"This package exposes an annotation database generated from Ensembl.")
(license license:artistic2.0)))
+(define-public r-txdb-dmelanogaster-ucsc-dm6-ensgene
+ (package
+ (name "r-txdb-dmelanogaster-ucsc-dm6-ensgene")
+ (version "3.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TxDb.Dmelanogaster.UCSC.dm6.ensGene"
+ version 'annotation))
+ (sha256
+ (base32
+ "0yij7zyqkmmr13389rs2gfa5anvvw648nnl1kjbsgvyxkggif8q4"))))
+ (properties
+ `((upstream-name . "TxDb.Dmelanogaster.UCSC.dm6.ensGene")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-genomicfeatures" ,r-genomicfeatures)))
+ (home-page
+ "https://bioconductor.org/packages/TxDb.Dmelanogaster.UCSC.dm6.ensGene")
+ (synopsis "Annotation package for TxDb object(s)")
+ (description
+ "This package exposes an annotation databases generated from UCSC by
+exposing these as TxDb objects.")
+ (license license:artistic2.0)))
+
(define-public r-txdb-hsapiens-ucsc-hg19-knowngene
(package
(name "r-txdb-hsapiens-ucsc-hg19-knowngene")
(properties `((upstream-name . "gageData")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/gageData")
- (synopsis "Auxillary data for gage package")
+ (synopsis "Auxiliary data for the gage package")
(description
"This is a supportive data package for the software package @code{gage}.
However, the data supplied here are also useful for gene set or pathway
(description
"@code{r-circrnaprofiler} is a computational framework for a comprehensive
in silico analysis of @dfn{circular RNA} (circRNAs). This computational
-framework allows to combine and analyze circRNAs previously detected by
+framework allows combining and analyzing circRNAs previously detected by
multiple publicly available annotation-based circRNA detection tools. It
covers different aspects of circRNAs analysis from differential expression
analysis, evolutionary conservation, biogenesis to functional analysis.")
"https://bioconductor.org/packages/msmsTests")
(synopsis "Differential LC-MS/MS expression tests")
(description
- "This packages provides statistical tests for label-free LC-MS/MS data
+ "This package provides statistical tests for label-free LC-MS/MS data
by spectral counts, to discover differentially expressed proteins between two
biological conditions. Three tests are available: Poisson GLM regression,
quasi-likelihood GLM regression, and the negative binomial of the edgeR
-package.The three models admit blocking factors to control for nuissance
-variables.To assure a good level of reproducibility a post-test filter is
+package. The three models admit blocking factors to control for nuisance
+variables. To assure a good level of reproducibility a post-test filter is
available, where we may set the minimum effect size considered biologicaly
relevant, and the minimum expression of the most abundant condition.")
(license license:gpl2)))
(define-public r-gviz
(package
(name "r-gviz")
- (version "1.34.0")
+ (version "1.34.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Gviz" version))
(sha256
(base32
- "0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2"))))
+ "0bmlfz9ri1gkwyl605a2hqi5b8jdpvynrxwghwmrsd657ip6c7n1"))))
(properties `((upstream-name . "Gviz")))
(build-system r-build-system)
(propagated-inputs
(description
"This package implements functions for combinatorial and differential
analysis of ChIP-seq data. It includes uni- and multivariate peak-calling,
-export to genome browser viewable files, and functi ons for enrichment
+export to genome browser viewable files, and functions for enrichment
analyses.")
(license license:artistic2.0)))