;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2016, 2017 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017 Kyle Meyer <kyle@kyleam.com>
-;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Alex Kost <alezost@gmail.com>
;;; Copyright © 2018 Alex Branham <alex.branham@gmail.com>
;;;
(define-public libxls
(package
(name "libxls")
- (version "1.5.1")
+ (version "1.5.2")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/libxls/libxls/releases/download/"
"v" version "/libxls-" version ".tar.gz"))
(sha256
- (base32 "0dam8qgbc5ykzaxmrjhpmfm8lnlcdk6cbpzyaya91qwwa80qbj1v"))))
+ (base32 "1akadsyl10rp101ccjmrxr7933c3v641k377bn74jv6cdkcm4zld"))))
(build-system gnu-build-system)
(home-page "https://github.com/libxls/libxls")
(synopsis "Read binary (.xls) Excel spreadsheet files")
(define r-with-tests
(package
(name "r-with-tests")
- (version "3.6.1")
+ (version "3.6.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
version ".tar.gz"))
(sha256
(base32
- "128kifbq0w25y8aq77w289ddax5i5w2djcfsqgffrb3i7syrxajv"))))
+ "0m69pfi0nxyriyb2yz74xfzaxwfkinnf9kpvf1rz727vvmfa8rdx"))))
(build-system gnu-build-system)
(arguments
`(#:disallowed-references (,tzdata-for-tests)
("openblas" ,openblas)
("gfortran" ,gfortran)
("icu4c" ,icu4c)
- ("libjpeg" ,libjpeg)
+ ("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
("libtiff" ,libtiff)
("libxt" ,libxt)
(define-public r-mass
(package
(name "r-mass")
- (version "7.3-51.4")
+ (version "7.3-51.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "MASS" version))
(sha256
(base32
- "0x1ckf51y851g0kvbhsgdxb26vfpmbw3xdbcnh3ck7fjm13da4cr"))))
+ "1k0m7pa4gb5apzrrkb5kx5d7bmkm2pl5g15vwb6j067hrqahck26"))))
(properties `((upstream-name . "MASS")))
(build-system r-build-system)
(home-page "http://www.stats.ox.ac.uk/pub/MASS4/")
(define-public r-foreign
(package
(name "r-foreign")
- (version "0.8-72")
+ (version "0.8-75")
(source
(origin
(method url-fetch)
(uri (cran-uri "foreign" version))
(sha256
(base32
- "124c9229is44p2rv7xyh2q86nsfi7vzyyh5n3c5ihziqrp4ig723"))))
+ "0g4mi101srjbl17ydb2hl3854m3xj0llj6861lfr30sp08nkqavl"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/foreign")
(synopsis "Read data stored by other statistics software")
(define-public r-bit
(package
(name "r-bit")
- (version "1.1-14")
+ (version "1.1-15.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "bit" version))
(sha256
(base32
- "0m7jrqzpa1pk8ixcl814x06jf96nlvvr16x6did6cfk4zghsrfjw"))))
+ "0y351ajlrn9ywbiai46mjpwmw5pqc9ik2z24rf0bnbdcvaxdr7r8"))))
(build-system r-build-system)
(home-page "http://ff.r-forge.r-project.org")
(synopsis "Class for vectors of 1-bit booleans")
(define-public r-stringi
(package
(name "r-stringi")
- (version "1.4.3")
+ (version "1.4.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "stringi" version))
(sha256
(base32
- "1vbr6g9p1iyzdj7wfw6afyizvnd1a2srfvkl72pq23vhdcwwpkhk"))))
+ "0gdmdf4i3ik8rcs7af1vlsfnilcmw3z28jx4278rpq2asigps89k"))))
(build-system r-build-system)
(inputs `(("icu4c" ,icu4c)))
(native-inputs `(("pkg-config" ,pkg-config)))
(define-public r-bh
(package
(name "r-bh")
- (version "1.72.0-1")
+ (version "1.72.0-3")
(source (origin
(method url-fetch)
(uri (cran-uri "BH" version))
(sha256
(base32
- "1cm3gawky0dlfj8awv356j3f5pfv732rz10wlfnix2s2xf5cdz4a"))))
+ "1ay8vb6i730lipg8b8g3893vqglhw2kqpc29lwdrxdkb66iw33l8"))))
(build-system r-build-system)
(home-page "https://github.com/eddelbuettel/bh")
(synopsis "R package providing subset of Boost headers")
(define-public r-mime
(package
(name "r-mime")
- (version "0.7")
+ (version "0.8")
(source (origin
(method url-fetch)
(uri (cran-uri "mime" version))
(sha256
(base32
- "12vpip67ajb90b8p96w43ir7mavrw2i61bwvpfnrlmlj9kj3w20i"))))
+ "18w98prfbivvygiyamsf9yg090kzbnvw2fn9b27823gmis4d08ny"))))
(build-system r-build-system)
(home-page "https://github.com/yihui/mime")
(synopsis "R package to map filenames to MIME types")
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.26")
+ (version "1.27")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "08f3bdd5cnnbigybr9vmkhq12n64pbmn4layl3w5rwk8xi5kbnrq"))))
+ "02nysgnx6xv0kd351s1d59yx4g0drsd9lmcgxs0rsw5f1jiycgdg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
(define-public r-rlang
(package
(name "r-rlang")
- (version "0.4.2")
+ (version "0.4.3")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "0fczcp17kaz3s4p0nd4126bppwl20vpxfybhsndpcky9h75wklgv"))))
+ "0qsqfikbsj55x5brghnkzzp7pz0japr4xnzm993f668mlls3f6i4"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
(define-public python-patsy
(package
(name "python-patsy")
- (version "0.4.1")
+ (version "0.5.1")
(source (origin
(method url-fetch)
- (uri (pypi-uri "patsy" version ".zip"))
+ (uri (pypi-uri "patsy" version))
(sha256
(base32
- "1m6knyq8hbqlx242y4da02j0x86j4qggs1j7q186w3jv0j0c476w"))))
+ "149rbrdzwns0ay88caf1zsm1r53v1q5np1mrb36na50y432cw5gi"))))
(build-system python-build-system)
(arguments
`(#:phases
("python-scipy" ,python-scipy)
("python-six" ,python-six)))
(native-inputs
- `(("python-nose" ,python-nose)
- ("unzip" ,unzip)))
+ `(("python-nose" ,python-nose)))
(home-page "https://github.com/pydata/patsy")
(synopsis "Describe statistical models and build design matrices")
(description
(define-public r-hms
(package
(name "r-hms")
- (version "0.5.2")
+ (version "0.5.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "hms" version))
(sha256
(base32
- "0h24dsagn4kcr65arn73mpqapcg002kw4kyxfqyff95j6s6cjifl"))))
+ "1baki0qw5ijgiflvsdvqj3apg4yanf12vx14kwbqdzk5rz46fasf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rlang" ,r-rlang)
(define-public r-latticeextra
(package
(name "r-latticeextra")
- (version "0.6-28")
+ (version "0.6-29")
(source
(origin
(method url-fetch)
(uri (cran-uri "latticeExtra" version))
(sha256
(base32
- "1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"))))
+ "04fzwcqs594rk5qp98yilh3kdh3sw4xf8wld5rp94ggpaqfw7bbc"))))
(properties `((upstream-name . "latticeExtra")))
(build-system r-build-system)
(propagated-inputs
- `(("r-lattice" ,r-lattice)
+ `(("r-jpeg" ,r-jpeg)
+ ("r-lattice" ,r-lattice)
+ ("r-png" ,r-png)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "http://latticeextra.r-forge.r-project.org/")
(synopsis "Extra graphical utilities based on lattice")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.9.800.3.0")
+ (version "0.9.800.4.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "0kpcspg3mafi5kncjfhnbcwimvlf19jvrxilvhbpd20sap473mh3"))))
+ "1csh54v4d0ccwmk4bqj4rca1d5rqpafvb4459x3q6k9sys0charx"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
;; All needed for vignettes
(define-public r-catools
(package
(name "r-catools")
- (version "1.17.1.3")
+ (version "1.18.0")
(source (origin
(method url-fetch)
(uri (cran-uri "caTools" version))
(sha256
(base32
- "04m7vbydxb1nipday97w29p2miykyzxw572j9lda6jxmmp2kb1yp"))))
+ "0y1kgyiy322yhb0phzwvf2zgjz9awp13lhzhk9v1ddg88656jhq3"))))
(properties `((upstream-name . "caTools")))
(build-system r-build-system)
(propagated-inputs
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "2.0")
+ (version "2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
- (base32 "1bm3n17wa0pf1cq7qmwhbnn02x2pld7zzmmzjcvwy6apanch9fl7"))))
+ (base32 "0pa5xs0vzwn9vsgysjqbks9v5lbqphxh5agciskllibc40hhwigg"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
(define-public r-blob
(package
(name "r-blob")
- (version "1.2.0")
+ (version "1.2.1")
(source (origin
(method url-fetch)
(uri (cran-uri "blob" version))
(sha256
(base32
- "08z071jzac4gasgfgab0y5g3ilfmlw08ln813wphxg07hsiczw8s"))))
+ "1slb5mvxfyi92i8ifx2qa31hp57inilwhq1g9lzvgha6jrxbqm7g"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-prettyunits" ,r-prettyunits)
- ("r-rlang" ,r-rlang)
+ `(("r-rlang" ,r-rlang)
("r-vctrs" ,r-vctrs)))
(home-page "https://github.com/hadley/blob")
(synopsis "Simple S3 Class for representing vectors of binary data")
(define-public r-rsqlite
(package
(name "r-rsqlite")
- (version "2.1.4")
+ (version "2.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RSQLite" version))
(sha256
(base32
- "1vhaq6zfqilya669l100adcw51xz0p370zabnk2dnk1xhdih1f34"))))
+ "1m38sj8rwbf3p2lhqabcp7c7djk7s9ng37cz39yxk706v9pi4380"))))
(properties `((upstream-name . "RSQLite")))
(build-system r-build-system)
(propagated-inputs
(define-public r-xml
(package
(name "r-xml")
- (version "3.98-1.20")
+ (version "3.99-0.3")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
- "0n28m8iz1wfgixr7fjswl238c5w9kggsrw0c8hdzp859dqvqdbs6"))))
+ "0lzpqwajs5xaqdna50vl24qkp9xvh00zypjjzy6kgdzk11isgdw1"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
(define-public r-dt
(package
(name "r-dt")
- (version "0.10")
+ (version "0.11")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "0vwhn1mcwv0hkbxnppf6vip23iiib0szvp1h3prawlkvd74xziiw"))))
+ "09k9s07aah1apc308sj1abvr27mky6fkpl9j6lxl2x55n4immvkg"))))
(properties
`((upstream-name . "DT")))
(build-system r-build-system)
(define-public r-pkgmaker
(package
(name "r-pkgmaker")
- (version "0.27")
+ (version "0.31")
(source
(origin
(method url-fetch)
(uri (cran-uri "pkgmaker" version))
(sha256
(base32
- "0spcamjncj78kzjps2rw4v1a4494yazv6xvhn0vmdflnypc8k8hp"))))
+ "0cc6v6kpwxwwh7k7zyw13wqdp0f9qzzr1a7vv02lskgii54aa4nb"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-bibtex" ,r-bibtex)
+ `(("r-assertthat" ,r-assertthat)
+ ("r-bibtex" ,r-bibtex)
("r-codetools" ,r-codetools)
("r-digest" ,r-digest)
("r-magrittr" ,r-magrittr)
(define-public r-rngtools
(package
(name "r-rngtools")
- (version "1.4")
+ (version "1.5")
(source
(origin
(method url-fetch)
(uri (cran-uri "rngtools" version))
(sha256
(base32
- "1kivj594bn774lbn29ws2rmzy2km99sza0j3jqvhal6hwmk27a9s"))))
+ "0xgmg3qb6insc157as47mcm9sdjdpy9jirh7w06bxb7pfcxqfx42"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-digest" ,r-digest)
- ("r-pkgmaker" ,r-pkgmaker)
- ("r-stringr" ,r-stringr)))
+ `(("r-digest" ,r-digest)))
(home-page "https://renozao.github.io/rngtools")
(synopsis "Utility functions for working with random number generators")
(description
(define-public r-bigmemory
(package
(name "r-bigmemory")
- (version "4.5.33")
+ (version "4.5.36")
(source
(origin
(method url-fetch)
(uri (cran-uri "bigmemory" version))
(sha256
(base32
- "0ycl9dzm3drpyas625h34rir5bnbjlncxlvawfsfmqwcbmwdjdvj"))))
+ "03pg8mxdc7q0249visjmc8bc3xmwxsfg3i2n6higicj4cfz7zihq"))))
(build-system r-build-system)
(propagated-inputs
`(("r-bh" ,r-bh)
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
- (version "1.0-11")
+ (version "1.0-12")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
- "0lkjph661blc1nwfzg9w48a60wvj6ffh4zjwlisvracsx4nn2883"))))
+ "03rfmii9j8x8fjv7hp8qd28z0svl4w0x54k2f4jpwv4qa7079i24"))))
(build-system r-build-system)
- (inputs
+ (native-inputs
`(("gfortran" ,gfortran)))
(home-page "http://mvtnorm.R-forge.R-project.org")
(synopsis "Package for multivariate normal and t-distributions")
(define-public r-tidyr
(package
(name "r-tidyr")
- (version "1.0.0")
+ (version "1.0.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyr" version))
(sha256
(base32
- "1403j0xd93l0r7qj738ryd5zc79hbcghrzybib3c3hrnaq5s78cj"))))
+ "0safj8bcf8libwr0jx4059bmarngvhfddrcv8k5iw39m9lpxs0r4"))))
(build-system r-build-system)
(propagated-inputs
`(("r-dplyr" ,r-dplyr)
(define-public r-gplots
(package
(name "r-gplots")
- (version "3.0.1.1")
+ (version "3.0.1.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "gplots" version))
(sha256
(base32
- "033plcfs9w8pmn84n24mdhiixdirc2a7pz6dvm61fpd20gwh7cbx"))))
+ "0vrm7wqrmqsmfrc070r9chpzb0vv60pay2lyar9qxfry6bsrvx86"))))
(build-system r-build-system)
(propagated-inputs
`(("r-catools" ,r-catools)
(define-public r-zoo
(package
(name "r-zoo")
- (version "1.8-6")
+ (version "1.8-7")
(source (origin
(method url-fetch)
(uri (cran-uri "zoo" version))
(sha256
(base32
- "1k1pmzr9nfwbxq1xf0jzn3nawv4sgnkxkgzxnm1i887jcbrs85r2"))))
+ "1w4542zs53bm261g95086a60576v334g1jrhnbgdqni4izf2s1wy"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-statmod
(package
(name "r-statmod")
- (version "1.4.32")
+ (version "1.4.33")
(source (origin
(method url-fetch)
(uri (cran-uri "statmod" version))
(sha256
(base32
- "083yyp84xj85zg4bhz7i90bqzl3p6155ch4abwsfc9k1lv7s2rrg"))))
+ "1fbi5m4c0lingm2vvi0g6jf8f2mg1h01xwyz5rnymrq7gs0ibiks"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/statmod")
(native-inputs
(define-public r-prabclus
(package
(name "r-prabclus")
- (version "2.3-1")
+ (version "2.3-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "prabclus" version))
(sha256
(base32
- "1h5k13w8mmmdy74l145zh64f339wy78z1nlg8xr3zg23gmv98cpg"))))
+ "0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
(define-public r-rrcov
(package
(name "r-rrcov")
- (version "1.4-9")
+ (version "1.5-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "rrcov" version))
(sha256
(base32
- "11zvxidlb1pr2j5dzvmbjqdgsmmicsq8ppjf5wcfykfyf2fkcmz7"))))
+ "0m62k58nabw7hjz1qyyf9a0d6lvcz5vcvpksjnq93zcfra9inr57"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-cluster" ,r-cluster)
- ("r-lattice" ,r-lattice)
+ `(("r-lattice" ,r-lattice)
("r-mvtnorm" ,r-mvtnorm)
("r-pcapp" ,r-pcapp)
("r-robustbase" ,r-robustbase)))
(define-public r-robust
(package
(name "r-robust")
- (version "0.4-18.1")
+ (version "0.4-18.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "robust" version))
(sha256
(base32
- "0xs098pfw5zdcdk3rsxkylfl6d2pyp566s5v92bzhgl7h8c90cfy"))))
+ "02x7d6dgx3skiadvx5m3c44b4bhz37ycpfhc25dhhv50y1db6l3k"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fit-models" ,r-fit-models)
(define-public r-fpc
(package
(name "r-fpc")
- (version "2.2-3")
+ (version "2.2-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "fpc" version))
(sha256
(base32
- "1dy3pla4jjgs46izqg2kxajlxr80sbr9896jbzb1qszrdx7af041"))))
+ "1gsnl5sbdg86b2wdrsy6wq83xj6mrziiq7rxa8cqksgljc7gp6yf"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
(define-public r-modelmetrics
(package
(name "r-modelmetrics")
- (version "1.2.2")
+ (version "1.2.2.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ModelMetrics" version))
(sha256
(base32
- "158ddbw2snlyzd2q6mdaif5i67kq4qfvadylwjxgv1w2cmszrmk6"))))
+ "17yw46yr0n9hddvlhh73jdpmpdlpa581n5xjpwkr6cpr2f7xxpqc"))))
(properties `((upstream-name . "ModelMetrics")))
(build-system r-build-system)
(propagated-inputs
(define-public r-car
(package
(name "r-car")
- (version "3.0-5")
+ (version "3.0-6")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
- (base32 "0w7fm81pn0wqrwzbjyddnrkpjl8gavg7ijh7rab9f21rkgkzgm3y"))))
+ (base32 "0yv5mwaa0ymrbis9590mx0zcj3w6j4drhs6ab13zhx4zc3x1b7b6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
to Applied regression, Second Edition, Sage, 2011.")
(license license:gpl2+)))
-(define-public r-caret
- (package
- (name "r-caret")
- (version "6.0-84")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "caret" version))
- (sha256
- (base32
- "03898irgb70q0p01kq99yb6q6xji0jx4jmj0yxlv8wcwd841r0x1"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-foreach" ,r-foreach)
- ("r-ggplot2" ,r-ggplot2)
- ("r-lattice" ,r-lattice)
- ("r-modelmetrics" ,r-modelmetrics)
- ("r-nlme" ,r-nlme)
- ("r-plyr" ,r-plyr)
- ("r-recipes" ,r-recipes)
- ("r-reshape2" ,r-reshape2)
- ("r-withr" ,r-withr)))
- (home-page "https://github.com/topepo/caret")
- (synopsis "Classification and regression training")
- (description
- "This package provides misc functions for training and plotting
-classification and regression models.")
- (license license:gpl2+)))
-
(define-public r-rcppprogress
(package
(name "r-rcppprogress")
(define-public r-ranger
(package
(name "r-ranger")
- (version "0.11.2")
+ (version "0.12.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "ranger" version))
(sha256
(base32
- "1sxyzxmjc6lm8wcmq15j6sscnza7aay4mr3dyri2zngx6fa8mb0k"))))
+ "1vr5akgh388iivrxi0g4pl2npq9dc4cim3ljk4kjf637q058wc7w"))))
(build-system r-build-system)
(propagated-inputs
`(("r-rcpp" ,r-rcpp)