-table" ,r-data-table)
@@ -26986,14 +27005,14 @@ vector machines, and gradient boosting.")
 (define-public r-bbotk
   (package
     (name "r-bbotk")
-    (version "0.3.1")
+    (version "0.3.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bbotk" version))
        (sha256
         (base32
-         "1f29wxnxr73c4yp5afk05jqggpm7k1z8wiak8xsyw68h7xflq550"))))
+         "0bd9nxfgsj4ixpgky1mj6knb8l8nivvxpqpyw8vgpkj0za7gp4gr"))))
     (properties `((upstream-name . "bbotk")))
     (build-system r-build-system)
     (propagated-inputs
@@ -27315,14 +27334,14 @@ clusterings as resolution increases.")
 (define-public r-textshaping
   (package
     (name "r-textshaping")
-    (version "0.3.2")
+    (version "0.3.3")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "textshaping" version))
        (sha256
         (base32
-         "0fqh4z505b2qriqcj70g2hhdgiawd3w2rs9rqxdwizz5vk8jjygx"))))
+         "0yl3cv6r8k27h4lzbrsikjydhz94skdjmxx4zqzihvb7h3jfnlpn"))))
     (properties `((upstream-name . "textshaping")))
     (build-system r-build-system)
     (inputs
@@ -27348,14 +27367,14 @@ the font tool-set provided by the @code{systemfonts} package.")
 (define-public r-ragg
   (package
     (name "r-ragg")
-    (version "1.1.1")
+    (version "1.1.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ragg" version))
        (sha256
         (base32
-         "0nh1xxrxgdbq9anzkc6k3n519czp9hqyiizakm3m2gl4l4w0vp0q"))))
+         "0q28bwjdxpxm1wlkd8sxdf1m1q8wp4mmzp83d3m09nyy90ydkd8w"))))
     (properties `((upstream-name . "ragg")))
     (build-system r-build-system)
     (inputs
@@ -28016,28 +28035,30 @@ and formatted text files with additional meta-data, such including @code{.csv},
 (define-public r-lwgeom
   (package
     (name "r-lwgeom")
-    (version "0.2-5")
+    (version "0.2-6")
     (source
-      (origin
-        (method url-fetch)
-        (uri (cran-uri "lwgeom" version))
-        (sha256
-          (base32
-            "0byhjqa2acns8mznl1ngnfygxxxyszvnq66qfg0smhhhdkwr67aa"))))
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "lwgeom" version))
+       (sha256
+        (base32
+         "1733iwinn426bcmgjxp4j0scvbz35rvqkanmw7g7f47l6j7w14vn"))))
     (properties `((upstream-name . "lwgeom")))
     (build-system r-build-system)
-    (inputs `(("geos" ,geos) ("proj" ,proj) ("sqlite" ,sqlite)))
+    (inputs
+     `(("geos" ,geos)
+       ("proj" ,proj)
+       ("sqlite" ,sqlite)
+       ("zlib" ,zlib)))
     (propagated-inputs
-      `(("r-rcpp" ,r-rcpp)
-        ("r-sf" ,r-sf)
-        ("r-units" ,r-units)))
+     `(("r-rcpp" ,r-rcpp)
+       ("r-sf" ,r-sf)
+       ("r-units" ,r-units)))
     (native-inputs `(("pkg-config" ,pkg-config)))
-    (home-page
-      "https://github.com/r-spatial/lwgeom/")
-    (synopsis
-      "Bindings to Selected 'liblwgeom' Functions for Simple Features")
+    (home-page "https://github.com/r-spatial/lwgeom/")
+    (synopsis "Bindings to Selected 'liblwgeom' Functions for Simple Features")
     (description
-      "Access to selected functions found in
+     "Access to selected functions found in
 @url{https://github.com/postgis/postgis/tree/master/liblwgeom,liblwgeom}, the
 light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
     (license license:gpl2)))
@@ -28045,14 +28066,14 @@ light-weight geometry library used by @url{http://postgis.net/,PostGIS}.")
 (define-public r-stars
   (package
     (name "r-stars")
-    (version "0.5-1")
+    (version "0.5-2")
     (source
       (origin
         (method url-fetch)
         (uri (cran-uri "stars" version))
         (sha256
           (base32
-            "0ybk899rc0rpf2cv5kwk78fvis5xnr255hfcy5khdxsxdqgl0m9j"))))
+            "0w2svw02ywvclq0nsnjns1n0rfr54q7x30y64y14n7zfr969ly1n"))))
     (properties `((upstream-name . "stars")))
     (build-system r-build-system)
     (propagated-inputs
@@ -28315,3 +28336,29 @@ indicator, a quantitative variable or a survival time.")
 differential expression analysis, RNAseq data and related problems.")
     ;; Any version of the LGPL
     (license license:lgpl3+)))
+
+(define-public r-randomforestsrc
+  (package
+    (name "r-randomforestsrc")
+    (version "2.9.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "randomForestSRC" version))
+       (sha256
+        (base32
+         "05ifvj49jv0n5p6k46milpgj9r10sc5aw23fypyyibdgwpwvwixw"))))
+    (properties
+     `((upstream-name . "randomForestSRC")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/randomForestSRC/")
+    (synopsis "Random forests for survival, regression, and classification")
+    (description
+     "This package implements fast OpenMP parallel computing of Breiman's
+random forests for survival, competing risks, regression and classification
+based on Ishwaran and Kogalur's popular random survival forests (RSF) package.
+It handles missing data and now includes multivariate, unsupervised forests,
+quantile regression and solutions for class imbalanced data.  It provides a
+fast interface using subsampling and confidence regions for variable
+importance.")
+    (license license:gpl3+)))