;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org>
+;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages maths)
+ #:use-module (ice-9 regex)
#:use-module (gnu packages)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix svn-download)
#:use-module (guix utils)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu)
(define-public pspp
(package
(name "pspp")
- (version "0.8.3")
+ (version "0.8.4")
(source
(origin
(method url-fetch)
version ".tar.gz"))
(sha256
(base32
- "0vri2pzvmm38qaihfvwlry30f40lcnps4blg59ixic4q20ldxf5d"))))
+ "0b65q45x05ps95pph6glbg7ymdr638nfb0rk9x5x9qm5k073pk5z"))))
(build-system gnu-build-system)
(inputs
`(("cairo" ,cairo)
be output in text, PostScript, PDF or HTML.")
(license license:gpl3+)))
+(define-public arpack-ng
+ (package
+ (name "arpack-ng")
+ (version "3.2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/opencollab/arpack-ng/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1fwch6vipms1ispzg2djvbzv5wag36f1dmmr3xs3mbp6imfyhvff"))))
+ (build-system gnu-build-system)
+ (home-page "https://github.com/opencollab/arpack-ng")
+ (inputs
+ `(("lapack" ,lapack)
+ ("fortran" ,gfortran-4.8)))
+ (synopsis "Fortran subroutines for solving eigenvalue problems")
+ (description
+ "ARPACK-NG is a collection of Fortran77 subroutines designed to solve
+large scale eigenvalue problems.")
+ (license (license:bsd-style "file://COPYING"
+ "See COPYING in the distribution."))))
+
(define-public lapack
(package
(name "lapack")
(home-page "http://www.gnuplot.info")
(synopsis "Command-line driven graphing utility")
(description "Gnuplot is a portable command-line driven graphing
-utility. It was originally created to allow scientists and students to
+utility. It was originally created to allow scientists and students to
visualize mathematical functions and data interactively, but has grown to
-support many non-interactive uses such as web scripting. It is also used as a
+support many non-interactive uses such as web scripting. It is also used as a
plotting engine by third-party applications like Octave.")
;; X11 Style with the additional restriction that derived works may only be
;; distributed as patches to the original.
(define-public octave
(package
(name "octave")
- (version "3.8.0")
+ (version "3.8.2")
(source
(origin
(method url-fetch)
version ".tar.gz"))
(sha256
(base32
- "0ks9pr154syw0vb3jn6xsnrkkrbvf9y7i7gaxa28rz6ngxbxvq9l"))))
+ "05slz8yx8k91fqlnfr1f0vni95iq9qmchz41c7nf4isn3b2fjn7j"))))
(build-system gnu-build-system)
(inputs
`(("lapack" ,lapack)
("hdf5-include" ,hdf5 "include")
("lapack" ,lapack)
("mesa" ,mesa)
+ ("glu" ,glu)
("libx11" ,libx11)
("libxext" ,libxext)))
(arguments
;; At least one file (src/maxima.asd) says "version 2."
;; GPLv2 only is therefore the smallest subset.
(license license:gpl2)))
+
+(define-public muparser
+ (package
+ (name "muparser")
+ (version "2.2.5")
+ (source
+ (origin
+ (method svn-fetch)
+ (uri (svn-reference
+ (url "http://muparser.googlecode.com/svn/trunk/")
+ (revision 34)))
+ (sha256
+ (base32
+ "1d6bdbhx9zj3srwj3m7c9hvr18gnx1fx43h6d25my7q85gicpcwn"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags '("--enable-samples=no")
+ #:tests? #f)) ;no "check" target
+ (home-page "http://muparser.beltoforion.de/")
+ (synopsis "Fast parser library for mathematical expressions")
+ (description
+ "muParser is an extensible high performance math parser library. It is
+based on transforming an expression into a bytecode and precalculating
+constant parts of it.")
+ (license license:expat)))
+
+(define-public openlibm
+ (package
+ (name "openlibm")
+ (version "0.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/JuliaLang/openlibm/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0cwqqqlblj3kzp9aq1wnpfs1fl0qd1wp1xzm5shb09w06i4rh9nn"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:make-flags
+ (list (string-append "prefix=" (assoc-ref %outputs "out")))
+ #:phases
+ ;; no configure script
+ (alist-delete 'configure %standard-phases)
+ #:tests? #f)) ;the tests are part of the default target
+ (home-page "http://openlibm.org/")
+ (synopsis "Portable C mathematical library (libm)")
+ (description
+ "OpenLibm is an effort to have a high quality, portable, standalone C
+mathematical library (libm). It can be used standalone in applications and
+programming language implementations. The project was born out of a need to
+have a good libm for the Julia programming langage that worked consistently
+across compilers and operating systems, and in 32-bit and 64-bit
+environments.")
+ ;; See LICENSE.md for details.
+ (license (list license:expat
+ license:isc
+ license:bsd-2
+ license:public-domain
+ license:lgpl2.1+))))
+
+(define-public openspecfun
+ (package
+ (name "openspecfun")
+ (version "0.4")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/JuliaLang/openspecfun/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0nsa3jjmlhcqkw5ba5ypbn3n0c8b6lc22zzlxnmxkxi9shhdx65z"))))
+ (build-system gnu-build-system)
+ (arguments
+ '(#:tests? #f ;no "check" target
+ #:make-flags
+ (list (string-append "prefix=" (assoc-ref %outputs "out")))
+ ;; no configure script
+ #:phases (alist-delete 'configure %standard-phases)))
+ (inputs
+ `(("fortran" ,gfortran-4.8)))
+ (home-page "https://github.com/JuliaLang/openspecfun")
+ (synopsis "Collection of special mathematical functions")
+ (description
+ "Openspecfun provides AMOS and Faddeeva. AMOS (from Netlib) is a
+portable package for Bessel Functions of a Complex Argument and Nonnegative
+Order; it contains subroutines for computing Bessel functions and Airy
+functions. Faddeeva allows computing the various error functions of arbitrary
+complex arguments (Faddeeva function, error function, complementary error
+function, scaled complementary error function, imaginary error function, and
+Dawson function); given these, one can also easily compute Voigt functions,
+Fresnel integrals, and similar related functions as well.")
+ ;; Faddeeva is released under the Expat license; AMOS is included as
+ ;; public domain software.
+ (license (list license:expat license:public-domain))))
+
+(define-public atlas
+ (package
+ (name "atlas")
+ (version "3.10.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/math-atlas/atlas"
+ version ".tar.bz2"))
+ (sha256
+ (base32
+ "0bqh4bdnjdyww4mcpg6kn0x7338mfqbdgysn97dzrwwb26di7ars"))))
+ (build-system gnu-build-system)
+ (home-page "http://math-atlas.sourceforge.net/")
+ (inputs `(("gfortran" ,gfortran-4.8)
+ ("lapack-tar" ,(package-source lapack))))
+ (outputs '("out" "doc"))
+ ;; For the moment we drop support for MIPS at it fails to compile. See
+ ;; https://lists.gnu.org/archive/html/guix-devel/2014-11/msg00516.html
+ (supported-systems (delete "mips64el-linux" %supported-systems))
+ (arguments
+ `(#:parallel-build? #f
+ #:parallel-tests? #f
+
+ ;; ATLAS tunes itself for the machine it is built on, as explained at
+ ;; <http://lists.gnu.org/archive/html/guix-devel/2014-10/msg00305.html>.
+ ;; For this reason, we want users to build it locally instead of using
+ ;; substitutes.
+ #:substitutable? #f
+
+ #:modules ((srfi srfi-26)
+ (srfi srfi-1)
+ (guix build gnu-build-system)
+ (guix build utils))
+ #:configure-flags
+ `(;; Generate position independent code suitable for dynamic libraries
+ ;; and use WALL timer to get more accurate timing.
+ "-Fa" "alg" "-fPIC" "-D" "c" "-DWALL"
+ ;; Set word width.
+ "-b"
+ ,,(if (string-match "64" (%current-system))
+ "64"
+ "32")
+ ;; Disable parallel build as it gives errors: atlas_pthread.h is
+ ;; needed to compile C files before it is generated.
+ "-Ss" "pmake" "make -j 1"
+ ;; Probe is failing for MIPS. We therefore define the system
+ ;; architecture explicitly by setting (-A) MACHINETYPE = 49
+ ;; 'MIPSR1xK' and (-V) ISA = 1 'none'.
+ ,,@(if (string-prefix? "mips" (%current-system))
+ (list "-A" "49" "-V" "1")
+ (list))
+ ;; Generate shared libraries.
+ "--shared"
+ ;; Build a full LAPACK library.
+ ,(string-append "--with-netlib-lapack-tarfile="
+ (assoc-ref %build-inputs "lapack-tar")))
+ #:phases
+ (alist-cons-after
+ 'install 'install-doc
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ (let ((doc (string-append (assoc-ref outputs "doc")
+ "/share/doc/atlas")))
+ (mkdir-p doc)
+ (fold (lambda (file previous)
+ (and previous (zero? (system* "cp" file doc))))
+ #t (find-files "../ATLAS/doc" ".*"))))
+ (alist-cons-after
+ 'check 'check-pt
+ (lambda _ (zero? (system* "make" "ptcheck")))
+ ;; Fix files required to run configure.
+ (alist-cons-before
+ 'configure 'fix-/bin/sh
+ (lambda _
+ ;; Use `sh', not `/bin/sh'.
+ (substitute* (find-files "." "Makefile|configure|SpewMakeInc\\.c")
+ (("/bin/sh")
+ "sh")))
+ ;; Fix /bin/sh in generated make files.
+ (alist-cons-after
+ 'configure 'fix-/bin/sh-in-generated-files
+ (lambda _
+ (substitute* (find-files "." "^[Mm]ake\\.inc.*")
+ (("/bin/sh")
+ "sh")))
+ ;; ATLAS configure program does not accepts the default flags
+ ;; passed by the 'gnu-build-system'.
+ (alist-replace
+ 'configure
+ (lambda* (#:key native-inputs inputs outputs
+ (configure-flags '())
+ #:allow-other-keys #:rest args)
+ (let* ((prefix (assoc-ref outputs "out"))
+ (bash (or (and=> (assoc-ref
+ (or native-inputs inputs) "bash")
+ (cut string-append <> "/bin/bash"))
+ "/bin/sh"))
+ (flags `(,(string-append "--prefix=" prefix)
+ ,@configure-flags))
+ (abs-srcdir (getcwd))
+ (srcdir (string-append "../" (basename abs-srcdir))))
+ (format #t "source directory: ~s (relative from build: ~s)~%"
+ abs-srcdir srcdir)
+ (mkdir "../build")
+ (chdir "../build")
+ (format #t "build directory: ~s~%" (getcwd))
+ (format #t "configure flags: ~s~%" flags)
+ (zero? (apply system* bash
+ (string-append srcdir "/configure")
+ flags))))
+ %standard-phases)))))))
+ (synopsis "Automatically Tuned Linear Algebra Software")
+ (description
+ "ATLAS is an automatically tuned linear algebra software library
+providing C and Fortran77 interfaces to a portably efficient BLAS
+implementation, as well as a few routines from LAPACK.
+
+Optimization occurs at build time. For this reason, the library is built on
+the machine where it is installed, without resorting to pre-built substitutes.
+
+Before building the library, CPU throttling should be disabled. This can be
+done in the BIOS, or, on GNU/Linux, with the following commands:
+
+cpufreq-selector -g performance -c 0
+...
+cpufreq-selector -g performance -c N-1
+
+where N is the number of cores of your CPU. Failure to do so will result in a
+library with poor performance.")
+ (license license:bsd-3)))
HCoop / jackhill / guix / guix.git / blobdiff