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233e7676 | 1 | ;;; GNU Guix --- Functional package management for GNU |
4879d2ff | 2 | ;;; Copyright © 2012, 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr> |
8f4b1dfb | 3 | ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org> |
e2ca23c5 | 4 | ;;; Copyright © 2014 Mark H Weaver <mhw@netris.org> |
2ed139c4 | 5 | ;;; |
233e7676 | 6 | ;;; This file is part of GNU Guix. |
2ed139c4 | 7 | ;;; |
233e7676 | 8 | ;;; GNU Guix is free software; you can redistribute it and/or modify it |
2ed139c4 AE |
9 | ;;; under the terms of the GNU General Public License as published by |
10 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
11 | ;;; your option) any later version. | |
12 | ;;; | |
233e7676 | 13 | ;;; GNU Guix is distributed in the hope that it will be useful, but |
2ed139c4 AE |
14 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of |
15 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
16 | ;;; GNU General Public License for more details. | |
17 | ;;; | |
18 | ;;; You should have received a copy of the GNU General Public License | |
233e7676 | 19 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. |
2ed139c4 | 20 | |
1ffa7090 | 21 | (define-module (gnu packages algebra) |
59a43334 | 22 | #:use-module (gnu packages) |
14e6520e | 23 | #:use-module (gnu packages autotools) |
10b1f688 | 24 | #:use-module (gnu packages compression) |
aae03c48 AE |
25 | #:use-module (gnu packages doxygen) |
26 | #:use-module (gnu packages graphviz) | |
1ffa7090 | 27 | #:use-module (gnu packages multiprecision) |
aae03c48 | 28 | #:use-module (gnu packages maths) |
0fc54d4b | 29 | #:use-module (gnu packages mpi) |
1ffa7090 LC |
30 | #:use-module (gnu packages perl) |
31 | #:use-module (gnu packages readline) | |
32 | #:use-module (gnu packages flex) | |
aae03c48 | 33 | #:use-module (gnu packages python) |
9bd9486d | 34 | #:use-module (gnu packages texlive) |
fb8d1be8 | 35 | #:use-module (gnu packages xorg) |
9f51293c | 36 | #:use-module ((guix licenses) #:prefix license:) |
2ed139c4 AE |
37 | #:use-module (guix packages) |
38 | #:use-module (guix download) | |
7569c5cb | 39 | #:use-module (guix build-system gnu) |
8f4b1dfb | 40 | #:use-module (guix build-system cmake) |
7569c5cb | 41 | #:use-module (guix utils)) |
2ed139c4 AE |
42 | |
43 | ||
44 | (define-public mpfrcx | |
45 | (package | |
46 | (name "mpfrcx") | |
9c68798d | 47 | (version "0.4.2") |
2ed139c4 AE |
48 | (source (origin |
49 | (method url-fetch) | |
50 | (uri (string-append | |
51 | "http://www.multiprecision.org/mpfrcx/download/mpfrcx-" | |
52 | version ".tar.gz")) | |
53 | (sha256 | |
54 | (base32 | |
9c68798d | 55 | "0grw66b255r574lvll1bqccm5myj2m8ajzsjaygcyq9zjnnbnhhy")))) |
2ed139c4 | 56 | (build-system gnu-build-system) |
878c8f3f AE |
57 | (propagated-inputs |
58 | `(("gmp" ,gmp) | |
59 | ("mpfr" ,mpfr) | |
60 | ("mpc" ,mpc))) ; Header files are included by mpfrcx.h. | |
35b9e423 | 61 | (synopsis "Arithmetic of polynomials over arbitrary precision numbers") |
2ed139c4 | 62 | (description |
35b9e423 | 63 | "Mpfrcx is a library for the arithmetic of univariate polynomials over |
2ed139c4 | 64 | arbitrary precision real (mpfr) or complex (mpc) numbers, without control |
35b9e423 | 65 | on the rounding. For the time being, only the few functions needed to |
2ed139c4 | 66 | implement the floating point approach to complex multiplication are |
35b9e423 | 67 | implemented. On the other hand, these comprise asymptotically fast |
e881752c | 68 | multiplication routines such as Toom–Cook and the FFT.") |
9f51293c | 69 | (license license:lgpl2.1+) |
2ed139c4 AE |
70 | (home-page "http://mpfrcx.multiprecision.org/"))) |
71 | ||
10b1f688 AE |
72 | (define-public cm |
73 | (package | |
74 | (name "cm") | |
81b55bf7 | 75 | (version "0.3") |
10b1f688 AE |
76 | (source (origin |
77 | (method url-fetch) | |
78 | (uri (string-append | |
79 | "http://www.multiprecision.org/cm/download/cm-" | |
80 | version ".tar.gz")) | |
81 | (sha256 | |
82 | (base32 | |
81b55bf7 | 83 | "1nf5kr0nqmhbzrsrinky18z0ighjpsmb5cr8zyg8jf04bfbyrfmc")))) |
10b1f688 AE |
84 | (build-system gnu-build-system) |
85 | (propagated-inputs | |
86 | `(("mpfrcx" ,mpfrcx) | |
87 | ("zlib" ,zlib))) ; Header files included from cm_common.h. | |
88 | (inputs | |
89 | `(("pari-gp" ,pari-gp))) | |
90 | (synopsis "CM constructions for elliptic curves") | |
91 | (description | |
92 | "The CM software implements the construction of ring class fields of | |
93 | imaginary quadratic number fields and of elliptic curves with complex | |
94 | multiplication via floating point approximations. It consists of libraries | |
95 | that can be called from within a C program and of executable command | |
96 | line applications.") | |
81b55bf7 | 97 | (license license:gpl3+) |
10b1f688 AE |
98 | (home-page "http://cm.multiprecision.org/"))) |
99 | ||
2ed139c4 AE |
100 | (define-public fplll |
101 | (package | |
102 | (name "fplll") | |
5a15ed50 | 103 | (version "4.0.4") |
2ed139c4 AE |
104 | (source (origin |
105 | (method url-fetch) | |
106 | (uri (string-append | |
107 | "http://perso.ens-lyon.fr/damien.stehle/fplll/libfplll-" | |
108 | version ".tar.gz")) | |
109 | (sha256 (base32 | |
5a15ed50 | 110 | "1cbiby7ykis4z84swclpysrljmqhfcllpkcbll1m08rzskgb1a6b")))) |
2ed139c4 AE |
111 | (build-system gnu-build-system) |
112 | (inputs `(("gmp" ,gmp) | |
113 | ("mpfr" ,mpfr))) | |
35b9e423 | 114 | (synopsis "Library for LLL-reduction of euclidean lattices") |
2ed139c4 | 115 | (description |
35b9e423 | 116 | "fplll LLL-reduces euclidean lattices. Since version 3, it can also |
2ed139c4 | 117 | solve the shortest vector problem.") |
9f51293c | 118 | (license license:lgpl2.1+) |
2ed139c4 | 119 | (home-page "http://perso.ens-lyon.fr/damien.stehle/fplll/"))) |
4e6b699d | 120 | |
90a6d47c AE |
121 | (define-public pari-gp |
122 | (package | |
123 | (name "pari-gp") | |
000e36f2 | 124 | (version "2.7.5") |
90a6d47c AE |
125 | (source (origin |
126 | (method url-fetch) | |
127 | (uri (string-append | |
128 | "http://pari.math.u-bordeaux.fr/pub/pari/unix/pari-" | |
129 | version ".tar.gz")) | |
f78c66aa AE |
130 | (sha256 |
131 | (base32 | |
000e36f2 | 132 | "0c8l83a0gjq73r9hndsrzkypwxvnnm4pxkkzbg6jm95m80nzwh11")))) |
90a6d47c | 133 | (build-system gnu-build-system) |
9bd9486d | 134 | (native-inputs `(("texlive" ,texlive-minimal))) |
90a6d47c | 135 | (inputs `(("gmp" ,gmp) |
fb8d1be8 | 136 | ("libx11" ,libx11) |
90a6d47c AE |
137 | ("perl" ,perl) |
138 | ("readline" ,readline))) | |
139 | (arguments | |
9bd9486d | 140 | '(#:make-flags '("all") |
12abb19d | 141 | #:test-target "dobench" |
08595262 AE |
142 | #:phases (modify-phases %standard-phases |
143 | (replace 'configure | |
144 | (lambda* (#:key outputs #:allow-other-keys) | |
145 | (let ((out (assoc-ref outputs "out"))) | |
146 | (zero? | |
147 | (system* "./Configure" | |
148 | (string-append "--prefix=" out))))))))) | |
90a6d47c AE |
149 | (synopsis "PARI/GP, a computer algebra system for number theory") |
150 | (description | |
151 | "PARI/GP is a widely used computer algebra system designed for fast | |
152 | computations in number theory (factorisations, algebraic number theory, | |
153 | elliptic curves...), but it also contains a large number of other useful | |
154 | functions to compute with mathematical entities such as matrices, | |
155 | polynomials, power series, algebraic numbers, etc., and a lot of | |
156 | transcendental functions. | |
157 | PARI is also available as a C library to allow for faster computations.") | |
9f51293c | 158 | (license license:gpl2+) |
90a6d47c | 159 | (home-page "http://pari.math.u-bordeaux.fr/"))) |
ed9f9a77 | 160 | |
f854a8c1 AE |
161 | (define-public gp2c |
162 | (package | |
163 | (name "gp2c") | |
4879d2ff | 164 | (version "0.0.9pl5") |
f854a8c1 AE |
165 | (source (origin |
166 | (method url-fetch) | |
167 | (uri (string-append | |
168 | "http://pari.math.u-bordeaux.fr/pub/pari/GP2C/gp2c-" | |
169 | version ".tar.gz")) | |
324bdcd8 AE |
170 | (sha256 |
171 | (base32 | |
4879d2ff | 172 | "1q003mkagc5ib6lqb2xfay7j4ffkwv7xlnznp6wdrq2sbqq4vyak")))) |
f854a8c1 | 173 | (build-system gnu-build-system) |
c67ccedd | 174 | (native-inputs `(("perl" ,perl))) |
f854a8c1 AE |
175 | (inputs `(("pari-gp" ,pari-gp))) |
176 | (arguments | |
177 | '(#:configure-flags | |
178 | (list (string-append "--with-paricfg=" | |
179 | (assoc-ref %build-inputs "pari-gp") | |
180 | "/lib/pari/pari.cfg")))) | |
181 | (synopsis "PARI/GP, a computer algebra system for number theory") | |
182 | (description | |
183 | "PARI/GP is a widely used computer algebra system designed for fast | |
184 | computations in number theory (factorisations, algebraic number theory, | |
185 | elliptic curves...), but it also contains a large number of other useful | |
186 | functions to compute with mathematical entities such as matrices, | |
187 | polynomials, power series, algebraic numbers, etc., and a lot of | |
188 | transcendental functions. | |
189 | PARI is also available as a C library to allow for faster computations. | |
190 | ||
191 | GP2C, the GP to C compiler, translates GP scripts to PARI programs.") | |
9f51293c | 192 | (license license:gpl2) |
f854a8c1 AE |
193 | (home-page "http://pari.math.u-bordeaux.fr/"))) |
194 | ||
d7ab698a AE |
195 | (define-public flint |
196 | (package | |
197 | (name "flint") | |
6c591c8e | 198 | (version "2.5.2") |
d7ab698a AE |
199 | (source (origin |
200 | (method url-fetch) | |
201 | (uri (string-append | |
202 | "http://flintlib.org/flint-" | |
203 | version ".tar.gz")) | |
204 | (sha256 (base32 | |
6c591c8e AE |
205 | "11syazv1a8rrnac3wj3hnyhhflpqcmq02q8pqk2m6g2k6h0gxwfb")) |
206 | (patches (map search-patch '("flint-ldconfig.patch"))))) | |
d7ab698a | 207 | (build-system gnu-build-system) |
df15d17d | 208 | (propagated-inputs |
d7ab698a | 209 | `(("gmp" ,gmp) |
df15d17d | 210 | ("mpfr" ,mpfr))) ; header files from both are included by flint/arith.h |
d7ab698a | 211 | (arguments |
ad11974e AE |
212 | `(#:parallel-tests? #f ; seems to be necessary on arm |
213 | #:phases | |
91430de6 AE |
214 | (modify-phases %standard-phases |
215 | (replace 'configure | |
216 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
217 | (let ((out (assoc-ref outputs "out")) | |
218 | (gmp (assoc-ref inputs "gmp")) | |
219 | (mpfr (assoc-ref inputs "mpfr"))) | |
91430de6 AE |
220 | ;; do not pass "--enable-fast-install", which makes the |
221 | ;; homebrew configure process fail | |
222 | (zero? (system* | |
223 | "./configure" | |
224 | (string-append "--prefix=" out) | |
225 | (string-append "--with-gmp=" gmp) | |
226 | (string-append "--with-mpfr=" mpfr))))))))) | |
d7ab698a AE |
227 | (synopsis "Fast library for number theory") |
228 | (description | |
229 | "FLINT is a C library for number theory. It supports arithmetic | |
230 | with numbers, polynomials, power series and matrices over many base | |
231 | rings, including multiprecision integers and rationals, integers | |
232 | modulo n, p-adic numbers, finite fields (prime and non-prime order) | |
233 | and real and complex numbers (via the Arb extension library). | |
234 | ||
235 | Operations that can be performed include conversions, arithmetic, | |
236 | GCDs, factoring, solving linear systems, and evaluating special | |
237 | functions. In addition, FLINT provides various low-level routines for | |
238 | fast arithmetic.") | |
9f51293c | 239 | (license license:gpl2+) |
d7ab698a AE |
240 | (home-page "http://flintlib.org/"))) |
241 | ||
6b8e8285 AE |
242 | (define-public arb |
243 | (package | |
244 | (name "arb") | |
ffc8f345 | 245 | (version "2.8.1") |
6b8e8285 AE |
246 | (source (origin |
247 | (method url-fetch) | |
248 | (uri (string-append | |
249 | "https://github.com/fredrik-johansson/arb/archive/" | |
250 | version ".tar.gz")) | |
f586c877 | 251 | (file-name (string-append name "-" version ".tar.gz")) |
424ce93d AE |
252 | (sha256 |
253 | (base32 | |
ffc8f345 AE |
254 | "04hhcpshfkcq9fr4hixbhpps50yf9drk62xgkvlcaj5kb4nyrx7l")) |
255 | (patches (map search-patch '("arb-ldconfig.patch"))))) | |
6b8e8285 | 256 | (build-system gnu-build-system) |
480d19e6 AE |
257 | (propagated-inputs |
258 | `(("flint" ,flint))) ; flint.h is included by arf.h | |
6b8e8285 | 259 | (inputs |
480d19e6 | 260 | `(("gmp" ,gmp) |
6b8e8285 AE |
261 | ("mpfr" ,mpfr))) |
262 | (arguments | |
263 | `(#:phases | |
264 | (alist-replace | |
265 | 'configure | |
266 | (lambda* (#:key inputs outputs #:allow-other-keys) | |
267 | (let ((out (assoc-ref outputs "out")) | |
268 | (flint (assoc-ref inputs "flint")) | |
269 | (gmp (assoc-ref inputs "gmp")) | |
270 | (mpfr (assoc-ref inputs "mpfr"))) | |
271 | ;; do not pass "--enable-fast-install", which makes the | |
272 | ;; homebrew configure process fail | |
273 | (zero? (system* | |
274 | "./configure" | |
275 | (string-append "--prefix=" out) | |
276 | (string-append "--with-flint=" flint) | |
277 | (string-append "--with-gmp=" gmp) | |
278 | (string-append "--with-mpfr=" mpfr))))) | |
279 | %standard-phases))) | |
280 | (synopsis "Arbitrary precision floating-point ball arithmetic") | |
281 | (description | |
282 | "Arb is a C library for arbitrary-precision floating-point ball | |
283 | arithmetic. It supports efficient high-precision computation with | |
284 | polynomials, power series, matrices and special functions over the | |
285 | real and complex numbers, with automatic, rigorous error control.") | |
9f51293c | 286 | (license license:gpl2+) |
6b8e8285 AE |
287 | (home-page "http://fredrikj.net/arb/"))) |
288 | ||
14e6520e AE |
289 | (define-public ntl |
290 | (package | |
291 | (name "ntl") | |
292 | (version "9.7.0") | |
293 | (source (origin | |
294 | (method url-fetch) | |
295 | (uri (string-append "http://shoup.net/ntl/ntl-" | |
296 | version ".tar.gz")) | |
297 | (sha256 (base32 | |
298 | "115frp5flyvw9wghz4zph1b3llmr5nbxk1skgsggckr81fh3gmxq")))) | |
299 | (build-system gnu-build-system) | |
300 | (native-inputs | |
301 | `(("libtool" ,libtool) | |
302 | ("perl" ,perl))) ; for configuration | |
303 | ;; FIXME: Add optional input gf2x once available; then also add | |
304 | ;; configure flag "NTL_GF2X_LIB=on". | |
305 | (inputs | |
306 | `(("gmp" ,gmp))) | |
307 | (arguments | |
308 | `(#:phases | |
309 | (modify-phases %standard-phases | |
310 | (replace 'configure | |
311 | (lambda* (#:key outputs #:allow-other-keys) | |
312 | (chdir "src") | |
313 | (system* "./configure" | |
314 | (string-append "PREFIX=" (assoc-ref outputs "out")) | |
315 | ;; Do not build especially for the build machine. | |
316 | "NATIVE=off" | |
317 | ;; Also do not tune to the build machine. | |
318 | "WIZARD=off" | |
319 | "SHARED=on") | |
320 | #t))))) | |
321 | (synopsis "C++ library for number theory") | |
322 | (description | |
323 | "NTL is a C++ library providing data structures and algorithms | |
324 | for manipulating signed, arbitrary length integers, and for vectors, | |
325 | matrices, and polynomials over the integers and over finite fields.") | |
326 | (license license:gpl2+) | |
327 | (home-page "http://shoup.net/ntl/"))) | |
328 | ||
aae03c48 AE |
329 | (define-public singular |
330 | (package | |
331 | (name "singular") | |
332 | (version "4.0.3") | |
333 | (source (origin | |
334 | (method url-fetch) | |
335 | (uri (string-append "http://www.mathematik.uni-kl.de/ftp/pub/" | |
336 | "Math/Singular/SOURCES/" | |
337 | (string-join (string-split version #\.) "-") | |
338 | "/singular-" version ".tar.gz")) | |
339 | (sha256 (base32 | |
340 | "0lc76137072yyizdbmrjwan3gcgfsvp7p6hkvyn8a15la0qqkgg2")))) | |
341 | (build-system gnu-build-system) | |
342 | (native-inputs | |
343 | `(("doxygen" ,doxygen) | |
344 | ("graphviz" ,graphviz) | |
345 | ("perl" ,perl))) | |
346 | (inputs | |
347 | `(("cddlib" ,cddlib) | |
348 | ("gmp" ,gmp) | |
349 | ("flint" ,flint) | |
350 | ("mpfr" ,mpfr) | |
351 | ("ntl" ,ntl) | |
352 | ("python" ,python-2) | |
353 | ("readline" ,readline))) | |
354 | (arguments | |
355 | `(#:configure-flags | |
356 | (list (string-append "--with-ntl=" | |
357 | (assoc-ref %build-inputs "ntl"))))) | |
358 | (synopsis "Computer algebra system for polynomial computations") | |
359 | (description | |
360 | "Singular is a computer algebra system for polynomial computations, | |
361 | with special emphasis on commutative and non-commutative algebra, algebraic | |
362 | geometry and singularity theory.") | |
363 | ;; Singular itself is dual licensed gpl2 or gpl3, but some of the | |
364 | ;; libraries with which it links are licensed under lgpl3+, so the | |
365 | ;; combined work becomes gpl3. See COPYING in the source code. | |
366 | (license license:gpl3) | |
367 | (home-page "http://www.singular.uni-kl.de/index.php"))) | |
368 | ||
ed9f9a77 LC |
369 | (define-public bc |
370 | (package | |
371 | (name "bc") | |
372 | (version "1.06") | |
373 | (source (origin | |
374 | (method url-fetch) | |
375 | (uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz")) | |
376 | (sha256 | |
377 | (base32 | |
378 | "0cqf5jkwx6awgd2xc2a0mkpxilzcfmhncdcfg7c9439wgkqxkxjf")))) | |
379 | (build-system gnu-build-system) | |
c4c4cc05 JD |
380 | (inputs `(("readline" ,readline))) |
381 | (native-inputs `(("flex" ,flex))) | |
ed9f9a77 LC |
382 | (arguments |
383 | '(#:phases | |
384 | (alist-replace 'configure | |
385 | (lambda* (#:key outputs #:allow-other-keys) | |
386 | ;; This old `configure' script doesn't support | |
387 | ;; variables passed as arguments. | |
388 | (let ((out (assoc-ref outputs "out"))) | |
389 | (setenv "CONFIG_SHELL" (which "bash")) | |
390 | (zero? | |
e2ca23c5 MW |
391 | (system* |
392 | "./configure" | |
393 | (string-append "--prefix=" out) | |
394 | ;; By default, man and info pages are put in | |
395 | ;; PREFIX/{man,info}, but we want them in | |
396 | ;; PREFIX/share/{man,info}. | |
397 | (string-append "--mandir=" out "/share/man") | |
398 | (string-append "--infodir=" out "/share/info"))))) | |
ed9f9a77 LC |
399 | %standard-phases))) |
400 | (home-page "http://www.gnu.org/software/bc/") | |
f50d2669 | 401 | (synopsis "Arbitrary precision numeric processing language") |
ed9f9a77 | 402 | (description |
a22dc0c4 LC |
403 | "bc is an arbitrary precision numeric processing language. It includes |
404 | an interactive environment for evaluating mathematical statements. Its | |
405 | syntax is similar to that of C, so basic usage is familiar. It also includes | |
406 | \"dc\", a reverse-polish calculator.") | |
9f51293c | 407 | (license license:gpl2+))) |
37e6cdcd LC |
408 | |
409 | (define-public fftw | |
410 | (package | |
411 | (name "fftw") | |
2cf287df | 412 | (version "3.3.4") |
37e6cdcd LC |
413 | (source (origin |
414 | (method url-fetch) | |
415 | (uri (string-append "ftp://ftp.fftw.org/pub/fftw/fftw-" | |
416 | version".tar.gz")) | |
417 | (sha256 | |
418 | (base32 | |
2cf287df | 419 | "10h9mzjxnwlsjziah4lri85scc05rlajz39nqf3mbh4vja8dw34g")))) |
37e6cdcd LC |
420 | (build-system gnu-build-system) |
421 | (arguments | |
e5c66f8c | 422 | '(#:configure-flags '("--enable-shared" "--enable-openmp") |
37e6cdcd LC |
423 | #:phases (alist-cons-before |
424 | 'build 'no-native | |
425 | (lambda _ | |
426 | ;; By default '-mtune=native' is used. However, that may | |
427 | ;; cause the use of ISA extensions (SSE2, etc.) that are | |
428 | ;; not necessarily available on the user's machine when | |
429 | ;; that package is built on a different machine. | |
430 | (substitute* (find-files "." "Makefile$") | |
431 | (("-mtune=native") ""))) | |
432 | %standard-phases))) | |
433 | (native-inputs `(("perl" ,perl))) | |
434 | (home-page "http://fftw.org") | |
435 | (synopsis "Computing the discrete Fourier transform") | |
436 | (description | |
437 | "FFTW is a C subroutine library for computing the discrete Fourier | |
438 | transform (DFT) in one or more dimensions, of arbitrary input size, and of | |
439 | both real and complex data (as well as of even/odd data---i.e. the discrete | |
440 | cosine/ sine transforms or DCT/DST).") | |
9f51293c | 441 | (license license:gpl2+))) |
7569c5cb EB |
442 | |
443 | (define-public fftwf | |
444 | (package (inherit fftw) | |
445 | (name "fftwf") | |
446 | (arguments | |
447 | (substitute-keyword-arguments (package-arguments fftw) | |
448 | ((#:configure-flags cf) | |
449 | `(cons "--enable-float" ,cf)))) | |
450 | (description | |
451 | (string-append (package-description fftw) | |
452 | " Single-precision version.")))) | |
e5c66f8c EB |
453 | |
454 | (define-public fftw-openmpi | |
455 | (package (inherit fftw) | |
456 | (name "fftw-openmpi") | |
457 | (inputs | |
458 | `(("openmpi" ,openmpi) | |
459 | ,@(package-inputs fftw))) | |
460 | (arguments | |
461 | (substitute-keyword-arguments (package-arguments fftw) | |
462 | ((#:configure-flags cf) | |
463 | `(cons "--enable-mpi" ,cf)))) | |
464 | (description | |
465 | (string-append (package-description fftw) | |
466 | " With OpenMPI parallelism support.")))) | |
8f4b1dfb LC |
467 | |
468 | (define-public eigen | |
469 | (package | |
470 | (name "eigen") | |
2abcc935 | 471 | (version "3.2.7") |
8f4b1dfb LC |
472 | (source (origin |
473 | (method url-fetch) | |
474 | (uri (string-append "https://bitbucket.org/eigen/eigen/get/" | |
9b268f12 | 475 | version ".tar.bz2")) |
8f4b1dfb LC |
476 | (sha256 |
477 | (base32 | |
2abcc935 LC |
478 | "0gigbjjdlw2q0gvcnyiwc6in314a647rkidk6977bwiwn88im3p5")) |
479 | (file-name (string-append name "-" version ".tar.bz2")) | |
8f4b1dfb LC |
480 | (modules '((guix build utils))) |
481 | (snippet | |
482 | ;; There are 3 test failures in the "unsupported" directory, | |
483 | ;; but maintainers say it's a known issue and it's unsupported | |
484 | ;; anyway, so just skip them. | |
485 | '(substitute* "CMakeLists.txt" | |
486 | (("add_subdirectory\\(unsupported\\)") | |
a4eb83b7 LC |
487 | "# Do not build the tests for unsupported features.\n") |
488 | ;; Work around | |
489 | ;; <http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1114>. | |
490 | (("\"include/eigen3\"") | |
491 | "\"${CMAKE_INSTALL_PREFIX}/include/eigen3\""))))) | |
8f4b1dfb LC |
492 | (build-system cmake-build-system) |
493 | (arguments | |
494 | '(;; Turn off debugging symbols to save space. | |
495 | #:build-type "Release" | |
496 | ||
354f4fe2 | 497 | #:phases (modify-phases %standard-phases |
ef8742ea | 498 | (replace 'check |
354f4fe2 | 499 | (lambda _ |
354f4fe2 LC |
500 | (let* ((cores (parallel-job-count)) |
501 | (dash-j (format #f "-j~a" cores))) | |
ef8742ea LC |
502 | ;; First build the tests, in parallel. See |
503 | ;; <http://eigen.tuxfamily.org/index.php?title=Tests>. | |
504 | (and (zero? (system* "make" "buildtests" dash-j)) | |
8f4b1dfb | 505 | |
ef8742ea LC |
506 | ;; Then run 'CTest' with -V so we get more |
507 | ;; details upon failure. | |
508 | (zero? (system* "ctest" "-V" dash-j))))))))) | |
8f4b1dfb LC |
509 | (home-page "http://eigen.tuxfamily.org") |
510 | (synopsis "C++ template library for linear algebra") | |
511 | (description | |
512 | "Eigen is a C++ template library for linear algebra: matrices, vectors, | |
513 | numerical solvers, and related algorithms. It provides an elegant API based | |
514 | on \"expression templates\". It is versatile: it supports all matrix sizes, | |
515 | all standard numeric types, various matrix decompositions and geometry | |
516 | features, and more.") | |
517 | ||
518 | ;; Most of the code is MPLv2, with a few files under LGPLv2.1+ or BSD-3. | |
519 | ;; See 'COPYING.README' for details. | |
9f51293c | 520 | (license license:mpl2.0))) |