gnu: gemma: Update to 0.98.3.

[jackhill/guix/guix.git] / gnu / packages / algebra.scm

diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index ed35a68..030339c 100644 (file)
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2013, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2016, 2017, 2018, 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2013, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017, 2020 Efraim Flashner <efraim@flashner.co.il>
@@ -276,7 +276,7 @@ PARI is also available as a C library to allow for faster computations.")
 (define-public gp2c
   (package
    (name "gp2c")
-   (version "0.0.11pl4")
+   (version "0.0.12")
    (source (origin
             (method url-fetch)
             (uri (string-append
@@ -284,7 +284,7 @@ PARI is also available as a C library to allow for faster computations.")
                   version ".tar.gz"))
             (sha256
               (base32
-                "1cnnh7diqc97q76q5pyhpbljbhc0sz8mlrbqgiwi0sjkgh8iqsj0"))))
+                "039ip7qkwwv46wrcdrz7y12m30kazzkjr44kqbc0h137g4wzd7zf"))))
    (build-system gnu-build-system)
    (native-inputs `(("perl" ,perl)))
    (inputs `(("pari-gp" ,pari-gp)))
@@ -327,9 +327,9 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.")
    (version "1.0")
    (source (origin
             (method url-fetch)
-            (uri (string-append
-                  "https://gforge.inria.fr/frs/download.php/33497/cmh-"
-                  version ".tar.gz"))
+            ;; Git repo at <https://gitlab.inria.fr/cmh/cmh>.
+            (uri (string-append "http://www.multiprecision.org/downloads/cmh-"
+                                version ".tar.gz"))
             (sha256
              (base32
               "1a28xr9bs0igms0ik99x0w8lnb0jyfcmvyi26pbyh9ggcdivd33p"))))
@@ -349,13 +349,12 @@ varieties, i.e. Jacobians of hyperelliptic curves.
 It can also be used to compute theta constants at arbitrary
 precision.")
    (license license:gpl3+)
-   (home-page
-     "https://gitlab.inria.fr/cmh/cmh#cmh-computation-of-genus-2-class-polynomials")))
+   (home-page "http://www.multiprecision.org/cmh/home.html")))
 
 (define-public giac
   (package
     (name "giac")
-    (version "1.6.0-31")
+    (version "1.6.0-41")
     (source
      (origin
        (method url-fetch)
@@ -367,7 +366,7 @@ precision.")
                            "~parisse/debian/dists/stable/main/source/"
                            "giac_" version ".tar.gz"))
        (sha256
-        (base32 "1dr1y88sx2gzldn0zl6p8b1ngjjcmh89iv4kzyhi2cf74j3yw85m"))))
+        (base32 "1z5b3jm6ffxk3yvdqzwn9icbna68brkrz5kspgacq823d03jfklc"))))
     (build-system gnu-build-system)
     (arguments
      `(#:modules ((ice-9 ftw)
@@ -410,7 +409,7 @@ precision.")
     (inputs
      ;; TODO: Add libnauty, unbundle "libmicropython.a".
      `(("fltk" ,fltk)
-       ("glpk" ,glpk)
+       ("glpk" ,glpk-4)
        ("gmp" ,gmp)
        ("gsl" ,gsl)
        ("lapack" ,lapack)
@@ -533,14 +532,14 @@ fast arithmetic.")
                        (string-append "--with-flint=" flint)
                        (string-append "--with-gmp=" gmp)
                        (string-append "--with-mpfr=" mpfr))))))))
+    (home-page "https://arblib.org")
     (synopsis "Arbitrary precision floating-point ball arithmetic")
     (description
      "Arb is a C library for arbitrary-precision floating-point ball
 arithmetic.  It supports efficient high-precision computation with
 polynomials, power series, matrices and special functions over the
 real and complex numbers, with automatic, rigorous error control.")
-    (license license:lgpl2.1+)
-    (home-page "http://arblib.org")))
+    (license license:lgpl2.1+)))
 
 (define-public python-flint
   (package
@@ -674,9 +673,11 @@ geometry and singularity theory.")
    (version "7.0.4")
    (source (origin
              (method url-fetch)
-             ;; Use the ‘Latest version’ link for a stable URI across releases.
-             (uri (string-append "https://gforge.inria.fr/frs/download.php/"
-                                 "latestfile/160/ecm-" version ".tar.gz"))
+             (uri
+               (let ((hash "00c4c691a1ef8605b65bdf794a71539d"))
+                    (string-append "https://gitlab.inria.fr/zimmerma/ecm/"
+                                   "uploads/" hash "/ecm-" version
+                                   ".tar.gz")))
              (sha256 (base32
                       "0hxs24c2m3mh0nq1zz63z3sb7dhy1rilg2s1igwwcb26x3pb7xqc"))))
    (build-system gnu-build-system)
@@ -1005,7 +1006,7 @@ Optional thin wrappers allow usage of the library from other languages.")
 (define-public eigen
   (package
     (name "eigen")
-    (version "3.3.7")
+    (version "3.3.8")
     (source (origin
               (method url-fetch)
               (uri (list
@@ -1015,9 +1016,10 @@ Optional thin wrappers allow usage of the library from other languages.")
                                     version ".orig.tar.bz2")))
               (sha256
                (base32
-                "1km3fyfzyqfdvmnl79drps3fjwnz3zbh0c7l34mfbqyvvs8cy4wz"))
+                "1vxrsncfnkyq6gwxpsannpryp12mk7lc8f42ybvz3saf7icwc582"))
               (file-name (string-append name "-" version ".tar.bz2"))
-              (patches (search-patches "eigen-stabilise-sparseqr-test.patch"))
+              (patches (search-patches "eigen-remove-openmp-error-counting.patch"
+                                       "eigen-stabilise-sparseqr-test.patch"))
               (modules '((guix build utils)))
               (snippet
                ;; There are 3 test failures in the "unsupported" directory,