HCoop / jackhill / guix / guix.git / blame
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1 | ;;; GNU Guix --- Functional package management for GNU |
| 2 | ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> | |
| 183ce988 | 3 | ;;; Copyright © 2018 Roel Janssen <roel@gnu.org> |
| fa596599 RW |
4 | ;;; |
| 5 | ;;; This file is part of GNU Guix. | |
| 6 | ;;; | |
| 7 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
| 8 | ;;; under the terms of the GNU General Public License as published by | |
| 9 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
| 10 | ;;; your option) any later version. | |
| 11 | ;;; | |
| 12 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
| 13 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 14 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
| 15 | ;;; GNU General Public License for more details. | |
| 16 | ;;; | |
| 17 | ;;; You should have received a copy of the GNU General Public License | |
| 18 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
| 19 | ||
| 20 | (define-module (gnu packages bioconductor) | |
| 21 | #:use-module ((guix licenses) #:prefix license:) | |
| 22 | #:use-module (guix packages) | |
| 23 | #:use-module (guix download) | |
| 24 | #:use-module (guix build-system r) | |
| 183ce988 RJ |
25 | #:use-module (gnu packages) |
| 26 | #:use-module (gnu packages statistics) | |
| 27 | #:use-module (gnu packages bioinformatics)) | |
| fa596599 RW |
28 | |
| 29 | (define-public r-hpar | |
| 30 | (package | |
| 31 | (name "r-hpar") | |
| 32 | (version "1.20.0") | |
| 33 | (source | |
| 34 | (origin | |
| 35 | (method url-fetch) | |
| 36 | (uri (bioconductor-uri "hpar" version)) | |
| 37 | (sha256 | |
| 38 | (base32 | |
| 39 | "0s5v79mgxdx862v1jrdf5pdap81nz5vjx25ni8s3sl97ldckf6j8")))) | |
| 40 | (build-system r-build-system) | |
| 41 | (home-page "https://bioconductor.org/packages/hpar/") | |
| 42 | (synopsis "Human Protein Atlas in R") | |
| 43 | (description "This package provides a simple interface to and data from | |
| 44 | the Human Protein Atlas project.") | |
| 45 | (license license:artistic2.0))) | |
| 183ce988 RJ |
46 | |
| 47 | (define-public r-regioner | |
| 48 | (package | |
| 49 | (name "r-regioner") | |
| 50 | (version "1.10.0") | |
| 51 | (source | |
| 52 | (origin | |
| 53 | (method url-fetch) | |
| 54 | (uri (bioconductor-uri "regioneR" version)) | |
| 55 | (sha256 | |
| 56 | (base32 | |
| 57 | "1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp")))) | |
| 58 | (properties `((upstream-name . "regioneR"))) | |
| 59 | (build-system r-build-system) | |
| 60 | (propagated-inputs | |
| 61 | `(("r-memoise" ,r-memoise) | |
| 62 | ("r-genomicranges" ,r-genomicranges) | |
| 63 | ("r-bsgenome" ,r-bsgenome) | |
| 64 | ("r-rtracklayer" ,r-rtracklayer) | |
| 65 | ("r-genomeinfodb" ,r-genomeinfodb) | |
| 66 | ("r-iranges" ,r-iranges))) | |
| 67 | (home-page "https://bioconductor.org/packages/regioneR/") | |
| 68 | (synopsis "Association analysis of genomic regions") | |
| 69 | (description "This package offers a statistical framework based on | |
| 70 | customizable permutation tests to assess the association between genomic | |
| 71 | region sets and other genomic features.") | |
| 72 | (license license:artistic2.0))) |