+
+(define-public r-rappdirs
+ (package
+ (name "r-rappdirs")
+ (version "0.3.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "rappdirs" version))
+ (sha256
+ (base32
+ "0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/rappdirs/")
+ (synopsis "Determine where to save data, caches, and logs")
+ (description
+ "This package provides an easy way to determine which directories on the
+user's computer should be used to save data, caches and logs. It is a port of
+Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.")
+ (license license:expat)))
+
+(define-public r-learnr
+ (package
+ (name "r-learnr")
+ (version "0.9.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "learnr" version))
+ (sha256
+ (base32
+ "1z04c1djg7ghsl7p9ypc6k5m7snahnmjy10xmrzqfayx1wkfkn9n"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-evaluate" ,r-evaluate)
+ ("r-htmltools" ,r-htmltools)
+ ("r-htmlwidgets" ,r-htmlwidgets)
+ ("r-jsonlite" ,r-jsonlite)
+ ("r-knitr" ,r-knitr)
+ ("r-markdown" ,r-markdown)
+ ("r-rappdirs" ,r-rappdirs)
+ ("r-rmarkdown" ,r-rmarkdown)
+ ("r-rprojroot" ,r-rprojroot)
+ ("r-shiny" ,r-shiny)
+ ("r-withr" ,r-withr)))
+ (home-page "https://rstudio.github.io/learnr/")
+ (synopsis "Interactive tutorials for R")
+ (description
+ "This package provides tools to create interactive tutorials using R
+Markdown. Use a combination of narrative, figures, videos, exercises, and
+quizzes to create self-paced tutorials for learning about R and R packages.")
+ (license license:asl2.0)))
+
+(define-public r-analytics
+ (package
+ (name "r-analytics")
+ (version "2.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "analytics" version))
+ (sha256
+ (base32
+ "1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-car" ,r-car)
+ ("r-cluster" ,r-cluster)
+ ("r-fractal" ,r-fractal)
+ ("r-lmtest" ,r-lmtest)
+ ("r-mass" ,r-mass)
+ ("r-np" ,r-np)
+ ("r-powerplus" ,r-powerplus)
+ ("r-robust" ,r-robust)
+ ("r-trend" ,r-trend)
+ ("r-tsa" ,r-tsa)
+ ("r-urca" ,r-urca)))
+ (home-page "https://cran.r-project.org/web/packages/analytics/")
+ (synopsis "Collection of data analysis tools")
+ (description
+ "This package is a collection of data analysis tools. It includes tools
+for regression outlier detection in a fitted linear model, stationary
+bootstrap using a truncated geometric distribution, a comprehensive test for
+weak stationarity, column means by group, weighted biplots, and a heuristic to
+obtain a better initial configuration in non-metric MDS.")
+ (license license:gpl2)))
+
+(define-public r-reticulate
+ (package
+ (name "r-reticulate")
+ (version "1.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "reticulate" version))
+ (sha256
+ (base32
+ "0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr"))))
+ (build-system r-build-system)
+ (inputs `(("python" ,python)))
+ (propagated-inputs
+ `(("r-jsonlite" ,r-jsonlite)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/rstudio/reticulate")
+ (synopsis "R interface to Python")
+ (description
+ "This package provides an interface from R to Python modules, classes,
+and functions. When calling into Python, R data types are automatically
+converted to their equivalent Python types. When values are returned from
+Python to R they are converted back to R types.")
+ (license license:asl2.0)))
+
+(define-public r-bibtex
+ (package
+ (name "r-bibtex")
+ (version "0.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "bibtex" version))
+ (sha256
+ (base32
+ "0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-stringr" ,r-stringr)))
+ (home-page "https://github.com/romainfrancois/bibtex")
+ (synopsis "Bibtex parser")
+ (description "This package provides a utility for R to parse a bibtex
+file.")
+ (license license:gpl2+)))
+
+(define-public r-ggseqlogo
+ (package
+ (name "r-ggseqlogo")
+ (version "0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggseqlogo" version))
+ (sha256
+ (base32
+ "13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"))))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-ggplot2" ,r-ggplot2)))
+ (home-page "https://github.com/omarwagih/ggseqlogo")
+ (synopsis "ggplot2 extension for drawing genetic sequence logos")
+ (description
+ "The range of functions provided by this package makes it possible to
+draw highly versatile genomic sequence logos. Features include, but are not
+limited to, modifying colour schemes and fonts used to draw the logo,
+generating multiple logo plots, and aiding the visualisation with annotations.
+Sequence logos can easily be combined with other ggplot2 plots.")
+ ;; Unspecified version of the LGPL.
+ (license license:lgpl3+)))
+
+(define-public r-ggsci
+ (package
+ (name "r-ggsci")
+ (version "2.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggsci" version))
+ (sha256
+ (base32
+ "0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-scales" ,r-scales)))
+ (home-page "https://nanx.me/ggsci/")
+ (synopsis "Scientific journal and sci-fi themed color palettes for ggplot2")
+ (description
+ "This package provides a collection of ggplot2 color palettes inspired by
+plots in scientific journals, data visualization libraries, science fiction
+movies, and TV shows.")
+ (license license:gpl3)))
+
+(define-public r-ggsignif
+ (package
+ (name "r-ggsignif")
+ (version "0.4.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggsignif" version))
+ (sha256
+ (base32
+ "1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)))
+ (home-page "https://github.com/const-ae/ggsignif")
+ (synopsis "Significance brackets for ggplot2")
+ (description
+ "Enrich your ggplots with group-wise comparisons. This package provides
+an easy way to indicate if two groups are significantly different. Commonly
+this is shown by a bracket on top connecting the groups of interest which
+itself is annotated with the level of significance. The package provides a
+single layer that takes the groups for comparison and the test as arguments
+and adds the annotation to the plot.")
+ (license license:gpl3)))
+
+(define-public r-ggpubr
+ (package
+ (name "r-ggpubr")
+ (version "0.1.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ggpubr" version))
+ (sha256
+ (base32
+ "110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cowplot" ,r-cowplot)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggrepel" ,r-ggrepel)
+ ("r-ggsci" ,r-ggsci)
+ ("r-ggsignif" ,r-ggsignif)
+ ("r-gridextra" ,r-gridextra)
+ ("r-magrittr" ,r-magrittr)
+ ("r-purrr" ,r-purrr)
+ ("r-scales" ,r-scales)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "http://www.sthda.com/english/rpkgs/ggpubr")
+ (synopsis "ggplot2-based publication-ready plots")
+ (description
+ "The ggplot2 package is an excellent and flexible package for elegant
+data visualization in R. However the default generated plots require some
+formatting before we can send them for publication. The ggpubr package
+provides some easy-to-use functions for creating and customizing ggplot2-based
+publication-ready plots.")
+ (license license:gpl2)))
+
+(define-public r-ellipse
+ (package
+ (name "r-ellipse")
+ (version "0.4.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "ellipse" version))
+ (sha256
+ (base32
+ "0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"))))
+ (build-system r-build-system)
+ (home-page "https://cran.r-project.org/web/packages/ellipse/")
+ (synopsis "Functions for drawing ellipses and ellipse-like confidence regions")
+ (description
+ "This package contains various routines for drawing ellipses and
+ellipse-like confidence regions, implementing the plots described in Murdoch
+and Chow (1996), A graphical display of large correlation matrices, The
+American Statistician 50, 178-180. There are also routines implementing the
+profile plots described in Bates and Watts (1988), Nonlinear Regression
+Analysis and its Applications.")
+ (license license:gpl2+)))
+
+(define-public r-flashclust
+ (package
+ (name "r-flashclust")
+ (version "1.01-2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "flashClust" version))
+ (sha256
+ (base32
+ "0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"))))
+ (properties `((upstream-name . "flashClust")))
+ (build-system r-build-system)
+ (native-inputs `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/web/packages/flashClust/")
+ (synopsis "Implementation of optimal hierarchical clustering")
+ (description
+ "This package provides a fast implementation of hierarchical
+clustering.")
+ (license license:gpl2+)))
+
+(define-public r-factominer
+ (package
+ (name "r-factominer")
+ (version "1.41")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "FactoMineR" version))
+ (sha256
+ (base32
+ "1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"))))
+ (properties `((upstream-name . "FactoMineR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-car" ,r-car)
+ ("r-cluster" ,r-cluster)
+ ("r-ellipse" ,r-ellipse)
+ ("r-flashclust" ,r-flashclust)
+ ("r-lattice" ,r-lattice)
+ ("r-leaps" ,r-leaps)
+ ("r-mass" ,r-mass)
+ ("r-scatterplot3d" ,r-scatterplot3d)))
+ (home-page "http://factominer.free.fr")
+ (synopsis "Multivariate exploratory data analysis and data mining")
+ (description
+ "This package provides exploratory data analysis methods to summarize,
+visualize and describe datasets. The main principal component methods are
+available, those with the largest potential in terms of applications:
+principal component analysis (PCA) when variables are quantitative,
+correspondence analysis (CA) and multiple correspondence analysis (MCA) when
+variables are categorical, Multiple Factor Analysis when variables are
+structured in groups, etc. and hierarchical cluster analysis.")
+ (license license:gpl2+)))
+
+(define-public r-factoextra
+ (package
+ (name "r-factoextra")
+ (version "1.0.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "factoextra" version))
+ (sha256
+ (base32
+ "1l6m8k7qhdw8ndar8nhmym0lfyd1i2iszl1cicjax0vq23ss6xw1"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-cluster" ,r-cluster)
+ ("r-dendextend" ,r-dendextend)
+ ("r-factominer" ,r-factominer)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggpubr" ,r-ggpubr)
+ ("r-ggrepel" ,r-ggrepel)
+ ("r-reshape2" ,r-reshape2)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "http://www.sthda.com/english/rpkgs/factoextra")
+ (synopsis "Extract and visualize the results of multivariate data analyses")
+ (description
+ "This package provides some easy-to-use functions to extract and
+visualize the output of multivariate data analyses, including
+@code{PCA} (Principal Component Analysis), @code{CA} (Correspondence
+Analysis), @code{MCA} (Multiple Correspondence Analysis), @code{FAMD} (Factor
+Analysis of Mixed Data), @code{MFA} (Multiple Factor Analysis) and
+@code{HMFA} (Hierarchical Multiple Factor Analysis) functions from different R
+packages. It contains also functions for simplifying some clustering analysis
+steps and provides ggplot2-based elegant data visualization.")
+ (license license:gpl2)))
+
+(define-public r-nbclust
+ (package
+ (name "r-nbclust")
+ (version "3.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "NbClust" version))
+ (sha256
+ (base32
+ "1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"))))
+ (properties `((upstream-name . "NbClust")))
+ (build-system r-build-system)
+ (home-page "https://sites.google.com/site/malikacharrad/research/nbclust-package")
+ (synopsis "Determine the best number of clusters in a data set")
+ (description
+ "NbClust provides 30 indexes for determining the optimal number of
+clusters in a data set and offers the best clustering scheme from different
+results to the user.")
+ (license license:gpl2)))
+
+(define-public r-hdf5r
+ (package
+ (name "r-hdf5r")
+ (version "1.0.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "hdf5r" version))
+ (sha256
+ (base32
+ "1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva"))))
+ (build-system r-build-system)
+ (inputs
+ `(("hdf5" ,hdf5)
+ ("zlib" ,zlib)))
+ (propagated-inputs
+ `(("r-bit64" ,r-bit64)
+ ("r-r6" ,r-r6)))
+ (home-page "https://hhoeflin.github.io/hdf5r")
+ (synopsis "Interface to the HDF5 binary data format")
+ (description
+ "HDF5 is a data model, library and file format for storing and managing
+large amounts of data. This package provides a nearly feature complete,
+object oriented wrapper for the HDF5 API using R6 classes. Additionally,
+functionality is added so that HDF5 objects behave very similar to their
+corresponding R counterparts.")
+ (license license:asl2.0)))
+
+(define-public r-writexl
+ (package
+ (name "r-writexl")
+ (version "1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "writexl" version))
+ (sha256
+ (base32
+ "0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf"))))
+ (build-system r-build-system)
+ (inputs `(("zlib" ,zlib)))
+ (home-page "https://github.com/ropensci/writexl")
+ (synopsis "Export data frames to xlsx format")
+ (description
+ "This package provides a data frame to xlsx exporter based on
+libxlsxwriter.")
+ (license license:bsd-2)))