Commit | Line | Data |
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056468dc | 1 | ;;; GNU Guix --- Functional package management for GNU |
a3257d42 | 2 | ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> |
ddbf2a98 | 3 | ;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org> |
14b78ca6 | 4 | ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> |
53cc59a1 | 5 | ;;; Copyright © 2017 Raoul Bonnal <ilpuccio.febo@gmail.com> |
109b2f7c | 6 | ;;; Copyright © 2018 Vijayalakshmi Vedantham <vijimay12@gmail.com> |
c56739df | 7 | ;;; Copyright © 2018 Sahithi Yarlagadda <sahi@swecha.net> |
96e22362 | 8 | ;;; Copyright © 2018 Sandeep Subramanian <sandeepsubramanian94@gmail.com> |
d2a507ef | 9 | ;;; Copyright © 2018 Charlie Ritter <chewzeirta@posteo.net> |
1cde7467 | 10 | ;;; Copyright © 2018 Konrad Hinsen <konrad.hinsen@fastmail.net> |
c994418b | 11 | ;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> |
056468dc RW |
12 | ;;; |
13 | ;;; This file is part of GNU Guix. | |
14 | ;;; | |
15 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
16 | ;;; under the terms of the GNU General Public License as published by | |
17 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
18 | ;;; your option) any later version. | |
19 | ;;; | |
20 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
21 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
22 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
23 | ;;; GNU General Public License for more details. | |
24 | ;;; | |
25 | ;;; You should have received a copy of the GNU General Public License | |
26 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
27 | ||
28 | (define-module (gnu packages cran) | |
29 | #:use-module ((guix licenses) #:prefix license:) | |
30 | #:use-module (guix packages) | |
31 | #:use-module (guix download) | |
32 | #:use-module (guix utils) | |
c69d27db | 33 | #:use-module (guix build-system r) |
546fc4aa | 34 | #:use-module (gnu packages compression) |
062b6dbd | 35 | #:use-module (gnu packages gcc) |
f97ce815 | 36 | #:use-module (gnu packages machine-learning) |
521e0703 | 37 | #:use-module (gnu packages maths) |
94989d4b | 38 | #:use-module (gnu packages mpi) |
e0268ff2 | 39 | #:use-module (gnu packages perl) |
e33498b8 | 40 | #:use-module (gnu packages pkg-config) |
9f56ceec | 41 | #:use-module (gnu packages python) |
e0268ff2 | 42 | #:use-module (gnu packages statistics) |
9944399a | 43 | #:use-module (gnu packages tls) |
e0268ff2 | 44 | #:use-module (gnu packages web)) |
056468dc | 45 | |
88e4ed55 RW |
46 | (define-public r-clipr |
47 | (package | |
48 | (name "r-clipr") | |
49 | (version "0.4.1") | |
50 | (source | |
51 | (origin | |
52 | (method url-fetch) | |
53 | (uri (cran-uri "clipr" version)) | |
54 | (sha256 | |
55 | (base32 | |
56 | "061x84ildc7g1p91yw5iyj8lpqdf4hqv36as85lw8c6qv9ywbsqv")))) | |
57 | (build-system r-build-system) | |
58 | (home-page "https://github.com/mdlincoln/clipr") | |
59 | (synopsis "Read and write from the system clipboard") | |
60 | (description | |
61 | "This package provides simple utility functions to read from and write to | |
62 | the system clipboards.") | |
63 | (license license:gpl3))) | |
64 | ||
786d3de2 CR |
65 | (define-public r-tidyverse |
66 | (package | |
67 | (name "r-tidyverse") | |
68 | (version "1.2.1") | |
69 | (source | |
70 | (origin | |
71 | (method url-fetch) | |
72 | (uri (cran-uri "tidyverse" version)) | |
73 | (sha256 | |
74 | (base32 | |
75 | "0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd")))) | |
76 | (build-system r-build-system) | |
77 | (propagated-inputs | |
78 | `(("r-broom" ,r-broom) | |
79 | ("r-cli" ,r-cli) | |
80 | ("r-crayon" ,r-crayon) | |
81 | ("r-dbplyr" ,r-dbplyr) | |
82 | ("r-dplyr" ,r-dplyr) | |
83 | ("r-forcats" ,r-forcats) | |
84 | ("r-ggplot2" ,r-ggplot2) | |
85 | ("r-haven" ,r-haven) | |
86 | ("r-hms" ,r-hms) | |
87 | ("r-httr" ,r-httr) | |
88 | ("r-jsonlite" ,r-jsonlite) | |
89 | ("r-lubridate" ,r-lubridate) | |
90 | ("r-magrittr" ,r-magrittr) | |
91 | ("r-modelr" ,r-modelr) | |
92 | ("r-purrr" ,r-purrr) | |
93 | ("r-readr" ,r-readr) | |
94 | ("r-readxl" ,r-readxl) | |
95 | ("r-reprex" ,r-reprex) | |
96 | ("r-rlang" ,r-rlang) | |
97 | ("r-rstudioapi" ,r-rstudioapi) | |
98 | ("r-rvest" ,r-rvest) | |
99 | ("r-stringr" ,r-stringr) | |
100 | ("r-tibble" ,r-tibble) | |
101 | ("r-tidyr" ,r-tidyr) | |
102 | ("r-xml2" ,r-xml2))) | |
103 | (home-page "https://tidyverse.tidyverse.org") | |
104 | (synopsis "Install and load packages from the \"Tidyverse\"") | |
105 | (description | |
106 | "The @code{tidyverse} is a set of packages that work in harmony because | |
107 | they share common data representations and API design. This package is | |
108 | designed to make it easy to install and load multiple tidyverse packages in a | |
109 | single step.") | |
110 | (license license:gpl3))) | |
111 | ||
8a1ef6ac CR |
112 | (define-public r-rvest |
113 | (package | |
114 | (name "r-rvest") | |
115 | (version "0.3.2") | |
116 | (source | |
117 | (origin | |
118 | (method url-fetch) | |
119 | (uri (cran-uri "rvest" version)) | |
120 | (sha256 | |
121 | (base32 | |
122 | "04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd")))) | |
123 | (build-system r-build-system) | |
124 | (propagated-inputs | |
125 | `(("r-httr" ,r-httr) | |
126 | ("r-magrittr" ,r-magrittr) | |
127 | ("r-selectr" ,r-selectr) | |
128 | ("r-xml2" ,r-xml2))) | |
129 | (home-page "https://github.com/hadley/rvest") | |
130 | (synopsis "Simple web scraping for R") | |
131 | (description | |
132 | "@code{r-rvest} helps you scrape information from web pages. It is | |
133 | designed to work with @code{magrittr} to make it easy to express common web | |
134 | scraping tasks, inspired by libraries like @code{BeautifulSoup}.") | |
135 | (license license:gpl3))) | |
136 | ||
81a9d4a4 CR |
137 | (define-public r-selectr |
138 | (package | |
139 | (name "r-selectr") | |
41e8bd77 | 140 | (version "0.4-1") |
81a9d4a4 CR |
141 | (source |
142 | (origin | |
143 | (method url-fetch) | |
144 | (uri (cran-uri "selectr" version)) | |
145 | (sha256 | |
146 | (base32 | |
41e8bd77 | 147 | "1jp27rxks4w29l47k42869hp8hnkzq2rnvsqbr44wd19fqb2zm4b")))) |
81a9d4a4 | 148 | (build-system r-build-system) |
41e8bd77 RW |
149 | (propagated-inputs |
150 | `(("r-stringr" ,r-stringr) | |
151 | ("r-r6" ,r-r6))) | |
81a9d4a4 CR |
152 | (home-page "https://sjp.co.nz/projects/selectr/") |
153 | (synopsis "Translate CSS selectors to XPath expressions") | |
154 | (description | |
155 | "@code{r-selectr} translates a CSS3 selector into an equivalent XPath | |
156 | expression. This allows you to use CSS selectors when working with the XML | |
157 | package as it can only evaluate XPath expressions. Also provided are | |
158 | convenience functions useful for using CSS selectors on XML nodes. This | |
159 | package is a port of the Python package @code{cssselect}.") | |
160 | (license license:bsd-3))) | |
161 | ||
948740b0 CR |
162 | (define-public r-reprex |
163 | (package | |
164 | (name "r-reprex") | |
e3c1e93e | 165 | (version "0.2.0") |
948740b0 CR |
166 | (source |
167 | (origin | |
168 | (method url-fetch) | |
169 | (uri (cran-uri "reprex" version)) | |
170 | (sha256 | |
171 | (base32 | |
e3c1e93e | 172 | "1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9")))) |
948740b0 CR |
173 | (build-system r-build-system) |
174 | (propagated-inputs | |
175 | `(("r-callr" ,r-callr) | |
e3c1e93e | 176 | ("r-clipr" ,r-clipr) |
948740b0 | 177 | ("r-knitr" ,r-knitr) |
e3c1e93e | 178 | ("r-rlang" ,r-rlang) |
948740b0 | 179 | ("r-rmarkdown" ,r-rmarkdown) |
e3c1e93e RW |
180 | ("r-whisker" ,r-whisker) |
181 | ("r-withr" ,r-withr))) | |
948740b0 CR |
182 | (home-page "https://github.com/tidyverse/reprex") |
183 | (synopsis "Prepare reproducible R code examples for sharing") | |
184 | (description | |
185 | "This package provides a convenience wrapper that uses the | |
186 | @code{rmarkdown} package to render small snippets of code to target formats | |
187 | that include both code and output. The goal is to encourage the sharing of | |
188 | small, reproducible, and runnable examples on code-oriented websites or email. | |
189 | @code{reprex} also extracts clean, runnable R code from various common formats, | |
190 | such as copy/paste from an R session.") | |
191 | (license license:expat))) | |
192 | ||
10487c30 CR |
193 | (define-public r-callr |
194 | (package | |
195 | (name "r-callr") | |
b72de5b3 | 196 | (version "3.0.0") |
10487c30 CR |
197 | (source |
198 | (origin | |
199 | (method url-fetch) | |
200 | (uri (cran-uri "callr" version)) | |
201 | (sha256 | |
202 | (base32 | |
b72de5b3 | 203 | "1rxbxy6kn7dj90z9hpppr9cnpvnxzknba2dwrdp0lrk5dh462qz3")))) |
10487c30 CR |
204 | (build-system r-build-system) |
205 | (propagated-inputs | |
b72de5b3 RW |
206 | `(("r-base64enc" ,r-base64enc) |
207 | ("r-r6" ,r-r6) | |
6034a62a | 208 | ("r-processx" ,r-processx))) |
10487c30 CR |
209 | (home-page "https://github.com/r-lib/callr#readme") |
210 | (synopsis "Call R from R") | |
211 | (description | |
212 | "It is sometimes useful to perform a computation in a separate R process, | |
213 | without affecting the current R process at all. This packages does exactly | |
214 | that.") | |
215 | (license license:expat))) | |
216 | ||
d7637e5e CR |
217 | (define-public r-readxl |
218 | (package | |
219 | (name "r-readxl") | |
1d612cef | 220 | (version "1.1.0") |
d7637e5e CR |
221 | (source |
222 | (origin | |
223 | (method url-fetch) | |
224 | (uri (cran-uri "readxl" version)) | |
225 | (sha256 | |
226 | (base32 | |
1d612cef | 227 | "05ii8knrg4jji6h7bv6bfpn279b6x52yrskdx5rv7b0hcpy22gdn")))) |
d7637e5e CR |
228 | (build-system r-build-system) |
229 | (propagated-inputs | |
230 | `(("r-cellranger" ,r-cellranger) | |
231 | ("r-rcpp" ,r-rcpp) | |
232 | ("r-tibble" ,r-tibble))) | |
233 | (home-page "https://readxl.tidyverse.org") | |
234 | (synopsis "Read Excel files") | |
235 | (description | |
236 | "This package lets you import Excel files into R. It supports | |
237 | @file{.xls} via the embedded @code{libxls} C library and @file{.xlsx} via | |
238 | the embedded @code{RapidXML} C++ library.") | |
239 | ;; XXX: This package bundles a copy of 'libxsl' which is BSD-2 and | |
240 | ;; 'rapidxml' which is Boost. | |
241 | (license (list license:gpl3 license:bsd-2 license:boost1.0)))) | |
242 | ||
9a91c925 CR |
243 | (define-public r-modelr |
244 | (package | |
245 | (name "r-modelr") | |
c8ac880c | 246 | (version "0.1.2") |
9a91c925 CR |
247 | (source |
248 | (origin | |
249 | (method url-fetch) | |
250 | (uri (cran-uri "modelr" version)) | |
251 | (sha256 | |
252 | (base32 | |
c8ac880c | 253 | "09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a")))) |
9a91c925 CR |
254 | (build-system r-build-system) |
255 | (propagated-inputs | |
256 | `(("r-broom" ,r-broom) | |
257 | ("r-dplyr" ,r-dplyr) | |
258 | ("r-lazyeval" ,r-lazyeval) | |
259 | ("r-magrittr" ,r-magrittr) | |
260 | ("r-purrr" ,r-purrr) | |
261 | ("r-tibble" ,r-tibble) | |
262 | ("r-tidyr" ,r-tidyr))) | |
263 | (home-page "https://github.com/tidyverse/modelr") | |
264 | (synopsis "Helper functions for modelling in pipelines") | |
265 | (description | |
266 | "Functions for modelling that help you seamlessly integrate modelling | |
267 | into a pipeline of data manipulation and visualisation.") | |
268 | (license license:gpl3))) | |
269 | ||
d2a507ef CR |
270 | (define-public r-haven |
271 | (package | |
272 | (name "r-haven") | |
35b32367 | 273 | (version "1.1.2") |
d2a507ef CR |
274 | (source |
275 | (origin | |
276 | (method url-fetch) | |
277 | (uri (cran-uri "haven" version)) | |
278 | (sha256 | |
279 | (base32 | |
35b32367 | 280 | "0pp8xjf5lzqg1wr8cwxj4njx99vxwlflwjrd7jvyzwlfpwh7n1qa")))) |
d2a507ef | 281 | (build-system r-build-system) |
35b32367 TGR |
282 | (inputs |
283 | `(("zlib" ,zlib))) | |
d2a507ef CR |
284 | (propagated-inputs |
285 | `(("r-forcats" ,r-forcats) | |
286 | ("r-hms" ,r-hms) | |
287 | ("r-rcpp" ,r-rcpp) | |
288 | ("r-readr" ,r-readr) | |
289 | ("r-tibble" ,r-tibble))) | |
290 | (home-page "https://haven.tidyverse.org") | |
291 | (synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files") | |
292 | (description | |
293 | "This package lets you mport foreign statistical formats into R via the | |
294 | embedded @url{https://github.com/WizardMac/ReadStat,ReadStat} C library.") | |
295 | (license license:expat))) | |
296 | ||
996bed06 RJ |
297 | (define-public r-amap |
298 | (package | |
299 | (name "r-amap") | |
7c2a4646 | 300 | (version "0.8-16") |
996bed06 RJ |
301 | (source (origin |
302 | (method url-fetch) | |
303 | (uri (cran-uri "amap" version)) | |
304 | (sha256 | |
305 | (base32 | |
7c2a4646 | 306 | "1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk")))) |
996bed06 RJ |
307 | (build-system r-build-system) |
308 | (inputs | |
309 | `(("gfortran" ,gfortran))) | |
310 | (home-page "http://mulcyber.toulouse.inra.fr/projects/amap/") | |
311 | (synopsis "Another multidimensional analysis package") | |
312 | (description "This package provides tools for clustering and principal | |
313 | component analysis (with robust methods, and parallelized functions).") | |
314 | (license license:gpl2+))) | |
315 | ||
53cc59a1 RW |
316 | (define-public r-ape |
317 | (package | |
318 | (name "r-ape") | |
e81ef082 | 319 | (version "5.1") |
53cc59a1 RW |
320 | (source |
321 | (origin | |
322 | (method url-fetch) | |
323 | (uri (cran-uri "ape" version)) | |
324 | (sha256 | |
325 | (base32 | |
e81ef082 | 326 | "0vm2065993wf4hdqarxqykhfz9aaj0rrb98alhkq4qw1d2kdrmdp")))) |
53cc59a1 RW |
327 | (build-system r-build-system) |
328 | (propagated-inputs | |
329 | `(("r-lattice" ,r-lattice) | |
330 | ("r-nlme" ,r-nlme) | |
331 | ("r-rcpp" ,r-rcpp))) | |
332 | (home-page "http://ape-package.ird.fr/") | |
333 | (synopsis "Analyses of phylogenetics and evolution") | |
334 | (description | |
335 | "This package provides functions for reading, writing, plotting, and | |
336 | manipulating phylogenetic trees, analyses of comparative data in a | |
337 | phylogenetic framework, ancestral character analyses, analyses of | |
338 | diversification and macroevolution, computing distances from DNA sequences, | |
339 | and several other tools.") | |
340 | (license license:gpl2+))) | |
341 | ||
109b2f7c VV |
342 | (define-public r-abbyyr |
343 | (package | |
344 | (name "r-abbyyr") | |
5479e3e6 | 345 | (version "0.5.4") |
109b2f7c VV |
346 | (source |
347 | (origin | |
348 | (method url-fetch) | |
349 | (uri (cran-uri "abbyyR" version)) | |
350 | (sha256 | |
351 | (base32 | |
5479e3e6 | 352 | "1jh1c1ad6mgw7brdh2isnza1qpjlfxnqr7jl76yd93axyfl76xjx")))) |
109b2f7c VV |
353 | (properties `((upstream-name . "abbyyR"))) |
354 | (build-system r-build-system) | |
355 | (propagated-inputs | |
356 | `(("r-curl" ,r-curl) | |
357 | ("r-httr" ,r-httr) | |
358 | ("r-plyr" ,r-plyr) | |
359 | ("r-progress" ,r-progress) | |
360 | ("r-readr" ,r-readr) | |
361 | ("r-xml" ,r-xml))) | |
362 | (home-page "https://github.com/soodoku/abbyyR") | |
363 | (synopsis "Access to Abbyy Optical Character Recognition (OCR) API") | |
364 | (description | |
365 | "This package provides tools to get text from images of text using Abbyy | |
366 | Cloud Optical Character Recognition (OCR) API. With abbyyyR, one can easily | |
367 | OCR images, barcodes, forms, documents with machine readable zones, e.g. | |
368 | passports and get the results in a variety of formats including plain text and | |
369 | XML. To learn more about the Abbyy OCR API, see @url{http://ocrsdk.com/}.") | |
370 | (license license:expat))) | |
371 | ||
056468dc RW |
372 | (define-public r-colorspace |
373 | (package | |
374 | (name "r-colorspace") | |
375 | (version "1.3-2") | |
376 | (source | |
377 | (origin | |
378 | (method url-fetch) | |
379 | (uri (cran-uri "colorspace" version)) | |
380 | (sha256 | |
381 | (base32 "0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx")))) | |
382 | (build-system r-build-system) | |
e9960d8c | 383 | (home-page "https://cran.r-project.org/web/packages/colorspace") |
056468dc RW |
384 | (synopsis "Color space manipulation") |
385 | (description | |
386 | "This package carries out a mapping between assorted color spaces | |
387 | including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar | |
388 | CIELAB. Qualitative, sequential, and diverging color palettes based on HCL | |
389 | colors are provided.") | |
390 | (license license:bsd-3))) | |
5bee6bf4 RW |
391 | |
392 | (define-public r-glue | |
393 | (package | |
394 | (name "r-glue") | |
b00e8ae7 | 395 | (version "1.3.0") |
5bee6bf4 RW |
396 | (source |
397 | (origin | |
398 | (method url-fetch) | |
399 | (uri (cran-uri "glue" version)) | |
400 | (sha256 | |
401 | (base32 | |
b00e8ae7 | 402 | "1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq")))) |
5bee6bf4 RW |
403 | (build-system r-build-system) |
404 | (home-page "https://github.com/tidyverse/glue") | |
405 | (synopsis "Interpreted string literals") | |
406 | (description | |
407 | "This package provides an implementation of interpreted string literals, | |
408 | inspired by Python's Literal String Interpolation (PEP-0498) and | |
409 | Docstrings (PEP-0257) and Julia's Triple-Quoted String Literals.") | |
410 | (license license:expat))) | |
847b4572 | 411 | |
ddbf2a98 RJ |
412 | (define-public r-pastecs |
413 | (package | |
414 | (name "r-pastecs") | |
415 | (version "1.3.21") | |
416 | (source (origin | |
417 | (method url-fetch) | |
418 | (uri (cran-uri "pastecs" version)) | |
419 | (sha256 | |
420 | (base32 | |
421 | "0z4dic94ar646w7zc2ggi5hgvf2qnznsani94c5pyql8zspz47lc")))) | |
422 | (build-system r-build-system) | |
423 | (propagated-inputs | |
424 | `(("r-boot" ,r-boot))) | |
425 | (home-page "http://www.sciviews.org/pastecs") | |
426 | (synopsis "Analysis of space-time ecological series") | |
427 | (description | |
428 | "This package provides functions for regulation, decomposition and analysis | |
429 | of space-time series. The @code{pastecs} library is a PNEC-Art4 and IFREMER | |
430 | initiative to bring PASSTEC 2000 functionalities to R.") | |
431 | (license license:gpl2+))) | |
432 | ||
847b4572 RW |
433 | (define-public r-plogr |
434 | (package | |
435 | (name "r-plogr") | |
0e947804 | 436 | (version "0.2.0") |
847b4572 RW |
437 | (source |
438 | (origin | |
439 | (method url-fetch) | |
440 | (uri (cran-uri "plogr" version)) | |
441 | (sha256 | |
442 | (base32 | |
0e947804 | 443 | "0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf")))) |
847b4572 RW |
444 | (build-system r-build-system) |
445 | (home-page "https://github.com/krlmlr/plogr") | |
446 | (synopsis "R bindings for the plog C++ logging library") | |
447 | (description | |
448 | "This package provides the header files for a stripped-down version of | |
449 | the plog header-only C++ logging library, and a method to log to R's standard | |
450 | error stream.") | |
451 | (license license:expat))) | |
a8cba9dd | 452 | |
a86049d9 TGR |
453 | (define-public r-pls |
454 | (package | |
455 | (name "r-pls") | |
c73752ca | 456 | (version "2.7-0") |
a86049d9 TGR |
457 | (source |
458 | (origin | |
459 | (method url-fetch) | |
460 | (uri (cran-uri "pls" version)) | |
461 | (sha256 | |
462 | (base32 | |
c73752ca | 463 | "0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x")))) |
a86049d9 TGR |
464 | (build-system r-build-system) |
465 | (home-page "http://mevik.net/work/software/pls.html") | |
466 | (synopsis "Partial Least Squares and Principal Component Regression") | |
467 | (description | |
468 | "The pls package implements multivariate regression methods: Partial Least | |
469 | Squares Regression (@dfn{PLSR}), Principal Component Regression (@dfn{PCR}), and | |
470 | Canonical Powered Partial Least Squares (@dfn{CPPLS}). It supports: | |
471 | ||
472 | @itemize | |
473 | @item several algorithms: the traditional orthogonal scores (@dfn{NIPALS}) PLS | |
474 | algorithm, kernel PLS, wide kernel PLS, Simpls, and PCR through @code{svd} | |
475 | @item multi-response models (or @dfn{PLS2}) | |
476 | @item flexible cross-validation | |
477 | @item Jackknife variance estimates of regression coefficients | |
478 | @item extensive and flexible plots: scores, loadings, predictions, coefficients, | |
479 | (R)MSEP, R², and correlation loadings | |
480 | @item formula interface, modelled after @code{lm()}, with methods for predict, | |
481 | print, summary, plot, update, etc. | |
482 | @item extraction functions for coefficients, scores, and loadings | |
483 | @item MSEP, RMSEP, and R² estimates | |
484 | @item multiplicative scatter correction (@dfn{MSC}) | |
485 | @end itemize\n") | |
486 | (license license:gpl2))) | |
487 | ||
b55e64d4 TGR |
488 | (define-public r-ps |
489 | (package | |
490 | (name "r-ps") | |
491 | (version "1.1.0") | |
492 | (source | |
493 | (origin | |
494 | (method url-fetch) | |
495 | (uri (cran-uri "ps" version)) | |
496 | (sha256 | |
497 | (base32 "1zm9qkyvy1fvcjvmgw51iqw8x1xzkpy7rx7xnchwfj0xpzal0ljx")))) | |
498 | (build-system r-build-system) | |
499 | (home-page "http://ps.r-lib.org") | |
500 | (synopsis "List, query, and manipulate system processes") | |
501 | (description | |
502 | "The ps package implements an API to list, query, and manipulate system | |
503 | processes. Most of its code is based on the @code{psutil} Python package.") | |
504 | (license license:bsd-3))) | |
505 | ||
4f8247b5 RW |
506 | (define-public r-pkgbuild |
507 | (package | |
508 | (name "r-pkgbuild") | |
509 | (version "1.0.0") | |
510 | (source | |
511 | (origin | |
512 | (method url-fetch) | |
513 | (uri (cran-uri "pkgbuild" version)) | |
514 | (sha256 | |
515 | (base32 | |
516 | "10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9")))) | |
517 | (build-system r-build-system) | |
518 | (propagated-inputs | |
519 | `(("r-callr" ,r-callr) | |
520 | ("r-crayon" ,r-crayon) | |
521 | ("r-desc" ,r-desc) | |
522 | ("r-r6" ,r-r6) | |
523 | ("r-rprojroot" ,r-rprojroot) | |
524 | ("r-withr" ,r-withr))) | |
525 | (home-page "https://github.com/r-pkgs/pkgbuild") | |
526 | (synopsis "Find tools needed to build R packages") | |
527 | (description | |
528 | "This package provides functions used to build R packages. It locates | |
529 | compilers needed to build R packages on various platforms and ensures the PATH | |
530 | is configured appropriately so R can use them.") | |
531 | (license license:gpl3))) | |
532 | ||
e362be8e RW |
533 | (define-public r-pkgload |
534 | (package | |
535 | (name "r-pkgload") | |
536 | (version "1.0.0") | |
537 | (source | |
538 | (origin | |
539 | (method url-fetch) | |
540 | (uri (cran-uri "pkgload" version)) | |
541 | (sha256 | |
542 | (base32 | |
543 | "1rjj229nq9fsl4ki4m75ybsavjgpqqhsr1zjzapwicsrxv6212px")))) | |
544 | (build-system r-build-system) | |
545 | (propagated-inputs | |
546 | `(("r-desc" ,r-desc) | |
547 | ("r-pkgbuild" ,r-pkgbuild) | |
548 | ("r-rlang" ,r-rlang) | |
549 | ("r-rprojroot" ,r-rprojroot) | |
550 | ("r-rstudioapi" ,r-rstudioapi) | |
551 | ("r-withr" ,r-withr))) | |
552 | (home-page "https://github.com/r-lib/pkgload") | |
553 | (synopsis "Simulate package installation and attach") | |
554 | (description | |
555 | "This package simulates the process of installing a package and then | |
556 | attaching it. This is a key part of the @code{devtools} package as it allows | |
557 | you to rapidly iterate while developing a package.") | |
558 | (license license:gpl3))) | |
559 | ||
a8cba9dd RW |
560 | (define-public r-rcpp |
561 | (package | |
562 | (name "r-rcpp") | |
51dbad04 | 563 | (version "0.12.18") |
a8cba9dd RW |
564 | (source |
565 | (origin | |
566 | (method url-fetch) | |
567 | (uri (cran-uri "Rcpp" version)) | |
568 | (sha256 | |
51dbad04 | 569 | (base32 "006kpg2ph109rh1l13lqk26pp4as4fvl5661vrcczjygacgd1v7w")))) |
a8cba9dd RW |
570 | (build-system r-build-system) |
571 | (home-page "http://www.rcpp.org") | |
572 | (synopsis "Seamless R and C++ integration") | |
573 | (description | |
574 | "The Rcpp package provides R functions as well as C++ classes which offer | |
575 | a seamless integration of R and C++. Many R data types and objects can be | |
576 | mapped back and forth to C++ equivalents which facilitates both writing of new | |
577 | code as well as easier integration of third-party libraries. Documentation | |
578 | about Rcpp is provided by several vignettes included in this package, via the | |
579 | 'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel | |
580 | and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see | |
581 | 'citation(\"Rcpp\")' for details on these last two.") | |
582 | (license license:gpl2+))) | |
eed58a08 RW |
583 | |
584 | (define-public r-bindr | |
585 | (package | |
586 | (name "r-bindr") | |
eb575e95 | 587 | (version "0.1.1") |
eed58a08 RW |
588 | (source |
589 | (origin | |
590 | (method url-fetch) | |
591 | (uri (cran-uri "bindr" version)) | |
592 | (sha256 | |
593 | (base32 | |
eb575e95 | 594 | "1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w")))) |
eed58a08 RW |
595 | (build-system r-build-system) |
596 | (home-page "https://github.com/krlmlr/bindr") | |
597 | (synopsis "Parametrized active bindings") | |
598 | (description | |
599 | "This package provides a simple interface for creating active bindings | |
600 | where the bound function accepts additional arguments.") | |
601 | (license license:expat))) | |
4bb0b4cc RW |
602 | |
603 | (define-public r-bindrcpp | |
604 | (package | |
605 | (name "r-bindrcpp") | |
9f17c056 | 606 | (version "0.2.2") |
4bb0b4cc RW |
607 | (source |
608 | (origin | |
609 | (method url-fetch) | |
610 | (uri (cran-uri "bindrcpp" version)) | |
611 | (sha256 | |
612 | (base32 | |
9f17c056 | 613 | "0rz4ibjdjsxl99ff3ha79z7cnjmilx4rx58fk9kk7ld9xc4hf4s8")))) |
4bb0b4cc RW |
614 | (build-system r-build-system) |
615 | (propagated-inputs | |
616 | `(("r-bindr" ,r-bindr) | |
617 | ("r-plogr" ,r-plogr) | |
618 | ("r-rcpp" ,r-rcpp))) | |
619 | (home-page "https://github.com/krlmlr/bindrcpp") | |
620 | (synopsis "Rcpp interface to active bindings") | |
621 | (description | |
622 | "This package provides an easy way to fill an environment with active | |
623 | bindings that call a C++ function.") | |
624 | (license license:expat))) | |
33ce12e2 RW |
625 | |
626 | (define-public r-auc | |
627 | (package | |
628 | (name "r-auc") | |
629 | (version "0.3.0") | |
630 | (source | |
631 | (origin | |
632 | (method url-fetch) | |
633 | (uri (cran-uri "AUC" version)) | |
634 | (sha256 | |
635 | (base32 | |
636 | "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7")))) | |
637 | (properties `((upstream-name . "AUC"))) | |
638 | (build-system r-build-system) | |
e9960d8c | 639 | (home-page "https://cran.r-project.org/web/packages/AUC") |
33ce12e2 RW |
640 | (synopsis "Compute the area under the curve of selected measures") |
641 | (description | |
642 | "This package includes functions to compute the area under the curve of | |
643 | selected measures: the area under the sensitivity curve (AUSEC), the area | |
644 | under the specificity curve (AUSPC), the area under the accuracy | |
645 | curve (AUACC), and the area under the receiver operating characteristic | |
646 | curve (AUROC). The curves can also be visualized. Support for partial areas | |
647 | is provided.") | |
648 | (license license:gpl2+))) | |
c69d27db RW |
649 | |
650 | (define-public r-calibrate | |
651 | (package | |
652 | (name "r-calibrate") | |
653 | (version "1.7.2") | |
654 | (source | |
655 | (origin | |
656 | (method url-fetch) | |
657 | (uri (cran-uri "calibrate" version)) | |
658 | (sha256 | |
659 | (base32 | |
660 | "010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq")))) | |
661 | (build-system r-build-system) | |
662 | (propagated-inputs | |
663 | `(("r-mass" ,r-mass))) | |
e9960d8c | 664 | (home-page "https://cran.r-project.org/web/packages/calibrate") |
c69d27db RW |
665 | (synopsis "Calibration of scatterplot and biplot axes") |
666 | (description | |
667 | "This is a package for drawing calibrated scales with tick marks | |
668 | on (non-orthogonal) variable vectors in scatterplots and biplots.") | |
669 | (license license:gpl2))) | |
2bdb5c3f RW |
670 | |
671 | (define-public r-shape | |
672 | (package | |
673 | (name "r-shape") | |
fe5b8893 | 674 | (version "1.4.4") |
2bdb5c3f RW |
675 | (source |
676 | (origin | |
677 | (method url-fetch) | |
678 | (uri (cran-uri "shape" version)) | |
679 | (sha256 | |
680 | (base32 | |
fe5b8893 | 681 | "0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl")))) |
2bdb5c3f | 682 | (build-system r-build-system) |
e9960d8c | 683 | (home-page "https://cran.r-project.org/web/packages/shape") |
2bdb5c3f RW |
684 | (synopsis "Functions for plotting graphical shapes") |
685 | (description | |
686 | "This package provides functions for plotting graphical shapes such as | |
687 | ellipses, circles, cylinders, arrows, ...") | |
688 | (license license:gpl3+))) | |
4847a62e RW |
689 | |
690 | (define-public r-globaloptions | |
691 | (package | |
692 | (name "r-globaloptions") | |
693b4d0b | 693 | (version "0.1.0") |
4847a62e RW |
694 | (source |
695 | (origin | |
696 | (method url-fetch) | |
697 | (uri (cran-uri "GlobalOptions" version)) | |
698 | (sha256 | |
699 | (base32 | |
693b4d0b | 700 | "1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn")))) |
4847a62e RW |
701 | (properties `((upstream-name . "GlobalOptions"))) |
702 | (build-system r-build-system) | |
703 | (home-page "https://github.com/jokergoo/GlobalOptions") | |
704 | (synopsis "Generate functions to get or set global options") | |
705 | (description | |
706 | "This package provides more controls on the option values such as | |
707 | validation and filtering on the values, making options invisible or private.") | |
708 | (license license:gpl2+))) | |
2856369f RW |
709 | |
710 | (define-public r-circlize | |
711 | (package | |
712 | (name "r-circlize") | |
7b60ab3d | 713 | (version "0.4.4") |
2856369f RW |
714 | (source |
715 | (origin | |
716 | (method url-fetch) | |
717 | (uri (cran-uri "circlize" version)) | |
718 | (sha256 | |
719 | (base32 | |
7b60ab3d | 720 | "1l28maiqi549z191srncxgabx5fnvf0lld7smzwfd3vr5cx8nqww")))) |
2856369f RW |
721 | (build-system r-build-system) |
722 | (propagated-inputs | |
723 | `(("r-colorspace" ,r-colorspace) | |
724 | ("r-globaloptions" ,r-globaloptions) | |
725 | ("r-shape" ,r-shape))) | |
726 | (home-page "https://github.com/jokergoo/circlize") | |
727 | (synopsis "Circular visualization") | |
728 | (description | |
031462ba TGR |
729 | "Circular layout is an efficient way to visualise huge amounts of |
730 | information. This package provides an implementation of circular layout | |
731 | generation in R as well as an enhancement of available software. Its | |
732 | flexibility is based on the usage of low-level graphics functions such that | |
733 | self-defined high-level graphics can be easily implemented by users for | |
734 | specific purposes. Together with the seamless connection between the powerful | |
735 | computational and visual environment in R, it gives users more convenience and | |
736 | freedom to design figures for better understanding complex patterns behind | |
737 | multi-dimensional data.") | |
2856369f | 738 | (license license:gpl2+))) |
5cc79c9c RW |
739 | |
740 | (define-public r-powerlaw | |
741 | (package | |
742 | (name "r-powerlaw") | |
eeb54328 | 743 | (version "0.70.1") |
5cc79c9c RW |
744 | (source |
745 | (origin | |
746 | (method url-fetch) | |
747 | (uri (cran-uri "poweRlaw" version)) | |
748 | (sha256 | |
749 | (base32 | |
eeb54328 | 750 | "04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m")))) |
5cc79c9c RW |
751 | (properties `((upstream-name . "poweRlaw"))) |
752 | (build-system r-build-system) | |
753 | (propagated-inputs | |
754 | `(("r-vgam" ,r-vgam))) | |
755 | (home-page "https://github.com/csgillespie/poweRlaw") | |
756 | (synopsis "Tools for the analysis of heavy tailed distributions") | |
757 | (description | |
758 | "This package provides an implementation of maximum likelihood estimators | |
759 | for a variety of heavy tailed distributions, including both the discrete and | |
760 | continuous power law distributions. Additionally, a goodness-of-fit based | |
761 | approach is used to estimate the lower cut-off for the scaling region.") | |
762 | ;; Any of these GPL versions. | |
763 | (license (list license:gpl2 license:gpl3)))) | |
05486604 RW |
764 | |
765 | (define-public r-compare | |
766 | (package | |
767 | (name "r-compare") | |
768 | (version "0.2-6") | |
769 | (source | |
770 | (origin | |
771 | (method url-fetch) | |
772 | (uri (cran-uri "compare" version)) | |
773 | (sha256 | |
774 | (base32 | |
775 | "0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw")))) | |
776 | (build-system r-build-system) | |
e9960d8c | 777 | (home-page "https://cran.r-project.org/web/packages/compare") |
05486604 RW |
778 | (synopsis "Comparing objects for differences") |
779 | (description | |
780 | "This package provides functions to compare a model object to a | |
781 | comparison object. If the objects are not identical, the functions can be | |
782 | instructed to explore various modifications of the objects (e.g., sorting | |
783 | rows, dropping names) to see if the modified versions are identical.") | |
784 | (license license:gpl2+))) | |
d3c67e1b RW |
785 | |
786 | (define-public r-dendextend | |
787 | (package | |
788 | (name "r-dendextend") | |
b25c54ad | 789 | (version "1.8.0") |
d3c67e1b RW |
790 | (source |
791 | (origin | |
792 | (method url-fetch) | |
793 | (uri (cran-uri "dendextend" version)) | |
794 | (sha256 | |
795 | (base32 | |
b25c54ad | 796 | "1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh")))) |
d3c67e1b RW |
797 | (build-system r-build-system) |
798 | (propagated-inputs | |
799 | `(("r-fpc" ,r-fpc) | |
800 | ("r-ggplot2" ,r-ggplot2) | |
801 | ("r-magrittr" ,r-magrittr) | |
802 | ("r-viridis" ,r-viridis) | |
803 | ("r-whisker" ,r-whisker))) | |
804 | (home-page "https://cran.r-project.org/web/packages/dendextend") | |
805 | (synopsis "Extending 'dendrogram' functionality in R") | |
806 | (description | |
807 | "This package offers a set of functions for extending @code{dendrogram} | |
808 | objects in R, letting you visualize and compare trees of hierarchical | |
809 | clusterings. You can adjust a tree's graphical parameters (the color, size, | |
810 | type, etc of its branches, nodes and labels) and visually and statistically | |
811 | compare different dendrograms to one another.") | |
812 | ;; Any of these versions | |
813 | (license (list license:gpl2 license:gpl3)))) | |
e0268ff2 RW |
814 | |
815 | (define-public r-getoptlong | |
816 | (package | |
817 | (name "r-getoptlong") | |
5fa9be11 | 818 | (version "0.1.7") |
e0268ff2 RW |
819 | (source |
820 | (origin | |
821 | (method url-fetch) | |
822 | (uri (cran-uri "GetoptLong" version)) | |
823 | (sha256 | |
824 | (base32 | |
5fa9be11 | 825 | "1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr")))) |
e0268ff2 RW |
826 | (properties `((upstream-name . "GetoptLong"))) |
827 | (build-system r-build-system) | |
828 | (inputs | |
829 | `(("perl" ,perl))) | |
830 | (propagated-inputs | |
831 | `(("r-globaloptions" ,r-globaloptions) | |
832 | ("r-rjson" ,r-rjson))) | |
833 | (home-page "https://github.com/jokergoo/GetoptLong") | |
834 | (synopsis "Parsing command-line arguments and variable interpolation") | |
835 | (description | |
836 | "This is yet another command-line argument parser which wraps the | |
837 | powerful Perl module @code{Getopt::Long} and with some adaptation for easier | |
838 | use in R. It also provides a simple way for variable interpolation in R.") | |
839 | (license license:gpl2+))) | |
f2e974e1 RW |
840 | |
841 | (define-public r-fastmatch | |
842 | (package | |
843 | (name "r-fastmatch") | |
844 | (version "1.1-0") | |
845 | (source | |
846 | (origin | |
847 | (method url-fetch) | |
848 | (uri (cran-uri "fastmatch" version)) | |
849 | (sha256 | |
850 | (base32 | |
851 | "0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90")))) | |
852 | (build-system r-build-system) | |
853 | (home-page "http://www.rforge.net/fastmatch") | |
854 | (synopsis "Fast match function") | |
855 | (description | |
856 | "This package provides a fast @code{match} replacement for cases that | |
857 | require repeated look-ups. It is slightly faster that R's built-in | |
858 | @code{match} function on first match against a table, but extremely fast on | |
859 | any subsequent lookup as it keeps the hash table in memory.") | |
860 | (license license:gpl2))) | |
a7f0faa2 RW |
861 | |
862 | (define-public r-ff | |
863 | (package | |
864 | (name "r-ff") | |
207c497e | 865 | (version "2.2-14") |
a7f0faa2 RW |
866 | (source |
867 | (origin | |
868 | (method url-fetch) | |
869 | (uri (cran-uri "ff" version)) | |
870 | (sha256 | |
871 | (base32 | |
207c497e | 872 | "1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw")))) |
a7f0faa2 RW |
873 | (build-system r-build-system) |
874 | (propagated-inputs `(("r-bit" ,r-bit))) | |
875 | (home-page "http://ff.r-forge.r-project.org/") | |
876 | (synopsis "Memory-efficient storage of large data on disk and access functions") | |
877 | (description | |
878 | "This package provides data structures that are stored on disk but | |
879 | behave (almost) as if they were in RAM by transparently mapping only a section | |
880 | in main memory.") | |
a6e67d86 EF |
881 | ;; error Architecture not supported. |
882 | (supported-systems (delete "aarch64-linux" %supported-systems)) | |
a7f0faa2 | 883 | (license license:gpl2))) |
49c9c297 RW |
884 | |
885 | (define-public r-ffbase | |
886 | (package | |
887 | (name "r-ffbase") | |
888 | (version "0.12.3") | |
889 | (source | |
890 | (origin | |
891 | (method url-fetch) | |
892 | (uri (cran-uri "ffbase" version)) | |
893 | (sha256 | |
894 | (base32 | |
895 | "1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5")))) | |
896 | (build-system r-build-system) | |
897 | (propagated-inputs | |
898 | `(("r-bit" ,r-bit) | |
899 | ("r-fastmatch" ,r-fastmatch) | |
900 | ("r-ff" ,r-ff))) | |
901 | (home-page "http://github.com/edwindj/ffbase") | |
902 | (synopsis "Basic statistical functions for package 'ff'") | |
903 | (description | |
904 | "This package extends the out of memory vectors of @code{ff} with | |
905 | statistical functions and other utilities to ease their usage.") | |
906 | (license license:gpl3))) | |
18a16ceb RW |
907 | |
908 | (define-public r-prettyunits | |
909 | (package | |
910 | (name "r-prettyunits") | |
911 | (version "1.0.2") | |
912 | (source | |
913 | (origin | |
914 | (method url-fetch) | |
915 | (uri (cran-uri "prettyunits" version)) | |
916 | (sha256 | |
917 | (base32 | |
918 | "0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m")))) | |
919 | (build-system r-build-system) | |
920 | (propagated-inputs | |
921 | `(("r-assertthat" ,r-assertthat) | |
922 | ("r-magrittr" ,r-magrittr))) | |
923 | (home-page "https://github.com/gaborcsardi/prettyunits") | |
924 | (synopsis "Pretty, human readable formatting of quantities") | |
925 | (description | |
926 | "This package provides tools for pretty, human readable formatting of | |
927 | quantities.") | |
928 | (license license:expat))) | |
71be51d5 RW |
929 | |
930 | (define-public r-reshape | |
931 | (package | |
932 | (name "r-reshape") | |
38ea6cfa | 933 | (version "0.8.7") |
71be51d5 RW |
934 | (source |
935 | (origin | |
936 | (method url-fetch) | |
937 | (uri (cran-uri "reshape" version)) | |
938 | (sha256 | |
939 | (base32 | |
38ea6cfa | 940 | "14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig")))) |
71be51d5 RW |
941 | (build-system r-build-system) |
942 | (propagated-inputs | |
943 | `(("r-plyr" ,r-plyr) | |
944 | ("r-rcpp" ,r-rcpp))) | |
945 | (home-page "http://had.co.nz/reshape") | |
946 | (synopsis "Flexibly reshape data") | |
947 | (description | |
948 | "Flexibly restructure and aggregate data using just two functions: | |
949 | @code{melt} and @code{cast}. This package provides them.") | |
950 | (license license:expat))) | |
c9c6f4b5 RW |
951 | |
952 | (define-public r-progress | |
953 | (package | |
954 | (name "r-progress") | |
9de9dcd9 | 955 | (version "1.2.0") |
c9c6f4b5 RW |
956 | (source |
957 | (origin | |
958 | (method url-fetch) | |
959 | (uri (cran-uri "progress" version)) | |
960 | (sha256 | |
961 | (base32 | |
9de9dcd9 | 962 | "1rhwm0bdw30z3rvl0bn56xprjl3zrdy7150w4gl4bkvn2d6h9fav")))) |
c9c6f4b5 RW |
963 | (build-system r-build-system) |
964 | (propagated-inputs | |
9de9dcd9 RW |
965 | `(("r-crayon" ,r-crayon) |
966 | ("r-hms" ,r-hms) | |
967 | ("r-prettyunits" ,r-prettyunits) | |
c9c6f4b5 RW |
968 | ("r-r6" ,r-r6))) |
969 | (home-page "https://github.com/gaborcsardi/progress") | |
970 | (synopsis "Terminal progress bars") | |
971 | (description | |
972 | "This package provides configurable progress bars. They may include | |
973 | percentage, elapsed time, and/or the estimated completion time. They work in | |
974 | terminals, in Emacs ESS, RStudio, Windows Rgui, and the macOS R.app. The | |
975 | package also provides a C++ API, that works with or without Rcpp.") | |
976 | (license license:expat))) | |
ac840207 RW |
977 | |
978 | (define-public r-ggally | |
979 | (package | |
980 | (name "r-ggally") | |
9944399a | 981 | (version "1.4.0") |
ac840207 RW |
982 | (source |
983 | (origin | |
984 | (method url-fetch) | |
985 | (uri (cran-uri "GGally" version)) | |
986 | (sha256 | |
987 | (base32 | |
9944399a | 988 | "1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws")))) |
ac840207 RW |
989 | (properties `((upstream-name . "GGally"))) |
990 | (build-system r-build-system) | |
9944399a RW |
991 | (inputs |
992 | `(("libressl" ,libressl))) | |
ac840207 RW |
993 | (propagated-inputs |
994 | `(("r-ggplot2" ,r-ggplot2) | |
995 | ("r-gtable" ,r-gtable) | |
996 | ("r-plyr" ,r-plyr) | |
997 | ("r-progress" ,r-progress) | |
998 | ("r-rcolorbrewer" ,r-rcolorbrewer) | |
9944399a RW |
999 | ("r-reshape" ,r-reshape) |
1000 | ("r-rlang" ,r-rlang))) | |
ac840207 RW |
1001 | (home-page "https://ggobi.github.io/ggally") |
1002 | (synopsis "Extension to ggplot2") | |
1003 | (description | |
1004 | "The R package ggplot2 is a plotting system based on the grammar of | |
1005 | graphics. GGally extends ggplot2 by adding several functions to reduce the | |
1006 | complexity of combining geometric objects with transformed data. Some of | |
1007 | these functions include a pairwise plot matrix, a two group pairwise plot | |
1008 | matrix, a parallel coordinates plot, a survival plot, and several functions to | |
1009 | plot networks.") | |
1010 | (license license:gpl2+))) | |
3349faec RW |
1011 | |
1012 | (define-public r-proxy | |
1013 | (package | |
1014 | (name "r-proxy") | |
e7c4ad7d | 1015 | (version "0.4-22") |
3349faec RW |
1016 | (source |
1017 | (origin | |
1018 | (method url-fetch) | |
1019 | (uri (cran-uri "proxy" version)) | |
1020 | (sha256 | |
1021 | (base32 | |
e7c4ad7d | 1022 | "0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma")))) |
3349faec | 1023 | (build-system r-build-system) |
e9960d8c | 1024 | (home-page "https://cran.r-project.org/web/packages/proxy") |
3349faec RW |
1025 | (synopsis "Distance and similarity measures") |
1026 | (description | |
1027 | "This package provides an extensible framework for the efficient | |
1028 | calculation of auto- and cross-proximities, along with implementations of the | |
1029 | most popular ones.") | |
1030 | (license license:gpl2))) | |
bc0081e7 RW |
1031 | |
1032 | (define-public r-sp | |
1033 | (package | |
1034 | (name "r-sp") | |
d87130cb | 1035 | (version "1.3-1") |
bc0081e7 RW |
1036 | (source |
1037 | (origin | |
1038 | (method url-fetch) | |
1039 | (uri (cran-uri "sp" version)) | |
1040 | (sha256 | |
1041 | (base32 | |
d87130cb | 1042 | "17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p")))) |
bc0081e7 RW |
1043 | (build-system r-build-system) |
1044 | (propagated-inputs | |
1045 | `(("r-lattice" ,r-lattice))) | |
e9960d8c | 1046 | (home-page "https://cran.r-project.org/web/packages/sp") |
bc0081e7 RW |
1047 | (synopsis "Classes and methods for spatial data") |
1048 | (description | |
1049 | "This package provides classes and methods for spatial data; the classes | |
1050 | document where the spatial location information resides, for 2D or 3D data. | |
1051 | Utility functions are provided, e.g. for plotting data as maps, spatial | |
1052 | selection, as well as methods for retrieving coordinates, for subsetting, | |
1053 | print, summary, etc.") | |
1054 | (license license:gpl2+))) | |
e389d10f RW |
1055 | |
1056 | (define-public r-rmtstat | |
1057 | (package | |
1058 | (name "r-rmtstat") | |
1059 | (version "0.3") | |
1060 | (source | |
1061 | (origin | |
1062 | (method url-fetch) | |
1063 | (uri (cran-uri "RMTstat" version)) | |
1064 | (sha256 | |
1065 | (base32 | |
1066 | "1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1")))) | |
1067 | (properties `((upstream-name . "RMTstat"))) | |
1068 | (build-system r-build-system) | |
e9960d8c | 1069 | (home-page "https://cran.r-project.org/web/packages/RMTstat") |
e389d10f RW |
1070 | (synopsis "Distributions, statistics and tests derived from random matrix theory") |
1071 | (description | |
1072 | "This package provides functions for working with the Tracy-Widom laws | |
1073 | and other distributions related to the eigenvalues of large Wishart | |
1074 | matrices.") | |
1075 | (license license:bsd-3))) | |
6427e620 | 1076 | |
94989d4b RJ |
1077 | (define-public r-rmpi |
1078 | (package | |
1079 | (name "r-rmpi") | |
9ebfdcd3 | 1080 | (version "0.6-7") |
94989d4b RJ |
1081 | (source (origin |
1082 | (method url-fetch) | |
1083 | (uri (cran-uri "Rmpi" version)) | |
1084 | (sha256 | |
1085 | (base32 | |
9ebfdcd3 | 1086 | "1b62gs7w1xqadqd7ir41jnxlcf14gcqfxd0915kn9ckdlsdrh0sw")))) |
94989d4b RJ |
1087 | (properties `((upstream-name . "Rmpi"))) |
1088 | (build-system r-build-system) | |
1089 | (arguments | |
1090 | `(#:configure-flags '("--configure-args=\"--with-Rmpi-type=OPENMPI\""))) | |
1091 | (inputs | |
1092 | `(("openmpi" ,openmpi))) | |
9ebfdcd3 RW |
1093 | (native-inputs |
1094 | `(("pkg-config" ,pkg-config))) | |
94989d4b RJ |
1095 | (home-page "http://www.stats.uwo.ca/faculty/yu/Rmpi") |
1096 | (synopsis "R interface to message-passing interface (MPI)") | |
1097 | (description | |
1098 | "This package provides an interface (wrapper) to MPI APIs. It also | |
1099 | provides an interactive R manager and worker environment.") | |
1100 | (license license:gpl2+))) | |
1101 | ||
6427e620 RW |
1102 | (define-public r-lmoments |
1103 | (package | |
1104 | (name "r-lmoments") | |
1105 | (version "1.2-3") | |
1106 | (source | |
1107 | (origin | |
1108 | (method url-fetch) | |
1109 | (uri (cran-uri "Lmoments" version)) | |
1110 | (sha256 | |
1111 | (base32 | |
1112 | "13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79")))) | |
1113 | (properties `((upstream-name . "Lmoments"))) | |
1114 | (build-system r-build-system) | |
1115 | (home-page "http://www.tilastotiede.fi/juha_karvanen.html") | |
1116 | (synopsis "L-moments and quantile mixtures") | |
1117 | (description | |
1118 | "This package contains functions to estimate L-moments and trimmed | |
1119 | L-moments from the data. It also contains functions to estimate the | |
1120 | parameters of the normal polynomial quantile mixture and the Cauchy polynomial | |
1121 | quantile mixture from L-moments and trimmed L-moments.") | |
1122 | (license license:gpl2))) | |
28476b4b RW |
1123 | |
1124 | (define-public r-distillery | |
1125 | (package | |
1126 | (name "r-distillery") | |
28f2f893 | 1127 | (version "1.0-4") |
28476b4b RW |
1128 | (source |
1129 | (origin | |
1130 | (method url-fetch) | |
1131 | (uri (cran-uri "distillery" version)) | |
1132 | (sha256 | |
1133 | (base32 | |
28f2f893 | 1134 | "1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix")))) |
28476b4b RW |
1135 | (build-system r-build-system) |
1136 | (home-page "http://www.ral.ucar.edu/staff/ericg") | |
1137 | (synopsis "Functions for confidence intervals and object information") | |
1138 | (description | |
1139 | "This package provides some very simple method functions for confidence | |
1140 | interval calculation and to distill pertinent information from a potentially | |
1141 | complex object; primarily used in common with the packages extRemes and | |
1142 | SpatialVx.") | |
1143 | (license license:gpl2+))) | |
58db98c9 RW |
1144 | |
1145 | (define-public r-extremes | |
1146 | (package | |
1147 | (name "r-extremes") | |
a151f1e6 | 1148 | (version "2.0-9") |
58db98c9 RW |
1149 | (source |
1150 | (origin | |
1151 | (method url-fetch) | |
1152 | (uri (cran-uri "extRemes" version)) | |
1153 | (sha256 | |
1154 | (base32 | |
a151f1e6 | 1155 | "0cpvcajk9xyy7662nqkyx333vrxpwsc5nmv0bfnhsbgijz5y0hvm")))) |
58db98c9 RW |
1156 | (properties `((upstream-name . "extRemes"))) |
1157 | (build-system r-build-system) | |
1158 | (propagated-inputs | |
1159 | `(("r-car" ,r-car) | |
1160 | ("r-distillery" ,r-distillery) | |
1161 | ("r-lmoments" ,r-lmoments))) | |
1162 | (home-page "http://www.assessment.ucar.edu/toolkit/") | |
1163 | (synopsis "Extreme value analysis") | |
1164 | (description | |
1165 | "ExtRemes is a suite of functions for carrying out analyses on the | |
1166 | extreme values of a process of interest; be they block maxima over long blocks | |
1167 | or excesses over a high threshold.") | |
1168 | (license license:gpl2+))) | |
062b6dbd RW |
1169 | |
1170 | (define-public r-lmtest | |
1171 | (package | |
1172 | (name "r-lmtest") | |
ba578d93 | 1173 | (version "0.9-36") |
062b6dbd RW |
1174 | (source |
1175 | (origin | |
1176 | (method url-fetch) | |
1177 | (uri (cran-uri "lmtest" version)) | |
1178 | (sha256 | |
1179 | (base32 | |
ba578d93 | 1180 | "0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy")))) |
062b6dbd RW |
1181 | (build-system r-build-system) |
1182 | (propagated-inputs | |
1183 | `(("r-zoo" ,r-zoo))) | |
1184 | (native-inputs | |
1185 | `(("gfortran" ,gfortran))) | |
e9960d8c | 1186 | (home-page "https://cran.r-project.org/web/packages/lmtest") |
062b6dbd RW |
1187 | (synopsis "Testing linear regression models") |
1188 | (description | |
1189 | "This package provides a collection of tests, data sets, and examples for | |
1190 | diagnostic checking in linear regression models. Furthermore, some generic | |
1191 | tools for inference in parametric models are provided.") | |
1192 | ;; Either version is okay | |
1193 | (license (list license:gpl2 license:gpl3)))) | |
d6b156dc | 1194 | |
c974008d RJ |
1195 | (define-public r-idr |
1196 | (package | |
1197 | (name "r-idr") | |
1198 | (version "1.2") | |
1199 | (source (origin | |
1200 | (method url-fetch) | |
1201 | (uri (cran-uri "idr" version)) | |
1202 | (sha256 | |
1203 | (base32 | |
1204 | "05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb")))) | |
1205 | (build-system r-build-system) | |
1206 | (home-page "https://cran.r-project.org/web/packages/idr/") | |
1207 | (synopsis "Irreproducible discovery rate") | |
1208 | (description | |
1209 | "This is a package for estimating the copula mixture model and plotting | |
1210 | correspondence curves in \"Measuring reproducibility of high-throughput | |
1211 | experiments\" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, | |
1212 | by Li, Brown, Huang, and Bickel") | |
1213 | (license license:gpl2+))) | |
1214 | ||
d6b156dc RW |
1215 | (define-public r-inline |
1216 | (package | |
1217 | (name "r-inline") | |
0acbf8bb | 1218 | (version "0.3.15") |
d6b156dc RW |
1219 | (source (origin |
1220 | (method url-fetch) | |
1221 | (uri (cran-uri "inline" version)) | |
1222 | (sha256 | |
1223 | (base32 | |
0acbf8bb | 1224 | "0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z")))) |
d6b156dc | 1225 | (build-system r-build-system) |
e9960d8c | 1226 | (home-page "https://cran.r-project.org/web/packages/inline") |
d6b156dc RW |
1227 | (synopsis "Functions to inline C, C++, Fortran function calls from R") |
1228 | (description | |
1229 | "This package provides functionality to dynamically define R functions | |
1230 | and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and | |
1231 | @code{.Call} calling conventions.") | |
1232 | ;; Any version of the LGPL. | |
1233 | (license license:lgpl3+))) | |
8c72b830 RW |
1234 | |
1235 | (define-public r-bbmle | |
1236 | (package | |
1237 | (name "r-bbmle") | |
84078220 | 1238 | (version "1.0.20") |
8c72b830 RW |
1239 | (source |
1240 | (origin | |
1241 | (method url-fetch) | |
1242 | (uri (cran-uri "bbmle" version)) | |
1243 | (sha256 | |
1244 | (base32 | |
84078220 | 1245 | "1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc")))) |
8c72b830 RW |
1246 | (build-system r-build-system) |
1247 | (propagated-inputs | |
1248 | `(("r-lattice" ,r-lattice) | |
1249 | ("r-mass" ,r-mass) | |
1250 | ("r-numderiv" ,r-numderiv))) | |
e9960d8c | 1251 | (home-page "https://cran.r-project.org/web/packages/bbmle") |
8c72b830 RW |
1252 | (synopsis "Tools for General Maximum Likelihood Estimation") |
1253 | (description | |
c151b0b6 RW |
1254 | "This package provides methods and functions for fitting maximum |
1255 | likelihood models in R. This package modifies and extends the @code{mle} | |
1256 | classes in the @code{stats4} package.") | |
8c72b830 | 1257 | ;; Any version of the GPL |
c151b0b6 | 1258 | (license license:gpl2+))) |
b31e4a96 RW |
1259 | |
1260 | (define-public r-emdbook | |
1261 | (package | |
1262 | (name "r-emdbook") | |
90f1ecb9 | 1263 | (version "1.3.10") |
b31e4a96 RW |
1264 | (source |
1265 | (origin | |
1266 | (method url-fetch) | |
1267 | (uri (cran-uri "emdbook" version)) | |
1268 | (sha256 | |
1269 | (base32 | |
90f1ecb9 | 1270 | "0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv")))) |
b31e4a96 RW |
1271 | (build-system r-build-system) |
1272 | (propagated-inputs | |
1273 | `(("r-bbmle" ,r-bbmle) | |
1274 | ("r-coda" ,r-coda) | |
1275 | ("r-lattice" ,r-lattice) | |
1276 | ("r-mass" ,r-mass) | |
1277 | ("r-plyr" ,r-plyr) | |
1278 | ("r-rcpp" ,r-rcpp))) | |
1279 | (home-page "http://www.math.mcmaster.ca/bolker/emdbook") | |
1280 | (synopsis "Support functions and data for \"Ecological Models and Data\"") | |
1281 | (description | |
1282 | "This package provides auxiliary functions and data sets for \"Ecological | |
1283 | Models and Data\", a book presenting maximum likelihood estimation and related | |
1284 | topics for ecologists (ISBN 978-0-691-12522-0).") | |
1285 | ;; Any GPL version | |
1286 | (license (list license:gpl2 license:gpl3)))) | |
a3e36d37 RW |
1287 | |
1288 | (define-public r-lpsolve | |
1289 | (package | |
1290 | (name "r-lpsolve") | |
1291 | (version "5.6.13") | |
1292 | (source | |
1293 | (origin | |
1294 | (method url-fetch) | |
1295 | (uri (cran-uri "lpSolve" version)) | |
1296 | (sha256 | |
1297 | (base32 | |
1298 | "13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m")))) | |
1299 | (properties `((upstream-name . "lpSolve"))) | |
1300 | (build-system r-build-system) | |
e9960d8c | 1301 | (home-page "https://cran.r-project.org/web/packages/lpSolve") |
a3e36d37 RW |
1302 | (synopsis "R interface to Lp_solve to solve linear/integer programs") |
1303 | (description | |
1304 | "Lp_solve is software for solving linear, integer and mixed integer | |
1305 | programs. This implementation supplies a \"wrapper\" function in C and some R | |
1306 | functions that solve general linear/integer problems, assignment problems, and | |
1307 | transportation problems.") | |
1308 | (license license:lgpl2.0))) | |
521e0703 RW |
1309 | |
1310 | (define-public r-limsolve | |
1311 | (package | |
1312 | (name "r-limsolve") | |
1313 | (version "1.5.5.3") | |
1314 | (source | |
1315 | (origin | |
1316 | (method url-fetch) | |
1317 | (uri (cran-uri "limSolve" version)) | |
1318 | (sha256 | |
1319 | (base32 | |
1320 | "1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg")))) | |
1321 | (properties `((upstream-name . "limSolve"))) | |
1322 | (build-system r-build-system) | |
1323 | (propagated-inputs | |
1324 | `(("r-lpsolve" ,r-lpsolve) | |
1325 | ("r-mass" ,r-mass) | |
1326 | ("r-quadprog" ,r-quadprog))) | |
1327 | (native-inputs `(("gfortran" ,gfortran))) | |
e9960d8c | 1328 | (home-page "https://cran.r-project.org/web/packages/limSolve") |
521e0703 RW |
1329 | (synopsis "Solving linear inverse models") |
1330 | (description | |
1331 | "This package provides functions that: | |
1332 | ||
1333 | @enumerate | |
1334 | @item find the minimum/maximum of a linear or quadratic function, | |
1335 | @item sample an underdetermined or overdetermined system, | |
1336 | @item solve a linear system Ax=B for the unknown x. | |
1337 | @end enumerate | |
1338 | ||
1339 | It includes banded and tridiagonal linear systems. The package calls Fortran | |
1340 | functions from LINPACK.") | |
1341 | ;; Any GPL version. | |
1342 | (license (list license:gpl2+ license:gpl3+)))) | |
6b4a9aec RW |
1343 | |
1344 | (define-public r-fitdistrplus | |
1345 | (package | |
1346 | (name "r-fitdistrplus") | |
1347 | (version "1.0-9") | |
1348 | (source | |
1349 | (origin | |
1350 | (method url-fetch) | |
1351 | (uri (cran-uri "fitdistrplus" version)) | |
1352 | (sha256 | |
1353 | (base32 | |
1354 | "18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6")))) | |
1355 | (build-system r-build-system) | |
1356 | (propagated-inputs | |
1357 | `(("r-mass" ,r-mass) | |
1358 | ("r-survival" ,r-survival))) | |
1359 | (home-page "http://riskassessment.r-forge.r-project.org") | |
1360 | (synopsis "Fitting a parametric distribution from data") | |
1361 | (description | |
1362 | "This package extends the @code{fitdistr} function of the MASS package | |
1363 | with several functions to help the fit of a parametric distribution to | |
1364 | non-censored or censored data. Censored data may contain left-censored, | |
1365 | right-censored and interval-censored values, with several lower and upper | |
1366 | bounds. In addition to @dfn{maximum likelihood estimation} (MLE), the package | |
1367 | provides moment matching (MME), quantile matching (QME) and maximum | |
1368 | goodness-of-fit estimation (MGE) methods (available only for non-censored | |
1369 | data). Weighted versions of MLE, MME and QME are available.") | |
1370 | (license license:gpl2+))) | |
8d220073 RW |
1371 | |
1372 | (define-public r-energy | |
1373 | (package | |
1374 | (name "r-energy") | |
9c112bee | 1375 | (version "1.7-5") |
8d220073 RW |
1376 | (source |
1377 | (origin | |
1378 | (method url-fetch) | |
1379 | (uri (cran-uri "energy" version)) | |
1380 | (sha256 | |
1381 | (base32 | |
9c112bee | 1382 | "15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4")))) |
8d220073 RW |
1383 | (build-system r-build-system) |
1384 | (propagated-inputs | |
1385 | `(("r-boot" ,r-boot) | |
1386 | ("r-rcpp" ,r-rcpp))) | |
e9960d8c | 1387 | (home-page "https://cran.r-project.org/web/packages/energy") |
8d220073 RW |
1388 | (synopsis "Multivariate inference via the energy of data") |
1389 | (description | |
1390 | "This package provides e-statistics (energy) tests and statistics for | |
1391 | multivariate and univariate inference, including distance correlation, | |
1392 | one-sample, two-sample, and multi-sample tests for comparing multivariate | |
1393 | distributions, are implemented. Measuring and testing multivariate | |
1394 | independence based on distance correlation, partial distance correlation, | |
1395 | multivariate goodness-of-fit tests, clustering based on energy distance, | |
1396 | testing for multivariate normality, distance components (disco) for | |
1397 | non-parametric analysis of structured data, and other energy | |
1398 | statistics/methods are implemented.") | |
1399 | (license license:gpl2+))) | |
abcb8494 RW |
1400 | |
1401 | (define-public r-suppdists | |
1402 | (package | |
1403 | (name "r-suppdists") | |
1404 | (version "1.1-9.4") | |
1405 | (source | |
1406 | (origin | |
1407 | (method url-fetch) | |
1408 | (uri (cran-uri "SuppDists" version)) | |
1409 | (sha256 | |
1410 | (base32 | |
1411 | "1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw")))) | |
1412 | (properties `((upstream-name . "SuppDists"))) | |
1413 | (build-system r-build-system) | |
e9960d8c | 1414 | (home-page "https://cran.r-project.org/web/packages/SuppDists") |
abcb8494 RW |
1415 | (synopsis "Supplementary distributions") |
1416 | (description | |
1417 | "This package provides ten distributions supplementing those built into | |
1418 | R. Inverse Gauss, Kruskal-Wallis, Kendall's Tau, Friedman's chi squared, | |
1419 | Spearman's rho, maximum F ratio, the Pearson product moment correlation | |
1420 | coefficient, Johnson distributions, normal scores and generalized | |
1421 | hypergeometric distributions. In addition two random number generators of | |
1422 | George Marsaglia are included.") | |
1423 | (license license:gpl2+))) | |
05e8a3ef RW |
1424 | |
1425 | (define-public r-ksamples | |
1426 | (package | |
1427 | (name "r-ksamples") | |
c152c6b3 | 1428 | (version "1.2-8") |
05e8a3ef RW |
1429 | (source |
1430 | (origin | |
1431 | (method url-fetch) | |
1432 | (uri (cran-uri "kSamples" version)) | |
1433 | (sha256 | |
1434 | (base32 | |
c152c6b3 | 1435 | "15d5q5vpp4wx5rk5kjxjdxpwc8mkq5sbdz8gi07iscrvhzb5rzfr")))) |
05e8a3ef RW |
1436 | (properties `((upstream-name . "kSamples"))) |
1437 | (build-system r-build-system) | |
1438 | (propagated-inputs | |
1439 | `(("r-suppdists" ,r-suppdists))) | |
e9960d8c | 1440 | (home-page "https://cran.r-project.org/web/packages/kSamples") |
05e8a3ef RW |
1441 | (synopsis "K-Sample rank tests and their combinations") |
1442 | (description | |
1443 | "This package provides tools to compares k samples using the | |
1444 | Anderson-Darling test, Kruskal-Wallis type tests with different rank score | |
1445 | criteria, Steel's multiple comparison test, and the Jonckheere-Terpstra (JT) | |
1446 | test. It computes asymptotic, simulated or (limited) exact P-values, all | |
1447 | valid under randomization, with or without ties, or conditionally under random | |
1448 | sampling from populations, given the observed tie pattern. Except for Steel's | |
1449 | test and the JT test it also combines these tests across several blocks of | |
1450 | samples.") | |
1451 | (license license:gpl2+))) | |
f97ce815 RW |
1452 | |
1453 | (define-public r-cvst | |
1454 | (package | |
1455 | (name "r-cvst") | |
b13b5674 | 1456 | (version "0.2-2") |
f97ce815 RW |
1457 | (source |
1458 | (origin | |
1459 | (method url-fetch) | |
1460 | (uri (cran-uri "CVST" version)) | |
1461 | (sha256 | |
1462 | (base32 | |
b13b5674 | 1463 | "05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5")))) |
f97ce815 RW |
1464 | (properties `((upstream-name . "CVST"))) |
1465 | (build-system r-build-system) | |
1466 | (propagated-inputs | |
1467 | `(("r-kernlab" ,r-kernlab) | |
1468 | ("r-matrix" ,r-matrix))) | |
e9960d8c | 1469 | (home-page "https://cran.r-project.org/web/packages/CVST") |
f97ce815 RW |
1470 | (synopsis "Fast cross-validation via sequential testing") |
1471 | (description | |
1472 | "This package implements the fast cross-validation via sequential | |
1473 | testing (CVST) procedure. CVST is an improved cross-validation procedure | |
1474 | which uses non-parametric testing coupled with sequential analysis to | |
1475 | determine the best parameter set on linearly increasing subsets of the data. | |
1476 | Additionally to the CVST the package contains an implementation of the | |
1477 | ordinary k-fold cross-validation with a flexible and powerful set of helper | |
1478 | objects and methods to handle the overall model selection process. The | |
1479 | implementations of the Cochran's Q test with permutations and the sequential | |
1480 | testing framework of Wald are generic and can therefore also be used in other | |
1481 | contexts.") | |
1482 | (license license:gpl2+))) | |
797e1dfb | 1483 | |
c5f033e0 RW |
1484 | (define-public r-squarem |
1485 | (package | |
1486 | (name "r-squarem") | |
1487 | (version "2017.10-1") | |
1488 | (source | |
1489 | (origin | |
1490 | (method url-fetch) | |
1491 | (uri (cran-uri "SQUAREM" version)) | |
1492 | (sha256 | |
1493 | (base32 | |
1494 | "10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv")))) | |
1495 | (properties `((upstream-name . "SQUAREM"))) | |
1496 | (build-system r-build-system) | |
1497 | (home-page "http://www.jhsph.edu/agingandhealth/People/Faculty_personal_pages/Varadhan.html") | |
1498 | (synopsis "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms") | |
1499 | (description | |
1500 | "This package provides algorithms for accelerating the convergence of | |
1501 | slow, monotone sequences from smooth, contraction mapping such as the EM | |
1502 | algorithm. It can be used to accelerate any smooth, linearly convergent | |
1503 | acceleration scheme. A tutorial style introduction to this package is | |
1504 | available in a vignette.") | |
1505 | (license license:gpl2+))) | |
1506 | ||
797e1dfb RW |
1507 | (define-public r-lava |
1508 | (package | |
1509 | (name "r-lava") | |
dc98bbca | 1510 | (version "1.6.3") |
797e1dfb RW |
1511 | (source |
1512 | (origin | |
1513 | (method url-fetch) | |
1514 | (uri (cran-uri "lava" version)) | |
1515 | (sha256 | |
1516 | (base32 | |
dc98bbca | 1517 | "0cayjspry3r2lcbvl77v5v52b2zarri3b8xsf87pw5a3jn9anxcf")))) |
797e1dfb RW |
1518 | (build-system r-build-system) |
1519 | (propagated-inputs | |
1520 | `(("r-numderiv" ,r-numderiv) | |
92e4534c | 1521 | ("r-squarem" ,r-squarem) |
797e1dfb RW |
1522 | ("r-survival" ,r-survival))) |
1523 | (home-page "https://github.com/kkholst/lava") | |
1524 | (synopsis "Latent variable models") | |
1525 | (description | |
1526 | "This package provides tools for the estimation and simulation of latent | |
1527 | variable models.") | |
1528 | (license license:gpl3))) | |
d26b7c1b RW |
1529 | |
1530 | (define-public r-drr | |
1531 | (package | |
1532 | (name "r-drr") | |
0f001b3c | 1533 | (version "0.0.3") |
d26b7c1b RW |
1534 | (source |
1535 | (origin | |
1536 | (method url-fetch) | |
1537 | (uri (cran-uri "DRR" version)) | |
1538 | (sha256 | |
1539 | (base32 | |
0f001b3c | 1540 | "1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl")))) |
d26b7c1b RW |
1541 | (properties `((upstream-name . "DRR"))) |
1542 | (build-system r-build-system) | |
1543 | (propagated-inputs | |
1544 | `(("r-cvst" ,r-cvst) | |
1545 | ("r-kernlab" ,r-kernlab) | |
1546 | ("r-matrix" ,r-matrix))) | |
e9960d8c | 1547 | (home-page "https://cran.r-project.org/web/packages/DRR") |
d26b7c1b RW |
1548 | (synopsis "Dimensionality reduction via regression") |
1549 | (description | |
1550 | "This package provides an implementation of dimensionality reduction via | |
1551 | regression using Kernel Ridge Regression.") | |
1552 | (license license:gpl3))) | |
9dd707f0 RW |
1553 | |
1554 | (define-public r-prodlim | |
1555 | (package | |
1556 | (name "r-prodlim") | |
9ee81a36 | 1557 | (version "2018.04.18") |
9dd707f0 RW |
1558 | (source |
1559 | (origin | |
1560 | (method url-fetch) | |
1561 | (uri (cran-uri "prodlim" version)) | |
1562 | (sha256 | |
1563 | (base32 | |
9ee81a36 | 1564 | "1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb")))) |
9dd707f0 RW |
1565 | (build-system r-build-system) |
1566 | (propagated-inputs | |
1567 | `(("r-kernsmooth" ,r-kernsmooth) | |
1568 | ("r-lava" ,r-lava) | |
1569 | ("r-rcpp" ,r-rcpp) | |
1570 | ("r-survival" ,r-survival))) | |
e9960d8c | 1571 | (home-page "https://cran.r-project.org/web/packages/prodlim") |
9dd707f0 RW |
1572 | (synopsis "Product-limit estimation for censored event history analysis") |
1573 | (description | |
1574 | "This package provides a fast and user-friendly implementation of | |
1575 | nonparametric estimators for censored event history (survival) analysis with | |
1576 | the Kaplan-Meier and Aalen-Johansen methods.") | |
1577 | (license license:gpl2+))) | |
b561f563 RW |
1578 | |
1579 | (define-public r-dimred | |
1580 | (package | |
1581 | (name "r-dimred") | |
1582 | (version "0.1.0") | |
1583 | (source | |
1584 | (origin | |
1585 | (method url-fetch) | |
1586 | (uri (cran-uri "dimRed" version)) | |
1587 | (sha256 | |
1588 | (base32 | |
1589 | "0fasca5fsbrxdwv30hch7vb9snb844l7l8p5fjf239dq45xfy37v")))) | |
1590 | (properties `((upstream-name . "dimRed"))) | |
1591 | (build-system r-build-system) | |
1592 | (propagated-inputs `(("r-drr" ,r-drr))) | |
1593 | (home-page "https://github.com/gdkrmr/dimRed") | |
1594 | (synopsis "Framework for dimensionality reduction") | |
1595 | (description | |
1596 | "This package provides a collection of dimensionality reduction | |
1597 | techniques from R packages and provides a common interface for calling the | |
1598 | methods.") | |
1599 | (license license:gpl3))) | |
1b663184 RW |
1600 | |
1601 | (define-public r-timedate | |
1602 | (package | |
1603 | (name "r-timedate") | |
51b7b0e3 | 1604 | (version "3043.102") |
1b663184 RW |
1605 | (source |
1606 | (origin | |
1607 | (method url-fetch) | |
1608 | (uri (cran-uri "timeDate" version)) | |
1609 | (sha256 | |
1610 | (base32 | |
51b7b0e3 | 1611 | "0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p")))) |
1b663184 RW |
1612 | (properties `((upstream-name . "timeDate"))) |
1613 | (build-system r-build-system) | |
1614 | (home-page "https://www.rmetrics.org") | |
1615 | (synopsis "Chronological and calendar objects") | |
1616 | (description | |
1617 | "This package provides an environment for teaching \"Financial | |
1618 | Engineering and Computational Finance\" and for managing chronological and | |
1619 | calendar objects.") | |
1620 | (license license:gpl2+))) | |
f57b883e | 1621 | |
ce4e81cb RW |
1622 | (define-public r-magic |
1623 | (package | |
1624 | (name "r-magic") | |
1625 | (version "1.5-8") | |
1626 | (source | |
1627 | (origin | |
1628 | (method url-fetch) | |
1629 | (uri (cran-uri "magic" version)) | |
1630 | (sha256 | |
1631 | (base32 | |
1632 | "083cgpp3v03li0h8597b3g21pd9lkbmn9pyssblnhc800mpc52vz")))) | |
1633 | (build-system r-build-system) | |
1634 | (propagated-inputs | |
1635 | `(("r-abind" ,r-abind))) | |
1636 | (home-page "https://github.com/RobinHankin/magic.git") | |
1637 | (synopsis "Create and investigate magic squares") | |
1638 | (description | |
1639 | "This package provides a collection of efficient, vectorized algorithms | |
1640 | for the creation and investigation of magic squares and hypercubes, including | |
1641 | a variety of functions for the manipulation and analysis of arbitrarily | |
1642 | dimensioned arrays.") | |
1643 | (license license:gpl2))) | |
1644 | ||
9604429d RW |
1645 | (define-public r-geometry |
1646 | (package | |
1647 | (name "r-geometry") | |
1648 | (version "0.3-6") | |
1649 | (source | |
1650 | (origin | |
1651 | (method url-fetch) | |
1652 | (uri (cran-uri "geometry" version)) | |
1653 | (sha256 | |
1654 | (base32 | |
1655 | "0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib")))) | |
1656 | (build-system r-build-system) | |
1657 | (propagated-inputs `(("r-magic" ,r-magic))) | |
1658 | (home-page "http://geometry.r-forge.r-project.org/") | |
1659 | (synopsis "Mesh generation and surface tesselation") | |
1660 | (description | |
1661 | "This package makes the qhull library available in R, in a similar manner | |
1662 | as in Octave. Qhull computes convex hulls, Delaunay triangulations, halfspace | |
1663 | intersections about a point, Voronoi diagrams, furthest-site Delaunay | |
1664 | triangulations, and furthest-site Voronoi diagrams. It runs in 2-d, 3-d, 4-d, | |
1665 | and higher dimensions. It implements the Quickhull algorithm for computing | |
1666 | the convex hull. Qhull does not support constrained Delaunay triangulations, | |
1667 | or mesh generation of non-convex objects, but the package does include some R | |
1668 | functions that allow for this. Currently the package only gives access to | |
1669 | Delaunay triangulation and convex hull computation.") | |
1670 | ;; The Qhull sources are included and are distributed under a custom | |
1671 | ;; non-copyleft license. The R sources are released under GPL version 2. | |
1672 | (license (list license:gpl2 | |
1673 | (license:non-copyleft "http://www.qhull.org/COPYING.txt"))))) | |
1674 | ||
f57b883e RW |
1675 | (define-public r-ddalpha |
1676 | (package | |
1677 | (name "r-ddalpha") | |
7cd2fa95 | 1678 | (version "1.3.4") |
f57b883e RW |
1679 | (source |
1680 | (origin | |
1681 | (method url-fetch) | |
1682 | (uri (cran-uri "ddalpha" version)) | |
1683 | (sha256 | |
1684 | (base32 | |
7cd2fa95 | 1685 | "16cn0bhbaz9l9k4y79sv2d4f7pvs7dyka273y89igs5jvr99kfj1")))) |
f57b883e RW |
1686 | (build-system r-build-system) |
1687 | (propagated-inputs | |
1688 | `(("r-bh" ,r-bh) | |
1689 | ("r-class" ,r-class) | |
4f184233 | 1690 | ("r-geometry" ,r-geometry) |
f57b883e RW |
1691 | ("r-mass" ,r-mass) |
1692 | ("r-rcpp" ,r-rcpp) | |
e90456b9 RW |
1693 | ("r-robustbase" ,r-robustbase) |
1694 | ("r-sfsmisc" ,r-sfsmisc))) | |
1695 | (native-inputs | |
1696 | `(("gfortran" ,gfortran))) | |
e9960d8c | 1697 | (home-page "https://cran.r-project.org/web/packages/ddalpha") |
f57b883e RW |
1698 | (synopsis "Depth-Based classification and calculation of data depth") |
1699 | (description | |
1700 | "This package contains procedures for depth-based supervised learning, | |
1701 | which are entirely non-parametric, in particular the DDalpha-procedure (Lange, | |
1702 | Mosler and Mozharovskyi, 2014). The training data sample is transformed by a | |
1703 | statistical depth function to a compact low-dimensional space, where the final | |
1704 | classification is done. It also offers an extension to functional data and | |
1705 | routines for calculating certain notions of statistical depth functions. 50 | |
1706 | multivariate and 5 functional classification problems are included.") | |
1707 | (license license:gpl2))) | |
5a87093f RW |
1708 | |
1709 | (define-public r-gower | |
1710 | (package | |
1711 | (name "r-gower") | |
1712 | (version "0.1.2") | |
1713 | (source | |
1714 | (origin | |
1715 | (method url-fetch) | |
1716 | (uri (cran-uri "gower" version)) | |
1717 | (sha256 | |
1718 | (base32 | |
1719 | "1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb")))) | |
1720 | (build-system r-build-system) | |
1721 | (native-inputs | |
1722 | `(("r-knitr" ,r-knitr))) | |
1723 | (home-page "https://github.com/markvanderloo/gower") | |
1724 | (synopsis "Gower's distance") | |
1725 | (description | |
1726 | "This package provides tools to compute Gower's distance (or similarity) | |
1727 | coefficient between records, and to compute the top-n matches between records. | |
1728 | Core algorithms are executed in parallel on systems supporting OpenMP.") | |
1729 | (license license:gpl3))) | |
649cf27c RW |
1730 | |
1731 | (define-public r-rcpproll | |
1732 | (package | |
1733 | (name "r-rcpproll") | |
d0396c8e | 1734 | (version "0.3.0") |
649cf27c RW |
1735 | (source |
1736 | (origin | |
1737 | (method url-fetch) | |
1738 | (uri (cran-uri "RcppRoll" version)) | |
1739 | (sha256 | |
1740 | (base32 | |
d0396c8e | 1741 | "0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb")))) |
649cf27c RW |
1742 | (properties `((upstream-name . "RcppRoll"))) |
1743 | (build-system r-build-system) | |
1744 | (propagated-inputs | |
1745 | `(("r-rcpp" ,r-rcpp))) | |
e9960d8c | 1746 | (home-page "https://cran.r-project.org/web/packages/RcppRoll") |
649cf27c RW |
1747 | (synopsis "Efficient rolling and windowed operations") |
1748 | (description | |
1749 | "This package provides fast and efficient routines for common rolling / | |
1750 | windowed operations. Routines for the efficient computation of windowed mean, | |
1751 | median, sum, product, minimum, maximum, standard deviation and variance are | |
1752 | provided.") | |
1753 | (license license:gpl2+))) | |
6c3d42d6 RW |
1754 | |
1755 | (define-public r-ipred | |
1756 | (package | |
1757 | (name "r-ipred") | |
2d2b95d1 | 1758 | (version "0.9-7") |
6c3d42d6 RW |
1759 | (source |
1760 | (origin | |
1761 | (method url-fetch) | |
1762 | (uri (cran-uri "ipred" version)) | |
1763 | (sha256 | |
1764 | (base32 | |
2d2b95d1 | 1765 | "0q53cqs46501wsd4cmfsmr78l8nv1hkbamk9m0ns5qy02df5r254")))) |
6c3d42d6 RW |
1766 | (build-system r-build-system) |
1767 | (propagated-inputs | |
1768 | `(("r-class" ,r-class) | |
1769 | ("r-mass" ,r-mass) | |
1770 | ("r-nnet" ,r-nnet) | |
1771 | ("r-prodlim" ,r-prodlim) | |
1772 | ("r-rpart" ,r-rpart) | |
1773 | ("r-survival" ,r-survival))) | |
e9960d8c | 1774 | (home-page "https://cran.r-project.org/web/packages/ipred") |
6c3d42d6 RW |
1775 | (synopsis "Improved predictors") |
1776 | (description | |
1777 | "This package provides improved predictive models by indirect | |
1778 | classification and bagging for classification, regression and survival | |
1779 | problems as well as resampling based estimators of prediction error.") | |
1780 | (license license:gpl2+))) | |
ba4527ab | 1781 | |
cdc129dc RW |
1782 | (define-public r-psych |
1783 | (package | |
1784 | (name "r-psych") | |
cfa6cc4d | 1785 | (version "1.8.4") |
cdc129dc RW |
1786 | (source |
1787 | (origin | |
1788 | (method url-fetch) | |
1789 | (uri (cran-uri "psych" version)) | |
1790 | (sha256 | |
1791 | (base32 | |
cfa6cc4d | 1792 | "1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf")))) |
cdc129dc RW |
1793 | (build-system r-build-system) |
1794 | (propagated-inputs | |
1795 | `(("r-foreign" ,r-foreign) | |
1796 | ("r-lattice" ,r-lattice) | |
1797 | ("r-mnormt" ,r-mnormt) | |
1798 | ("r-nlme" ,r-nlme))) | |
e9960d8c | 1799 | (home-page "https://cran.r-project.org/web/packages/psych/") |
cdc129dc RW |
1800 | (synopsis "Procedures for psychological, psychometric, and personality research") |
1801 | (description | |
1802 | "This package provides a general purpose toolbox for personality, | |
1803 | psychometric theory and experimental psychology. Functions are primarily for | |
1804 | multivariate analysis and scale construction using factor analysis, principal | |
1805 | component analysis, cluster analysis and reliability analysis, although others | |
1806 | provide basic descriptive statistics. Item Response Theory is done using | |
1807 | factor analysis of tetrachoric and polychoric correlations. Functions for | |
1808 | analyzing data at multiple levels include within and between group statistics, | |
1809 | including correlations and factor analysis. Functions for simulating and | |
1810 | testing particular item and test structures are included. Several functions | |
1811 | serve as a useful front end for structural equation modeling. Graphical | |
1812 | displays of path diagrams, factor analysis and structural equation models are | |
1813 | created using basic graphics.") | |
1814 | (license license:gpl2+))) | |
1815 | ||
6c8c8c6b RW |
1816 | (define-public r-broom |
1817 | (package | |
1818 | (name "r-broom") | |
45c156bf | 1819 | (version "0.5.0") |
6c8c8c6b RW |
1820 | (source |
1821 | (origin | |
1822 | (method url-fetch) | |
1823 | (uri (cran-uri "broom" version)) | |
1824 | (sha256 | |
1825 | (base32 | |
45c156bf | 1826 | "1r3831vq0fd5sh5841xr844sghg88z7ws91hg4jgnzbbkxfjp4ag")))) |
6c8c8c6b RW |
1827 | (build-system r-build-system) |
1828 | (propagated-inputs | |
45c156bf RW |
1829 | `(("r-backports" ,r-backports) |
1830 | ("r-dplyr" ,r-dplyr) | |
6c8c8c6b | 1831 | ("r-nlme" ,r-nlme) |
45c156bf | 1832 | ("r-purrr" ,r-purrr) |
6c8c8c6b RW |
1833 | ("r-reshape2" ,r-reshape2) |
1834 | ("r-stringr" ,r-stringr) | |
45c156bf | 1835 | ("r-tibble" ,r-tibble) |
6c8c8c6b | 1836 | ("r-tidyr" ,r-tidyr))) |
6e19d50e | 1837 | (home-page "https://github.com/tidyverse/broom") |
6c8c8c6b RW |
1838 | (synopsis "Convert statistical analysis objects into tidy data frames") |
1839 | (description | |
1840 | "This package provides tools to convert statistical analysis objects from | |
1841 | R into tidy data frames, so that they can more easily be combined, reshaped | |
1842 | and otherwise processed with tools like @code{dplyr}, @code{tidyr} and | |
1843 | @code{ggplot2}. The package provides three S3 generics: @code{tidy}, which | |
1844 | summarizes a model's statistical findings such as coefficients of a | |
1845 | regression; @code{augment}, which adds columns to the original data such as | |
1846 | predictions, residuals and cluster assignments; and @code{glance}, which | |
1847 | provides a one-row summary of model-level statistics.") | |
1848 | (license license:expat))) | |
1849 | ||
ba4527ab RW |
1850 | (define-public r-recipes |
1851 | (package | |
1852 | (name "r-recipes") | |
3321234c | 1853 | (version "0.1.3") |
ba4527ab RW |
1854 | (source |
1855 | (origin | |
1856 | (method url-fetch) | |
1857 | (uri (cran-uri "recipes" version)) | |
1858 | (sha256 | |
1859 | (base32 | |
3321234c | 1860 | "1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy")))) |
ba4527ab RW |
1861 | (build-system r-build-system) |
1862 | (propagated-inputs | |
18a11c6d RW |
1863 | `(("r-broom" ,r-broom) |
1864 | ("r-ddalpha" ,r-ddalpha) | |
ba4527ab RW |
1865 | ("r-dimred" ,r-dimred) |
1866 | ("r-dplyr" ,r-dplyr) | |
1867 | ("r-gower" ,r-gower) | |
1868 | ("r-ipred" ,r-ipred) | |
1869 | ("r-lubridate" ,r-lubridate) | |
1870 | ("r-magrittr" ,r-magrittr) | |
18a11c6d | 1871 | ("r-matrix" ,r-matrix) |
3321234c | 1872 | ("r-pls" ,r-pls) |
ba4527ab RW |
1873 | ("r-purrr" ,r-purrr) |
1874 | ("r-rcpproll" ,r-rcpproll) | |
1875 | ("r-rlang" ,r-rlang) | |
1876 | ("r-tibble" ,r-tibble) | |
1877 | ("r-tidyselect" ,r-tidyselect) | |
1878 | ("r-timedate" ,r-timedate))) | |
1879 | (home-page "https://github.com/topepo/recipes") | |
1880 | (synopsis "Preprocessing tools to create design matrices") | |
1881 | (description | |
1882 | "Recipes is an extensible framework to create and preprocess design | |
1883 | matrices. Recipes consist of one or more data manipulation and analysis | |
1884 | \"steps\". Statistical parameters for the steps can be estimated from an | |
1885 | initial data set and then applied to other data sets. The resulting design | |
1886 | matrices can then be used as inputs into statistical or machine learning | |
1887 | models.") | |
1888 | (license license:gpl2))) | |
1ab867be RW |
1889 | |
1890 | (define-public r-pdist | |
1891 | (package | |
1892 | (name "r-pdist") | |
1893 | (version "1.2") | |
1894 | (source | |
1895 | (origin | |
1896 | (method url-fetch) | |
1897 | (uri (cran-uri "pdist" version)) | |
1898 | (sha256 | |
1899 | (base32 | |
1900 | "18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd")))) | |
1901 | (build-system r-build-system) | |
1902 | (home-page "https://github.com/jeffwong/pdist") | |
1903 | (synopsis "Partitioned distance function") | |
1904 | (description | |
1905 | "Pdist computes the euclidean distance between rows of a matrix X and | |
1906 | rows of another matrix Y. Previously, this could be done by binding the two | |
1907 | matrices together and calling @code{dist}, but this creates unnecessary | |
1908 | computation by computing the distances between a row of X and another row of | |
1909 | X, and likewise for Y. Pdist strictly computes distances across the two | |
1910 | matrices, not within the same matrix, making computations significantly faster | |
1911 | for certain use cases.") | |
1912 | (license license:gpl3+))) | |
81e0b625 RW |
1913 | |
1914 | (define-public r-ggrepel | |
1915 | (package | |
1916 | (name "r-ggrepel") | |
0759d87d | 1917 | (version "0.8.0") |
81e0b625 RW |
1918 | (source |
1919 | (origin | |
1920 | (method url-fetch) | |
1921 | (uri (cran-uri "ggrepel" version)) | |
1922 | (sha256 | |
1923 | (base32 | |
0759d87d | 1924 | "1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3")))) |
81e0b625 RW |
1925 | (build-system r-build-system) |
1926 | (propagated-inputs | |
1927 | `(("r-ggplot2" ,r-ggplot2) | |
1928 | ("r-rcpp" ,r-rcpp) | |
1929 | ("r-scales" ,r-scales))) | |
1930 | (home-page "http://github.com/slowkow/ggrepel") | |
1931 | (synopsis "Repulsive text and label geometries for ggplot2") | |
1932 | (description | |
1933 | "This package provides text and label geometries for ggplot2 that help to | |
1934 | avoid overlapping text labels. Labels repel away from each other and away | |
1935 | from the data points.") | |
1936 | (license license:gpl3))) | |
6b968c4c RW |
1937 | |
1938 | (define-public r-corrplot | |
1939 | (package | |
1940 | (name "r-corrplot") | |
1941 | (version "0.84") | |
1942 | (source | |
1943 | (origin | |
1944 | (method url-fetch) | |
1945 | (uri (cran-uri "corrplot" version)) | |
1946 | (sha256 | |
1947 | (base32 | |
1948 | "1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd")))) | |
1949 | (build-system r-build-system) | |
1950 | (home-page "https://github.com/taiyun/corrplot") | |
1951 | (synopsis "Visualization of a correlation matrix") | |
1952 | (description | |
1953 | "This package provides a graphical display of a correlation matrix or | |
1954 | general matrix. It also contains some algorithms to do matrix reordering. In | |
1955 | addition, corrplot is good at details, including choosing color, text labels, | |
1956 | color labels, layout, etc.") | |
1957 | ;; Any version of the GPL | |
1958 | (license license:gpl2+))) | |
a40a04fd RW |
1959 | |
1960 | (define-public r-stringdist | |
1961 | (package | |
1962 | (name "r-stringdist") | |
2bce7795 | 1963 | (version "0.9.5.1") |
a40a04fd RW |
1964 | (source |
1965 | (origin | |
1966 | (method url-fetch) | |
1967 | (uri (cran-uri "stringdist" version)) | |
1968 | (sha256 | |
1969 | (base32 | |
2bce7795 | 1970 | "0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa")))) |
a40a04fd RW |
1971 | (build-system r-build-system) |
1972 | (home-page "https://github.com/markvanderloo/stringdist") | |
1973 | (synopsis "Approximate string matching and string distance functions") | |
1974 | (description | |
1975 | "This package implements an approximate string matching version of R's | |
1976 | native @code{match} function. It can calculate various string distances based | |
1977 | on edits (Damerau-Levenshtein, Hamming, Levenshtein, optimal sting alignment), | |
1978 | qgrams (q- gram, cosine, jaccard distance) or heuristic metrics (Jaro, | |
1979 | Jaro-Winkler). An implementation of soundex is provided as well. Distances | |
1980 | can be computed between character vectors while taking proper care of encoding | |
1981 | or between integer vectors representing generic sequences.") | |
1982 | (license license:gpl3+))) | |
10e16fa9 | 1983 | |
dc668352 RW |
1984 | (define-public r-ucminf |
1985 | (package | |
1986 | (name "r-ucminf") | |
1987 | (version "1.1-4") | |
1988 | (source | |
1989 | (origin | |
1990 | (method url-fetch) | |
1991 | (uri (cran-uri "ucminf" version)) | |
1992 | (sha256 | |
1993 | (base32 | |
1994 | "01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2")))) | |
1995 | (build-system r-build-system) | |
1996 | (native-inputs `(("gfortran" ,gfortran))) | |
1997 | (home-page "https://cran.r-project.org/web/packages/ucminf/") | |
1998 | (synopsis "General-purpose unconstrained non-linear optimization") | |
1999 | (description | |
2000 | "This package provides an implementation of an algorithm for | |
2001 | general-purpose unconstrained non-linear optimization. The algorithm is of | |
2002 | quasi-Newton type with BFGS updating of the inverse Hessian and soft line | |
2003 | search with a trust region type monitoring of the input to the line search | |
2004 | algorithm. The interface of @code{ucminf} is designed for easy interchange | |
2005 | with the package @code{optim}.") | |
2006 | (license license:gpl2+))) | |
2007 | ||
b8f6e2f8 RW |
2008 | (define-public r-ordinal |
2009 | (package | |
2010 | (name "r-ordinal") | |
2011 | (version "2018.8-25") | |
2012 | (source | |
2013 | (origin | |
2014 | (method url-fetch) | |
2015 | (uri (cran-uri "ordinal" version)) | |
2016 | (sha256 | |
2017 | (base32 | |
2018 | "03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h")))) | |
2019 | (build-system r-build-system) | |
2020 | (propagated-inputs | |
2021 | `(("r-mass" ,r-mass) | |
2022 | ("r-matrix" ,r-matrix) | |
2023 | ("r-numderiv" ,r-numderiv) | |
2024 | ("r-ucminf" ,r-ucminf))) | |
2025 | (home-page "https://github.com/runehaubo/ordinal") | |
2026 | (synopsis "Regression models for ordinal data") | |
2027 | (description | |
2028 | "This package provides an implementation of cumulative link (mixed) | |
2029 | models also known as ordered regression models, proportional odds models, | |
2030 | proportional hazards models for grouped survival times and ordered models. | |
2031 | Estimation is via maximum likelihood and mixed models are fitted with the | |
2032 | Laplace approximation and adaptive Gauss-Hermite quadrature.") | |
2033 | (license license:gpl2+))) | |
2034 | ||
fe1495e3 RW |
2035 | (define-public r-jomo |
2036 | (package | |
2037 | (name "r-jomo") | |
e7630cc9 | 2038 | (version "2.6-4") |
fe1495e3 RW |
2039 | (source |
2040 | (origin | |
2041 | (method url-fetch) | |
2042 | (uri (cran-uri "jomo" version)) | |
2043 | (sha256 | |
2044 | (base32 | |
e7630cc9 | 2045 | "05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x")))) |
fe1495e3 RW |
2046 | (build-system r-build-system) |
2047 | (propagated-inputs | |
2048 | `(("r-lme4" ,r-lme4) | |
e7630cc9 | 2049 | ("r-ordinal" ,r-ordinal) |
fe1495e3 RW |
2050 | ("r-survival" ,r-survival))) |
2051 | (home-page "https://cran.r-project.org/web/packages/jomo/") | |
2052 | (synopsis "Multilevel Joint Modelling Multiple Imputation") | |
2053 | (description | |
2054 | "Similarly to Schafer's package pan, jomo is a package for multilevel | |
2055 | joint modelling multiple imputation @url{Carpenter and Kenward (2013), | |
2056 | http://doi.org/10.1002/9781119942283}. Novel aspects of jomo are the | |
2057 | possibility of handling binary and categorical data through latent normal | |
2058 | variables, the option to use cluster-specific covariance matrices and to | |
2059 | impute compatibly with the substantive model.") | |
2060 | (license license:gpl2))) | |
2061 | ||
03e718fb RW |
2062 | (define-public r-pan |
2063 | (package | |
2064 | (name "r-pan") | |
a7265593 | 2065 | (version "1.6") |
03e718fb RW |
2066 | (source |
2067 | (origin | |
2068 | (method url-fetch) | |
2069 | (uri (cran-uri "pan" version)) | |
2070 | (sha256 | |
2071 | (base32 | |
a7265593 | 2072 | "1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d")))) |
03e718fb RW |
2073 | (build-system r-build-system) |
2074 | (native-inputs `(("gfortran" ,gfortran))) | |
2075 | (home-page "https://cran.r-project.org/web/packages/pan/") | |
2076 | (synopsis "Multiple imputation for multivariate panel or clustered data") | |
2077 | (description | |
2078 | "This package implements multiple imputation for multivariate panel or | |
2079 | clustered data.") | |
2080 | (license license:gpl3))) | |
2081 | ||
84e7147a RW |
2082 | (define-public r-mitml |
2083 | (package | |
2084 | (name "r-mitml") | |
632cefda | 2085 | (version "0.3-6") |
84e7147a RW |
2086 | (source |
2087 | (origin | |
2088 | (method url-fetch) | |
2089 | (uri (cran-uri "mitml" version)) | |
2090 | (sha256 | |
2091 | (base32 | |
632cefda | 2092 | "1pkqv4qazih3byws5z6629pp232n8ra56lip7502727b0b4bsndw")))) |
84e7147a RW |
2093 | (build-system r-build-system) |
2094 | (propagated-inputs | |
2095 | `(("r-haven" ,r-haven) | |
2096 | ("r-jomo" ,r-jomo) | |
2097 | ("r-pan" ,r-pan))) | |
2098 | (home-page "https://cran.r-project.org/web/packages/mitml/") | |
2099 | (synopsis "Tools for multiple imputation in multilevel modeling") | |
2100 | (description | |
2101 | "This package provides tools for multiple imputation of missing data in | |
2102 | multilevel modeling. It includes a user-friendly interface to the packages | |
2103 | pan and jomo, and several functions for visualization, data management and the | |
2104 | analysis of multiply imputed data sets.") | |
2105 | (license license:gpl2+))) | |
2106 | ||
10e16fa9 RW |
2107 | (define-public r-mice |
2108 | (package | |
2109 | (name "r-mice") | |
1b3b2a72 | 2110 | (version "3.3.0") |
10e16fa9 RW |
2111 | (source |
2112 | (origin | |
2113 | (method url-fetch) | |
2114 | (uri (cran-uri "mice" version)) | |
2115 | (sha256 | |
2116 | (base32 | |
1b3b2a72 | 2117 | "1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx")))) |
10e16fa9 RW |
2118 | (build-system r-build-system) |
2119 | (propagated-inputs | |
aea3be25 RW |
2120 | `(("r-broom" ,r-broom) |
2121 | ("r-dplyr" ,r-dplyr) | |
2122 | ("r-lattice" ,r-lattice) | |
10e16fa9 | 2123 | ("r-mass" ,r-mass) |
aea3be25 | 2124 | ("r-mitml" ,r-mitml) |
10e16fa9 RW |
2125 | ("r-nnet" ,r-nnet) |
2126 | ("r-rcpp" ,r-rcpp) | |
aea3be25 | 2127 | ("r-rlang" ,r-rlang) |
10e16fa9 RW |
2128 | ("r-rpart" ,r-rpart) |
2129 | ("r-survival" ,r-survival))) | |
2130 | (home-page "https://cran.r-project.org/web/packages/mice/") | |
2131 | (synopsis "Multivariate imputation by chained equations") | |
2132 | (description | |
2133 | "Multiple imputation using @dfn{Fully Conditional Specification} (FCS) | |
2134 | implemented by the MICE algorithm as described in @url{Van Buuren and | |
2135 | Groothuis-Oudshoorn (2011), http://doi.org/10.18637/jss.v045.i03}. Each | |
2136 | variable has its own imputation model. Built-in imputation models are | |
2137 | provided for continuous data (predictive mean matching, normal), binary | |
2138 | data (logistic regression), unordered categorical data (polytomous logistic | |
2139 | regression) and ordered categorical data (proportional odds). MICE can also | |
2140 | impute continuous two-level data (normal model, pan, second-level variables). | |
2141 | Passive imputation can be used to maintain consistency between variables. | |
2142 | Various diagnostic plots are available to inspect the quality of the | |
2143 | imputations.") | |
2144 | ;; Any of these two versions. | |
2145 | (license (list license:gpl2 license:gpl3)))) | |
7fd5f60b | 2146 | |
02cdb45f RW |
2147 | (define-public r-truncnorm |
2148 | (package | |
2149 | (name "r-truncnorm") | |
9d6f3925 | 2150 | (version "1.0-8") |
02cdb45f RW |
2151 | (source |
2152 | (origin | |
2153 | (method url-fetch) | |
2154 | (uri (cran-uri "truncnorm" version)) | |
2155 | (sha256 | |
2156 | (base32 | |
9d6f3925 | 2157 | "0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9")))) |
02cdb45f | 2158 | (build-system r-build-system) |
e9960d8c | 2159 | (home-page "https://cran.r-project.org/web/packages/truncnorm/") |
02cdb45f RW |
2160 | (synopsis "Truncated normal distribution") |
2161 | (description "This package provides functions for the truncated normal | |
2162 | distribution with mean equal to @code{mean} and standard deviation equal to | |
2163 | @code{sd}. It includes density, distribution, quantile, and expected value | |
2164 | functions, as well as a random generation function.") | |
2165 | (license license:gpl2))) | |
2166 | ||
cb8b4c11 RW |
2167 | (define-public r-rsolnp |
2168 | (package | |
2169 | (name "r-rsolnp") | |
2170 | (version "1.16") | |
2171 | (source | |
2172 | (origin | |
2173 | (method url-fetch) | |
2174 | (uri (cran-uri "Rsolnp" version)) | |
2175 | (sha256 | |
2176 | (base32 | |
2177 | "0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii")))) | |
2178 | (properties `((upstream-name . "Rsolnp"))) | |
2179 | (build-system r-build-system) | |
2180 | (propagated-inputs | |
2181 | `(("r-truncnorm" ,r-truncnorm))) | |
e9960d8c | 2182 | (home-page "https://cran.r-project.org/web/packages/Rsolnp/") |
cb8b4c11 RW |
2183 | (synopsis "General non-linear optimization") |
2184 | (description "The Rsolnp package implements a general non-linear augmented | |
2185 | Lagrange multiplier method solver, a @dfn{sequential quadratic | |
2186 | programming} (SQP) based solver).") | |
2187 | ;; Any version of the GPL. | |
2188 | (license license:gpl2+))) | |
2189 | ||
7fd5f60b RW |
2190 | (define-public r-hardyweinberg |
2191 | (package | |
2192 | (name "r-hardyweinberg") | |
da5cca36 | 2193 | (version "1.6.1") |
7fd5f60b RW |
2194 | (source |
2195 | (origin | |
2196 | (method url-fetch) | |
2197 | (uri (cran-uri "HardyWeinberg" version)) | |
2198 | (sha256 | |
2199 | (base32 | |
da5cca36 | 2200 | "16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz")))) |
7fd5f60b RW |
2201 | (properties `((upstream-name . "HardyWeinberg"))) |
2202 | (build-system r-build-system) | |
2203 | (propagated-inputs | |
2204 | `(("r-mice" ,r-mice) | |
d0394944 RW |
2205 | ("r-rcpp" ,r-rcpp) |
2206 | ("r-rsolnp" ,r-rsolnp))) | |
7fd5f60b RW |
2207 | (home-page "https://cran.r-project.org/package=HardyWeinberg") |
2208 | (synopsis "Statistical tests and graphics for Hardy-Weinberg equilibrium") | |
2209 | (description | |
2210 | "This package contains tools for exploring Hardy-Weinberg equilibrium for | |
2211 | diallelic genetic marker data. All classical tests (chi-square, exact, | |
2212 | likelihood-ratio and permutation tests) for Hardy-Weinberg equilibrium are | |
2213 | included in the package, as well as functions for power computation and for | |
2214 | the simulation of marker data under equilibrium and disequilibrium. Routines | |
2215 | for dealing with markers on the X-chromosome are included. Functions for | |
2216 | testing equilibrium in the presence of missing data by using multiple | |
2217 | imputation are also provided. Implements several graphics for exploring the | |
2218 | equilibrium status of a large set of diallelic markers: ternary plots with | |
2219 | acceptance regions, log-ratio plots and Q-Q plots.") | |
2220 | (license license:gpl2+))) | |
3a22732c RW |
2221 | |
2222 | (define-public r-sm | |
2223 | (package | |
2224 | (name "r-sm") | |
1e31e8bc | 2225 | (version "2.2-5.5") |
3a22732c RW |
2226 | (source |
2227 | (origin | |
2228 | (method url-fetch) | |
2229 | (uri (cran-uri "sm" version)) | |
2230 | (sha256 | |
2231 | (base32 | |
1e31e8bc | 2232 | "1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3")))) |
3a22732c RW |
2233 | (build-system r-build-system) |
2234 | (native-inputs `(("gfortran" ,gfortran))) | |
2235 | (home-page "http://www.stats.gla.ac.uk/~adrian/sm/") | |
2236 | (synopsis "Smoothing methods for nonparametric regression and density estimation") | |
2237 | (description | |
2238 | "This is software accompanying the book 'Applied Smoothing Techniques for | |
2239 | Data Analysis---The Kernel Approach with S-Plus Illustrations', Oxford | |
2240 | University Press. It provides smoothing methods for nonparametric regression | |
2241 | and density estimation") | |
2242 | (license license:gpl2+))) | |
9232cac4 | 2243 | |
6174db2b RJ |
2244 | (define-public r-venndiagram |
2245 | (package | |
2246 | (name "r-venndiagram") | |
2247 | (version "1.6.20") | |
2248 | (source (origin | |
2249 | (method url-fetch) | |
2250 | (uri (cran-uri "VennDiagram" version)) | |
2251 | (sha256 | |
2252 | (base32 | |
2253 | "1ic1jaxzw98si2p4n1fl4n3myhd7fpw0njb634cwhviwybzv6775")))) | |
2254 | (properties `((upstream-name . "VennDiagram"))) | |
2255 | (build-system r-build-system) | |
2256 | (propagated-inputs | |
2257 | `(("r-futile-logger" ,r-futile-logger))) | |
2258 | (home-page "https://cran.r-project.org/web/packages/VennDiagram/") | |
2259 | (synopsis "Generate High-Resolution Venn and Euler Plots") | |
2260 | (description | |
2261 | "This package provides a set of functions to generate high-resolution | |
2262 | Venn and Euler plots. It includes handling for several special cases, | |
2263 | including two-case scaling, and extensive customization of plot shape and | |
2264 | structure.") | |
2265 | (license license:gpl2+))) | |
2266 | ||
9232cac4 RW |
2267 | (define-public r-vioplot |
2268 | (package | |
2269 | (name "r-vioplot") | |
2270 | (version "0.2") | |
2271 | (source | |
2272 | (origin | |
2273 | (method url-fetch) | |
2274 | (uri (cran-uri "vioplot" version)) | |
2275 | (sha256 | |
2276 | (base32 | |
2277 | "16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0")))) | |
2278 | (build-system r-build-system) | |
2279 | (propagated-inputs `(("r-sm" ,r-sm))) | |
2280 | (home-page "http://wsopuppenkiste.wiso.uni-goettingen.de/~dadler") | |
2281 | (synopsis "Violin plot") | |
2282 | (description | |
2283 | "This package provides a violin plot, which is a combination of a box | |
2284 | plot and a kernel density plot.") | |
2285 | (license license:bsd-3))) | |
7b0569c0 RW |
2286 | |
2287 | (define-public r-rsofia | |
2288 | (package | |
2289 | (name "r-rsofia") | |
2290 | (version "1.1") | |
2291 | (source (origin | |
2292 | (method url-fetch) | |
2293 | ;; This package has been removed from CRAN, so we can | |
2294 | ;; only fetch it from the archives. | |
2295 | (uri (string-append "https://cran.r-project.org/src/" | |
2296 | "contrib/Archive/RSofia/RSofia_" | |
2297 | version ".tar.gz")) | |
2298 | (sha256 | |
2299 | (base32 | |
2300 | "0q931y9rcf6slb0s2lsxhgqrzy4yqwh8hb1124nxg0bjbxvjbihn")))) | |
2301 | (properties `((upstream-name . "RSofia"))) | |
2302 | (build-system r-build-system) | |
2303 | (propagated-inputs | |
2304 | `(("r-rcpp" ,r-rcpp))) | |
2305 | (home-page "https://cran.r-project.org/src/contrib/Archive/RSofia") | |
2306 | (synopsis "Port of sofia-ml to R") | |
2307 | (description "This package is a port of sofia-ml to R. Sofia-ml is a | |
2308 | suite of fast incremental algorithms for machine learning that can be used for | |
2309 | training models for classification or ranking.") | |
2310 | (license license:asl2.0))) | |
738dda83 | 2311 | |
3699383e RW |
2312 | (define-public r-xts |
2313 | (package | |
2314 | (name "r-xts") | |
69bf449b | 2315 | (version "0.11-0") |
3699383e RW |
2316 | (source |
2317 | (origin | |
2318 | (method url-fetch) | |
2319 | (uri (cran-uri "xts" version)) | |
2320 | (sha256 | |
2321 | (base32 | |
69bf449b | 2322 | "1v50yn4bsjzdyk7r90isn6dxmpkapillrhpx3gqsshd180vwzqk9")))) |
3699383e RW |
2323 | (build-system r-build-system) |
2324 | (propagated-inputs `(("r-zoo" ,r-zoo))) | |
3699383e RW |
2325 | (home-page "https://github.com/joshuaulrich/xts") |
2326 | (synopsis "Extensible time series") | |
2327 | (description | |
2328 | "This package provides for uniform handling of R's different time-based | |
2329 | data classes by extending @code{zoo}, maximizing native format information | |
2330 | preservation and allowing for user-level customization and extension, while | |
2331 | simplifying cross-class interoperability.") | |
2332 | (license license:gpl2+))) | |
b72b42cf RW |
2333 | |
2334 | (define-public r-performanceanalytics | |
2335 | (package | |
2336 | (name "r-performanceanalytics") | |
081d143d | 2337 | (version "1.5.2") |
b72b42cf RW |
2338 | (source |
2339 | (origin | |
2340 | (method url-fetch) | |
2341 | (uri (cran-uri "PerformanceAnalytics" version)) | |
2342 | (sha256 | |
2343 | (base32 | |
081d143d | 2344 | "01bgm57z079g6r505w3bj293zkbd49fwa8sg55z87vizwavipml6")))) |
b72b42cf RW |
2345 | (properties |
2346 | `((upstream-name . "PerformanceAnalytics"))) | |
2347 | (build-system r-build-system) | |
2348 | (propagated-inputs | |
081d143d RW |
2349 | `(("r-quadprog" ,r-quadprog) |
2350 | ("r-xts" ,r-xts) | |
b72b42cf | 2351 | ("r-zoo" ,r-zoo))) |
d062957a | 2352 | (home-page "https://r-forge.r-project.org/projects/returnanalytics/") |
b72b42cf RW |
2353 | (synopsis "Econometric tools for performance and risk analysis") |
2354 | (description "This is a collection of econometric functions for | |
2355 | performance and risk analysis. This package aims to aid practitioners and | |
2356 | researchers in utilizing the latest research in analysis of non-normal return | |
2357 | streams. In general, it is most tested on return (rather than price) data on | |
2358 | a regular scale, but most functions will work with irregular return data as | |
2359 | well, and increasing numbers of functions will work with P&L or price data | |
2360 | where possible.") | |
2361 | ;; Either version may be picked. | |
2362 | (license (list license:gpl2 license:gpl3)))) | |
018cf270 RW |
2363 | |
2364 | (define-public r-laeken | |
2365 | (package | |
2366 | (name "r-laeken") | |
2367 | (version "0.4.6") | |
2368 | (source | |
2369 | (origin | |
2370 | (method url-fetch) | |
2371 | (uri (cran-uri "laeken" version)) | |
2372 | (sha256 | |
2373 | (base32 | |
2374 | "1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6")))) | |
2375 | (build-system r-build-system) | |
2376 | (propagated-inputs | |
2377 | `(("r-boot" ,r-boot) | |
2378 | ("r-mass" ,r-mass))) | |
e9960d8c | 2379 | (home-page "https://cran.r-project.org/web/packages/laeken/") |
018cf270 RW |
2380 | (synopsis "Estimation of indicators on social exclusion and poverty") |
2381 | (description "This package provides tools for the estimation of indicators | |
2382 | on social exclusion and poverty, as well as an implementation of Pareto tail | |
2383 | modeling for empirical income distributions.") | |
2384 | (license license:gpl2+))) | |
e5c17b8d RW |
2385 | |
2386 | (define-public r-vcd | |
2387 | (package | |
2388 | (name "r-vcd") | |
2960f965 | 2389 | (version "1.4-4") |
e5c17b8d RW |
2390 | (source |
2391 | (origin | |
2392 | (method url-fetch) | |
2393 | (uri (cran-uri "vcd" version)) | |
2394 | (sha256 | |
2395 | (base32 | |
2960f965 | 2396 | "1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5")))) |
e5c17b8d RW |
2397 | (build-system r-build-system) |
2398 | (propagated-inputs | |
2399 | `(("r-colorspace" ,r-colorspace) | |
2400 | ("r-lmtest" ,r-lmtest) | |
2401 | ("r-mass" ,r-mass))) | |
e9960d8c | 2402 | (home-page "https://cran.r-project.org/web/packages/vcd/") |
e5c17b8d RW |
2403 | (synopsis "Visualizing categorical data") |
2404 | (description "This package provides visualization techniques, data sets, | |
2405 | summary and inference procedures aimed particularly at categorical data. | |
2406 | Special emphasis is given to highly extensible grid graphics. The package was | |
2407 | originally inspired by the book \"Visualizing Categorical Data\" by Michael | |
2408 | Friendly and is now the main support package for a new book, \"Discrete Data | |
2409 | Analysis with R\" by Michael Friendly and David Meyer (2015).") | |
2410 | (license license:gpl2))) | |
ae164260 RW |
2411 | |
2412 | (define-public r-ica | |
2413 | (package | |
2414 | (name "r-ica") | |
fabf0993 | 2415 | (version "1.0-2") |
ae164260 RW |
2416 | (source |
2417 | (origin | |
2418 | (method url-fetch) | |
2419 | (uri (cran-uri "ica" version)) | |
2420 | (sha256 | |
2421 | (base32 | |
fabf0993 | 2422 | "0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7")))) |
ae164260 | 2423 | (build-system r-build-system) |
e9960d8c | 2424 | (home-page "https://cran.r-project.org/web/packages/ica/") |
ae164260 RW |
2425 | (synopsis "Independent component analysis") |
2426 | (description "This package provides tools for @dfn{Independent Component | |
2427 | Analysis} (ICA) using various algorithms: FastICA, | |
2428 | Information-Maximization (Infomax), and @dfn{Joint Approximate Diagonalization | |
2429 | of Eigenmatrices} (JADE).") | |
2430 | (license license:gpl2+))) | |
bf025ff6 RW |
2431 | |
2432 | (define-public r-dtw | |
2433 | (package | |
2434 | (name "r-dtw") | |
cda93e83 | 2435 | (version "1.20-1") |
bf025ff6 RW |
2436 | (source |
2437 | (origin | |
2438 | (method url-fetch) | |
2439 | (uri (cran-uri "dtw" version)) | |
2440 | (sha256 | |
2441 | (base32 | |
cda93e83 | 2442 | "1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3")))) |
bf025ff6 RW |
2443 | (build-system r-build-system) |
2444 | (propagated-inputs `(("r-proxy" ,r-proxy))) | |
2445 | (home-page "http://dtw.r-forge.r-project.org/") | |
2446 | (synopsis "Dynamic Time Warping Algorithms") | |
2447 | (description "This package provides a comprehensive implementation of | |
2448 | @dfn{dynamic time warping} (DTW) algorithms in R. DTW computes the | |
2449 | optimal (least cumulative distance) alignment between points of two time | |
2450 | series. Common DTW variants covered include local (slope) and global (window) | |
2451 | constraints, subsequence matches, arbitrary distance definitions, | |
2452 | normalizations, minimum variance matching, and so on.") | |
2453 | (license license:gpl2+))) | |
15ef07f0 RW |
2454 | |
2455 | (define-public r-sdmtools | |
2456 | (package | |
2457 | (name "r-sdmtools") | |
2458 | (version "1.1-221") | |
2459 | (source | |
2460 | (origin | |
2461 | (method url-fetch) | |
2462 | (uri (cran-uri "SDMTools" version)) | |
2463 | (sha256 | |
2464 | (base32 | |
2465 | "1kacrpamshv7wz83yn45sfbw4m9c44xrrngzcklnwx8gcxx2knm6")))) | |
2466 | (properties `((upstream-name . "SDMTools"))) | |
2467 | (build-system r-build-system) | |
2468 | (propagated-inputs `(("r-r-utils" ,r-r-utils))) | |
2469 | (home-page "http://www.rforge.net/SDMTools/") | |
2470 | (synopsis "Species distribution modelling tools") | |
2471 | (description "This packages provides a set of tools for post processing | |
2472 | the outcomes of species distribution modeling exercises. It includes novel | |
2473 | methods for comparing models and tracking changes in distributions through | |
2474 | time. It further includes methods for visualizing outcomes, selecting | |
2475 | thresholds, calculating measures of accuracy and landscape fragmentation | |
2476 | statistics, etc.") | |
2477 | (license license:gpl3+))) | |
ae3f2079 RW |
2478 | |
2479 | (define-public r-scatterplot3d | |
2480 | (package | |
2481 | (name "r-scatterplot3d") | |
5ade82bb | 2482 | (version "0.3-41") |
ae3f2079 RW |
2483 | (source |
2484 | (origin | |
2485 | (method url-fetch) | |
2486 | (uri (cran-uri "scatterplot3d" version)) | |
2487 | (sha256 | |
2488 | (base32 | |
5ade82bb | 2489 | "152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc")))) |
ae3f2079 | 2490 | (build-system r-build-system) |
e9960d8c | 2491 | (home-page "https://cran.r-project.org/web/packages/scatterplot3d/") |
ae3f2079 RW |
2492 | (synopsis "3D scatter plot") |
2493 | (description "This package provides an implementation of scatter plots for | |
2494 | plotting. a three dimensional point cloud.") | |
2495 | (license license:gpl2))) | |
f90018e5 RW |
2496 | |
2497 | (define-public r-ggridges | |
2498 | (package | |
2499 | (name "r-ggridges") | |
0edd2fd1 | 2500 | (version "0.5.0") |
f90018e5 RW |
2501 | (source |
2502 | (origin | |
2503 | (method url-fetch) | |
2504 | (uri (cran-uri "ggridges" version)) | |
2505 | (sha256 | |
2506 | (base32 | |
0edd2fd1 | 2507 | "1znvsbl3px8dddpjgdrygnpz4s685wizi0jnjvx2hrz58i0chjqj")))) |
f90018e5 RW |
2508 | (build-system r-build-system) |
2509 | (propagated-inputs | |
2510 | `(("r-ggplot2" ,r-ggplot2) | |
2511 | ("r-plyr" ,r-plyr) | |
0edd2fd1 RW |
2512 | ("r-scales" ,r-scales) |
2513 | ("r-withr" ,r-withr))) | |
f90018e5 RW |
2514 | (home-page "https://github.com/clauswilke/ggridges") |
2515 | (synopsis "Ridgeline plots in ggplot2") | |
2516 | (description | |
2517 | "Ridgeline plots provide a convenient way of visualizing changes in | |
2518 | distributions over time or space. This package enables the creation of such | |
2519 | plots in @code{ggplot2}.") | |
2520 | (license license:gpl2))) | |
007f6d98 RW |
2521 | |
2522 | (define-public r-ggjoy | |
2523 | (package | |
2524 | (name "r-ggjoy") | |
c36745cf | 2525 | (version "0.4.1") |
007f6d98 RW |
2526 | (source |
2527 | (origin | |
2528 | (method url-fetch) | |
2529 | (uri (cran-uri "ggjoy" version)) | |
2530 | (sha256 | |
2531 | (base32 | |
c36745cf | 2532 | "012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj")))) |
007f6d98 RW |
2533 | (build-system r-build-system) |
2534 | (propagated-inputs | |
2535 | `(("r-ggplot2" ,r-ggplot2) | |
2536 | ("r-ggridges" ,r-ggridges))) | |
2537 | (home-page "https://github.com/clauswilke/ggjoy") | |
2538 | (synopsis "Joyplots in ggplot2") | |
2539 | (description "Joyplots provide a convenient way of visualizing changes in | |
2540 | distributions over time or space. This package enables the creation of such | |
2541 | plots in @code{ggplot2}.") | |
2542 | (license license:gpl2))) | |
2976f304 RW |
2543 | |
2544 | (define-public r-cli | |
2545 | (package | |
2546 | (name "r-cli") | |
2547 | (version "1.0.0") | |
2548 | (source | |
2549 | (origin | |
2550 | (method url-fetch) | |
2551 | (uri (cran-uri "cli" version)) | |
2552 | (sha256 | |
2553 | (base32 | |
2554 | "07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg")))) | |
2555 | (build-system r-build-system) | |
2556 | (propagated-inputs | |
2557 | `(("r-assertthat" ,r-assertthat) | |
2558 | ("r-crayon" ,r-crayon))) | |
2559 | (home-page "https://github.com/r-lib/cli#readme") | |
2560 | (synopsis "Helpers for developing command line interfaces") | |
2561 | (description "This package provides a suite of tools designed to build | |
2562 | attractive command line interfaces (CLIs). It includes tools for drawing | |
2563 | rules, boxes, trees, and Unicode symbols with ASCII alternatives.") | |
2564 | (license license:expat))) | |
55577393 RW |
2565 | |
2566 | (define-public r-argparser | |
2567 | (package | |
2568 | (name "r-argparser") | |
2569 | (version "0.4") | |
2570 | (source | |
2571 | (origin | |
2572 | (method url-fetch) | |
2573 | (uri (cran-uri "argparser" version)) | |
2574 | (sha256 | |
2575 | (base32 | |
2576 | "0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9")))) | |
2577 | (build-system r-build-system) | |
2578 | (home-page "https://bitbucket.org/djhshih/argparser") | |
2579 | (synopsis "Command-line argument parser") | |
2580 | (description | |
2581 | "This package provides a cross-platform command-line argument parser | |
2582 | written purely in R with no external dependencies. It is useful with the | |
2583 | Rscript front-end and facilitates turning an R script into an executable | |
2584 | script.") | |
2585 | (license license:gpl3+))) | |
a3257d42 RW |
2586 | |
2587 | (define-public r-debugme | |
2588 | (package | |
2589 | (name "r-debugme") | |
2590 | (version "1.1.0") | |
2591 | (source | |
2592 | (origin | |
2593 | (method url-fetch) | |
2594 | (uri (cran-uri "debugme" version)) | |
2595 | (sha256 | |
2596 | (base32 | |
2597 | "1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd")))) | |
2598 | (build-system r-build-system) | |
2599 | (propagated-inputs `(("r-crayon" ,r-crayon))) | |
2600 | (home-page "https://github.com/r-lib/debugme#readme") | |
2601 | (synopsis "Debug R packages") | |
2602 | (description | |
2603 | "This package allows the user to specify debug messages as special string | |
2604 | constants, and control debugging of packages via environment variables.") | |
2605 | (license license:expat))) | |
2058e37d RW |
2606 | |
2607 | (define-public r-processx | |
2608 | (package | |
2609 | (name "r-processx") | |
4b6a0dfc | 2610 | (version "3.2.0") |
2058e37d RW |
2611 | (source |
2612 | (origin | |
2613 | (method url-fetch) | |
2614 | (uri (cran-uri "processx" version)) | |
2615 | (sha256 | |
2616 | (base32 | |
4b6a0dfc | 2617 | "1pzx4ap4xa07gf9zkd6hacdsnb9sp3kb60a7v7ljl0ywrcpn1fn4")))) |
2058e37d RW |
2618 | (build-system r-build-system) |
2619 | (propagated-inputs | |
2620 | `(("r-assertthat" ,r-assertthat) | |
2621 | ("r-crayon" ,r-crayon) | |
4b6a0dfc | 2622 | ("r-ps" ,r-ps) |
a8060630 RW |
2623 | ("r-r6" ,r-r6) |
2624 | ("r-testthat" ,r-testthat))) | |
2058e37d RW |
2625 | (home-page "https://github.com/r-lib/processx3") |
2626 | (synopsis "Execute and control system processes") | |
2627 | (description | |
2628 | "This package provides portable tools to run system processes in the | |
2629 | background. It can check if a background process is running; wait on a | |
2630 | background process to finish; get the exit status of finished processes; kill | |
2631 | background processes and their children; restart processes. It can read the | |
2632 | standard output and error of the processes, using non-blocking connections. | |
2633 | @code{processx} can poll a process for standard output or error, with a | |
2634 | timeout. It can also poll several processes at once.") | |
2635 | (license license:expat))) | |
f285346a RW |
2636 | |
2637 | (define-public r-tsp | |
2638 | (package | |
2639 | (name "r-tsp") | |
127522c4 | 2640 | (version "1.1-6") |
f285346a RW |
2641 | (source |
2642 | (origin | |
2643 | (method url-fetch) | |
2644 | (uri (cran-uri "TSP" version)) | |
2645 | (sha256 | |
2646 | (base32 | |
127522c4 | 2647 | "1ym97xl2icjpfkrici0wig29w06bb704hp51v7h5liygjlwpkhlc")))) |
f285346a RW |
2648 | (properties `((upstream-name . "TSP"))) |
2649 | (build-system r-build-system) | |
2650 | (propagated-inputs `(("r-foreach" ,r-foreach))) | |
2651 | (home-page "https://cran.r-project.org/web/packages/TSP/") | |
2652 | (synopsis "Traveling salesperson problem (TSP)") | |
2653 | (description "This package provides basic infrastructure and some | |
2654 | algorithms for the @dfn{traveling salesperson problem}(TSP) (also known as the | |
2655 | traveling salesman problem).") | |
2656 | (license license:gpl3))) | |
ffb59bce RW |
2657 | |
2658 | (define-public r-qap | |
2659 | (package | |
2660 | (name "r-qap") | |
2661 | (version "0.1-1") | |
2662 | (source | |
2663 | (origin | |
2664 | (method url-fetch) | |
2665 | (uri (cran-uri "qap" version)) | |
2666 | (sha256 | |
2667 | (base32 | |
2668 | "0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0")))) | |
2669 | (build-system r-build-system) | |
2670 | (native-inputs `(("gfortran" ,gfortran))) | |
d062957a | 2671 | (home-page "https://cran.r-project.org/web/packages/qap/") |
ffb59bce RW |
2672 | (synopsis "Heuristics for the quadratic assignment problem (QAP)") |
2673 | (description "This package implements heuristics for the @dfn{quadratic | |
2674 | assignment problem} (QAP). Currently only a simulated annealing heuristic is | |
2675 | available.") | |
2676 | (license license:gpl3))) | |
7fe49f2a RW |
2677 | |
2678 | (define-public r-gclus | |
2679 | (package | |
2680 | (name "r-gclus") | |
2681 | (version "1.3.1") | |
2682 | (source | |
2683 | (origin | |
2684 | (method url-fetch) | |
2685 | (uri (cran-uri "gclus" version)) | |
2686 | (sha256 | |
2687 | (base32 | |
2688 | "02ba6zj9bjwrzykamjp40ajynx9xjx9h2i85n0ym0r5lcki4x6fn")))) | |
2689 | (build-system r-build-system) | |
2690 | (propagated-inputs `(("r-cluster" ,r-cluster))) | |
d062957a | 2691 | (home-page "https://cran.r-project.org/web/packages/gclus/") |
7fe49f2a RW |
2692 | (synopsis "Clustering graphics") |
2693 | (description "This package orders panels in scatterplot matrices and | |
2694 | parallel coordinate displays by some merit index. It contains various indices | |
2695 | of merit, ordering functions, and enhanced versions of @code{pairs} and | |
2696 | @code{parcoord} which color panels according to their merit level.") | |
2697 | (license license:gpl2+))) | |
8e5e26d2 RW |
2698 | |
2699 | (define-public r-webshot | |
2700 | (package | |
2701 | (name "r-webshot") | |
2702 | (version "0.5.0") | |
2703 | (source | |
2704 | (origin | |
2705 | (method url-fetch) | |
2706 | (uri (cran-uri "webshot" version)) | |
2707 | (sha256 | |
2708 | (base32 | |
2709 | "07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh")))) | |
2710 | (build-system r-build-system) | |
2711 | (propagated-inputs | |
2712 | `(("r-jsonlite" ,r-jsonlite) | |
2713 | ("r-magrittr" ,r-magrittr) | |
2714 | ("r-processx" ,r-processx) | |
2715 | ("r-withr" ,r-withr))) | |
2716 | (home-page "https://github.com/wch/webshot/") | |
2717 | (synopsis "Take screenshots of web pages") | |
2718 | (description | |
2719 | "Webshot makes it easy to take screenshots of web pages from within R. | |
2720 | It can also run Shiny applications locally and take screenshots of the | |
2721 | application; and it can render and screenshot static as well as interactive R | |
2722 | Markdown documents.") | |
2723 | (license license:gpl2))) | |
2e9d187b RW |
2724 | |
2725 | (define-public r-seriation | |
2726 | (package | |
2727 | (name "r-seriation") | |
2728 | (version "1.2-3") | |
2729 | (source | |
2730 | (origin | |
2731 | (method url-fetch) | |
2732 | (uri (cran-uri "seriation" version)) | |
2733 | (sha256 | |
2734 | (base32 | |
2735 | "1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92")))) | |
2736 | (build-system r-build-system) | |
2737 | (propagated-inputs | |
2738 | `(("r-cluster" ,r-cluster) | |
2739 | ("r-colorspace" ,r-colorspace) | |
2740 | ("r-dendextend" ,r-dendextend) | |
2741 | ("r-gclus" ,r-gclus) | |
2742 | ("r-gplots" ,r-gplots) | |
2743 | ("r-mass" ,r-mass) | |
2744 | ("r-qap" ,r-qap) | |
2745 | ("r-registry" ,r-registry) | |
2746 | ("r-tsp" ,r-tsp))) | |
2747 | (native-inputs `(("gfortran" ,gfortran))) | |
2748 | (home-page "http://s2.smu.edu/IDA/seriation/") | |
2749 | (synopsis "Infrastructure for ordering objects using seriation") | |
2750 | (description | |
2751 | "This package provides infrastructure for seriation with an | |
2752 | implementation of several seriation/sequencing techniques to reorder matrices, | |
2753 | dissimilarity matrices, and dendrograms. It also provides (optimally) | |
2754 | reordered heatmaps, color images and clustering visualizations like | |
2755 | dissimilarity plots, and visual assessment of cluster tendency plots (VAT and | |
2756 | iVAT).") | |
2757 | (license license:gpl3))) | |
e9e78d2c | 2758 | |
f6d2b45c RW |
2759 | (define-public r-xfun |
2760 | (package | |
2761 | (name "r-xfun") | |
2045af80 | 2762 | (version "0.3") |
f6d2b45c RW |
2763 | (source |
2764 | (origin | |
2765 | (method url-fetch) | |
2766 | (uri (cran-uri "xfun" version)) | |
2767 | (sha256 | |
2768 | (base32 | |
2045af80 | 2769 | "1r11dd49ngmjgbjdv28a9c1jp8cg1l50x0acbsamzz576p8i2wl9")))) |
f6d2b45c RW |
2770 | (build-system r-build-system) |
2771 | (home-page "https://github.com/yihui/xfun") | |
2772 | (synopsis "Miscellaneous functions") | |
2773 | (description | |
2774 | "This package provides miscellaneous functions commonly used in other | |
2775 | packages maintained by Yihui Xie.") | |
2776 | (license license:expat))) | |
f2442968 RW |
2777 | |
2778 | (define-public r-utf8 | |
2779 | (package | |
2780 | (name "r-utf8") | |
65ea783f | 2781 | (version "1.1.4") |
f2442968 RW |
2782 | (source |
2783 | (origin | |
2784 | (method url-fetch) | |
2785 | (uri (cran-uri "utf8" version)) | |
2786 | (sha256 | |
2787 | (base32 | |
65ea783f | 2788 | "0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn")))) |
f2442968 RW |
2789 | (build-system r-build-system) |
2790 | (home-page "https://github.com/patperry/r-utf8") | |
2791 | (synopsis "Unicode text processing") | |
2792 | (description | |
2793 | "This package provides tools to process and print UTF-8 encoded | |
2794 | international text (Unicode). Input, validate, normalize, encode, format, and | |
2795 | display.") | |
2796 | (license license:asl2.0))) | |
c555ccab RW |
2797 | |
2798 | (define-public r-pillar | |
2799 | (package | |
2800 | (name "r-pillar") | |
6f5b157e | 2801 | (version "1.3.0") |
c555ccab RW |
2802 | (source |
2803 | (origin | |
2804 | (method url-fetch) | |
2805 | (uri (cran-uri "pillar" version)) | |
2806 | (sha256 | |
2807 | (base32 | |
6f5b157e | 2808 | "1q6arybmfqxhp5zqj1fri5pb8v7ywcv7bmgf81rrmgl892p4bn5f")))) |
c555ccab RW |
2809 | (build-system r-build-system) |
2810 | (propagated-inputs | |
2811 | `(("r-cli" ,r-cli) | |
2812 | ("r-crayon" ,r-crayon) | |
6f5b157e | 2813 | ("r-fansi" ,r-fansi) |
c555ccab RW |
2814 | ("r-rlang" ,r-rlang) |
2815 | ("r-utf8" ,r-utf8))) | |
2816 | (home-page "https://github.com/r-lib/pillar") | |
2817 | (synopsis "Coloured formatting for columns") | |
2818 | (description | |
2819 | "This package provides a @code{pillar} generic designed for formatting | |
2820 | columns of data using the full range of colours provided by modern | |
2821 | terminals.") | |
2822 | (license license:gpl3))) | |
1c791925 RW |
2823 | |
2824 | (define-public r-uuid | |
2825 | (package | |
2826 | (name "r-uuid") | |
2827 | (version "0.1-2") | |
2828 | (source | |
2829 | (origin | |
2830 | (method url-fetch) | |
2831 | (uri (cran-uri "uuid" version)) | |
2832 | (sha256 | |
2833 | (base32 | |
2834 | "1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx")))) | |
2835 | (build-system r-build-system) | |
2836 | (home-page "http://www.rforge.net/uuid") | |
2837 | (synopsis "Tools for generating and handling of UUIDs") | |
2838 | (description | |
2839 | "This package provides tools for generating and handling of | |
2840 | @dfn{Universally Unique Identifiers} (UUIDs).") | |
2841 | (license license:expat))) | |
846f4c23 RW |
2842 | |
2843 | (define-public r-tinytex | |
2844 | (package | |
2845 | (name "r-tinytex") | |
d97d98e1 | 2846 | (version "0.8") |
846f4c23 RW |
2847 | (source |
2848 | (origin | |
2849 | (method url-fetch) | |
2850 | (uri (cran-uri "tinytex" version)) | |
2851 | (sha256 | |
2852 | (base32 | |
d97d98e1 | 2853 | "1bgpr5i5399jf9n6pg2mm4aamisbhppg082ad0wv1j4g0rlxf1gy")))) |
846f4c23 | 2854 | (build-system r-build-system) |
8b0701d9 TGR |
2855 | (propagated-inputs |
2856 | `(("r-xfun" ,r-xfun))) | |
846f4c23 RW |
2857 | (home-page "https://github.com/yihui/tinytex") |
2858 | (synopsis "Helper functions for TeX Live and compiling LaTeX documents") | |
2859 | (description | |
2860 | "This package provides helper functions to install and maintain the LaTeX | |
2861 | distribution named TinyTeX, a lightweight, cross-platform, portable, and | |
2862 | easy-to-maintain version of TeX Live. This package also contains helper | |
2863 | functions to compile LaTeX documents, and install missing LaTeX packages | |
2864 | automatically.") | |
2865 | (license license:expat))) | |
4376166b RW |
2866 | |
2867 | (define-public r-metap | |
2868 | (package | |
2869 | (name "r-metap") | |
e32368c1 | 2870 | (version "1.0") |
4376166b RW |
2871 | (source |
2872 | (origin | |
2873 | (method url-fetch) | |
2874 | (uri (cran-uri "metap" version)) | |
2875 | (sha256 | |
2876 | (base32 | |
e32368c1 | 2877 | "18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h")))) |
4376166b RW |
2878 | (build-system r-build-system) |
2879 | (propagated-inputs | |
e32368c1 RW |
2880 | `(("r-lattice" ,r-lattice) |
2881 | ("r-rdpack" ,r-rdpack))) | |
4376166b RW |
2882 | (home-page "http://www.dewey.myzen.co.uk/meta/meta.html") |
2883 | (synopsis "Meta-analysis of significance values") | |
2884 | (description | |
2885 | "The canonical way to perform meta-analysis involves using effect sizes. | |
2886 | When they are not available this package provides a number of methods for | |
2887 | meta-analysis of significance values including the methods of Edgington, | |
2888 | Fisher, Stouffer, Tippett, and Wilkinson; a number of data-sets to replicate | |
2889 | published results; and a routine for graphical display.") | |
2890 | (license license:gpl2))) | |
5f4565b1 RW |
2891 | |
2892 | (define-public r-network | |
2893 | (package | |
2894 | (name "r-network") | |
92edaaea | 2895 | (version "1.13.0.1") |
5f4565b1 RW |
2896 | (source |
2897 | (origin | |
2898 | (method url-fetch) | |
2899 | (uri (cran-uri "network" version)) | |
2900 | (sha256 | |
2901 | (base32 | |
92edaaea | 2902 | "1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0")))) |
5f4565b1 | 2903 | (build-system r-build-system) |
40862677 | 2904 | (home-page "https://statnet.org/") |
5f4565b1 RW |
2905 | (synopsis "Classes for relational data") |
2906 | (description | |
2907 | "This package provides tools to create and modify network objects. The | |
2908 | @code{network} class can represent a range of relational data types, and | |
2909 | supports arbitrary vertex/edge/graph attributes.") | |
2910 | (license license:gpl2+))) | |
07a2f34d RW |
2911 | |
2912 | (define-public r-statnet-common | |
2913 | (package | |
2914 | (name "r-statnet-common") | |
be5642eb | 2915 | (version "4.1.4") |
07a2f34d RW |
2916 | (source |
2917 | (origin | |
2918 | (method url-fetch) | |
2919 | (uri (cran-uri "statnet.common" version)) | |
2920 | (sha256 | |
2921 | (base32 | |
be5642eb | 2922 | "14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic")))) |
07a2f34d RW |
2923 | (properties |
2924 | `((upstream-name . "statnet.common"))) | |
2925 | (build-system r-build-system) | |
1268a995 RW |
2926 | (propagated-inputs |
2927 | `(("r-coda" ,r-coda))) | |
40862677 | 2928 | (home-page "https://statnet.org") |
07a2f34d RW |
2929 | (synopsis "R scripts and utilities used by the Statnet software") |
2930 | (description "This package provides non-statistical utilities used by the | |
2931 | software developed by the Statnet Project.") | |
2932 | (license license:gpl3))) | |
1088744d RW |
2933 | |
2934 | (define-public r-sna | |
2935 | (package | |
2936 | (name "r-sna") | |
2937 | (version "2.4") | |
2938 | (source | |
2939 | (origin | |
2940 | (method url-fetch) | |
2941 | (uri (cran-uri "sna" version)) | |
2942 | (sha256 | |
2943 | (base32 | |
2944 | "1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2")))) | |
2945 | (build-system r-build-system) | |
2946 | (propagated-inputs | |
2947 | `(("r-network" ,r-network) | |
2948 | ("r-statnet-common" ,r-statnet-common))) | |
40862677 | 2949 | (home-page "https://statnet.org") |
1088744d RW |
2950 | (synopsis "Tools for social network analysis") |
2951 | (description | |
2952 | "This package provides a range of tools for social network analysis, | |
2953 | including node and graph-level indices, structural distance and covariance | |
2954 | methods, structural equivalence detection, network regression, random graph | |
2955 | generation, and 2D/3D network visualization.") | |
2956 | (license license:gpl2+))) | |
93c21ddc RW |
2957 | |
2958 | (define-public r-ttr | |
2959 | (package | |
2960 | (name "r-ttr") | |
2961 | (version "0.23-3") | |
2962 | (source | |
2963 | (origin | |
2964 | (method url-fetch) | |
2965 | (uri (cran-uri "TTR" version)) | |
2966 | (sha256 | |
2967 | (base32 | |
2968 | "07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1")))) | |
2969 | (properties `((upstream-name . "TTR"))) | |
2970 | (build-system r-build-system) | |
2971 | (propagated-inputs | |
2972 | `(("r-curl" ,r-curl) | |
2973 | ("r-xts" ,r-xts) | |
2974 | ("r-zoo" ,r-zoo))) | |
2975 | (native-inputs `(("gfortran" ,gfortran))) | |
2976 | (home-page "https://github.com/joshuaulrich/TTR") | |
2977 | (synopsis "Technical trading rules") | |
2978 | (description | |
2979 | "This package provides functions and data to construct technical trading | |
2980 | rules with R.") | |
2981 | (license license:gpl2))) | |
0b64332c RW |
2982 | |
2983 | (define-public r-leaps | |
2984 | (package | |
2985 | (name "r-leaps") | |
2986 | (version "3.0") | |
2987 | (source | |
2988 | (origin | |
2989 | (method url-fetch) | |
2990 | (uri (cran-uri "leaps" version)) | |
2991 | (sha256 | |
2992 | (base32 | |
2993 | "11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m")))) | |
2994 | (build-system r-build-system) | |
2995 | (native-inputs `(("gfortran" ,gfortran))) | |
d062957a | 2996 | (home-page "https://cran.r-project.org/web/packages/leaps/") |
0b64332c RW |
2997 | (synopsis "Regression subset selection") |
2998 | (description | |
2999 | "This package provides tools for regression subset selection, including | |
3000 | exhaustive search.") | |
3001 | (license license:gpl2+))) | |
d3cb62e5 RW |
3002 | |
3003 | (define-public r-splus2r | |
3004 | (package | |
3005 | (name "r-splus2r") | |
3006 | (version "1.2-2") | |
3007 | (source | |
3008 | (origin | |
3009 | (method url-fetch) | |
3010 | (uri (cran-uri "splus2R" version)) | |
3011 | (sha256 | |
3012 | (base32 | |
3013 | "0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz")))) | |
3014 | (properties `((upstream-name . "splus2R"))) | |
3015 | (build-system r-build-system) | |
3016 | (native-inputs `(("gfortran" ,gfortran))) | |
d062957a | 3017 | (home-page "https://cran.r-project.org/web/packages/splus2R/") |
d3cb62e5 RW |
3018 | (synopsis "Supplemental S-PLUS functionality in R") |
3019 | (description | |
3020 | "Currently there are many functions in S-PLUS that are missing in R. To | |
3021 | facilitate the conversion of S-PLUS packages to R packages, this package | |
3022 | provides some missing S-PLUS functionality in R.") | |
3023 | (license license:gpl2))) | |
034ac9d6 RW |
3024 | |
3025 | (define-public r-ifultools | |
3026 | (package | |
3027 | (name "r-ifultools") | |
3028 | (version "2.0-4") | |
3029 | (source | |
3030 | (origin | |
3031 | (method url-fetch) | |
3032 | (uri (cran-uri "ifultools" version)) | |
3033 | (sha256 | |
3034 | (base32 | |
3035 | "0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092")))) | |
3036 | (build-system r-build-system) | |
3037 | (propagated-inputs | |
3038 | `(("r-mass" ,r-mass) | |
3039 | ("r-splus2r" ,r-splus2r))) | |
d062957a | 3040 | (home-page "https://cran.r-project.org/web/packages/ifultools/") |
034ac9d6 RW |
3041 | (synopsis "Insightful research tools") |
3042 | (description "This package provides C code used by the wmtsa, fractal, and | |
3043 | sapa R packages.") | |
3044 | (license license:gpl2))) | |
0be7effe RW |
3045 | |
3046 | (define-public r-sapa | |
3047 | (package | |
3048 | (name "r-sapa") | |
3049 | (version "2.0-2") | |
3050 | (source | |
3051 | (origin | |
3052 | (method url-fetch) | |
3053 | (uri (cran-uri "sapa" version)) | |
3054 | (sha256 | |
3055 | (base32 | |
3056 | "056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds")))) | |
3057 | (build-system r-build-system) | |
3058 | (propagated-inputs | |
3059 | `(("r-ifultools" ,r-ifultools) | |
3060 | ("r-splus2r" ,r-splus2r))) | |
d062957a | 3061 | (home-page "https://cran.r-project.org/web/packages/sapa/") |
0be7effe RW |
3062 | (synopsis "Spectral analysis for physical applications") |
3063 | (description "This package provides software for the book Spectral | |
3064 | Analysis for Physical Applications, Donald B. Percival and Andrew T. Walden, | |
3065 | Cambridge University Press, 1993.") | |
3066 | (license license:gpl2))) | |
dceb1592 RW |
3067 | |
3068 | (define-public r-quantmod | |
3069 | (package | |
3070 | (name "r-quantmod") | |
d087f47d | 3071 | (version "0.4-13") |
dceb1592 RW |
3072 | (source |
3073 | (origin | |
3074 | (method url-fetch) | |
3075 | (uri (cran-uri "quantmod" version)) | |
3076 | (sha256 | |
3077 | (base32 | |
d087f47d | 3078 | "16aldg96z7amp5mr90nb8127yy04gxsihfr26km5p3cx3j117yv0")))) |
dceb1592 RW |
3079 | (build-system r-build-system) |
3080 | (propagated-inputs | |
3081 | `(("r-curl" ,r-curl) | |
3082 | ("r-ttr" ,r-ttr) | |
3083 | ("r-xts" ,r-xts) | |
3084 | ("r-zoo" ,r-zoo))) | |
d062957a | 3085 | (home-page "https://cran.r-project.org/web/packages/quantmod/") |
dceb1592 RW |
3086 | (synopsis "Quantitative financial modelling framework") |
3087 | (description "This package provides a quantitative financial modelling | |
3088 | framework to allow users to specify, build, trade, and analyse quantitative | |
3089 | financial trading strategies.") | |
3090 | (license license:gpl3))) | |
b6dc3255 RW |
3091 | |
3092 | (define-public r-tseries | |
3093 | (package | |
3094 | (name "r-tseries") | |
83d5c2e1 | 3095 | (version "0.10-45") |
b6dc3255 RW |
3096 | (source |
3097 | (origin | |
3098 | (method url-fetch) | |
3099 | (uri (cran-uri "tseries" version)) | |
3100 | (sha256 | |
3101 | (base32 | |
83d5c2e1 | 3102 | "14s1glh5zzdvdl05a2z7ymhgf962svxf8xircghg5sc649lb33n0")))) |
b6dc3255 RW |
3103 | (build-system r-build-system) |
3104 | (propagated-inputs | |
3105 | `(("r-quadprog" ,r-quadprog) | |
3106 | ("r-quantmod" ,r-quantmod) | |
3107 | ("r-zoo" ,r-zoo))) | |
3108 | (native-inputs | |
3109 | `(("gfortran" ,gfortran))) | |
d062957a | 3110 | (home-page "https://cran.r-project.org/web/packages/tseries/") |
b6dc3255 RW |
3111 | (synopsis "Time series analysis and computational finance") |
3112 | (description | |
3113 | "This package provides functions relating to time series analysis and | |
3114 | computational finance.") | |
3115 | (license license:gpl2))) | |
a2c079a7 RW |
3116 | |
3117 | (define-public r-wmtsa | |
3118 | (package | |
3119 | (name "r-wmtsa") | |
3120 | (version "2.0-3") | |
3121 | (source | |
3122 | (origin | |
3123 | (method url-fetch) | |
3124 | (uri (cran-uri "wmtsa" version)) | |
3125 | (sha256 | |
3126 | (base32 | |
3127 | "1q436krz5p1f4a7a7sya6a9rh9x9mi8zzcgq66gbk9w9w4hcqcj6")))) | |
3128 | (build-system r-build-system) | |
3129 | (propagated-inputs | |
3130 | `(("r-ifultools" ,r-ifultools) | |
3131 | ("r-mass" ,r-mass) | |
3132 | ("r-splus2r" ,r-splus2r))) | |
d062957a | 3133 | (home-page "https://cran.r-project.org/web/packages/wmtsa/") |
a2c079a7 RW |
3134 | (synopsis "Wavelet methods for time series analysis") |
3135 | (description | |
3136 | "This package provides software to accompany the book \"Wavelet Methods | |
3137 | for Time Series Analysis\", Donald B. Percival and Andrew T. Walden, Cambridge | |
3138 | University Press, 2000.") | |
3139 | (license license:gpl2))) | |
4993a02a RW |
3140 | |
3141 | (define-public r-tsa | |
3142 | (package | |
3143 | (name "r-tsa") | |
1fe9919a | 3144 | (version "1.2") |
4993a02a RW |
3145 | (source |
3146 | (origin | |
3147 | (method url-fetch) | |
3148 | (uri (cran-uri "TSA" version)) | |
3149 | (sha256 | |
3150 | (base32 | |
1fe9919a | 3151 | "0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q")))) |
4993a02a RW |
3152 | (properties `((upstream-name . "TSA"))) |
3153 | (build-system r-build-system) | |
3154 | (propagated-inputs | |
3155 | `(("r-leaps" ,r-leaps) | |
3156 | ("r-locfit" ,r-locfit) | |
1fe9919a | 3157 | ("r-mgcv" ,r-mgcv))) |
4993a02a RW |
3158 | (home-page "http://www.stat.uiowa.edu/~kchan/TSA.htm") |
3159 | (synopsis "Time series analysis") | |
3160 | (description | |
3161 | "This package contains R functions and datasets detailed in the book | |
3162 | \"Time Series Analysis with Applications in R (second edition)\" by Jonathan | |
3163 | Cryer and Kung-Sik Chan.") | |
3164 | (license license:gpl2+))) | |
19da7fe3 RW |
3165 | |
3166 | (define-public r-extradistr | |
3167 | (package | |
3168 | (name "r-extradistr") | |
8d2f8aed | 3169 | (version "1.8.9") |
19da7fe3 RW |
3170 | (source |
3171 | (origin | |
3172 | (method url-fetch) | |
3173 | (uri (cran-uri "extraDistr" version)) | |
3174 | (sha256 | |
3175 | (base32 | |
8d2f8aed | 3176 | "1fg8vjpal33y51iqzglk1yvy46d7js0l0wfbdy698lq8a06hq19p")))) |
19da7fe3 RW |
3177 | (properties `((upstream-name . "extraDistr"))) |
3178 | (build-system r-build-system) | |
3179 | (propagated-inputs | |
3180 | `(("r-rcpp" ,r-rcpp))) | |
3181 | (home-page "https://github.com/twolodzko/extraDistr") | |
3182 | (synopsis "Additional univariate and multivariate distributions") | |
3183 | (description | |
3184 | "This package implements density, distribution functions, quantile | |
3185 | functions and random generation functions for a large number of univariate and | |
3186 | multivariate distributions.") | |
3187 | (license license:gpl2))) | |
5b25bc55 RW |
3188 | |
3189 | (define-public r-fractal | |
3190 | (package | |
3191 | (name "r-fractal") | |
3192 | (version "2.0-4") | |
3193 | (source | |
3194 | (origin | |
3195 | (method url-fetch) | |
3196 | (uri (cran-uri "fractal" version)) | |
3197 | (sha256 | |
3198 | (base32 | |
3199 | "18lr9z0gslvfc3z8vyj3krqj3bfhg60zv1fzinrwwkc4cpk1w7mp")))) | |
3200 | (build-system r-build-system) | |
3201 | (propagated-inputs | |
3202 | `(("r-ifultools" ,r-ifultools) | |
3203 | ("r-mass" ,r-mass) | |
3204 | ("r-sapa" ,r-sapa) | |
3205 | ("r-scatterplot3d" ,r-scatterplot3d) | |
3206 | ("r-splus2r" ,r-splus2r) | |
3207 | ("r-wmtsa" ,r-wmtsa))) | |
d062957a | 3208 | (home-page "https://cran.r-project.org/web/packages/fractal/") |
5b25bc55 RW |
3209 | (synopsis "Fractal time series modeling and analysis") |
3210 | (description | |
3211 | "This package provides tools for stochastic fractal and deterministic | |
3212 | chaotic time series analysis.") | |
3213 | (license license:gpl2))) | |
6615a364 RW |
3214 | |
3215 | (define-public r-urca | |
3216 | (package | |
3217 | (name "r-urca") | |
3218 | (version "1.3-0") | |
3219 | (source | |
3220 | (origin | |
3221 | (method url-fetch) | |
3222 | (uri (cran-uri "urca" version)) | |
3223 | (sha256 | |
3224 | (base32 | |
3225 | "1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732")))) | |
3226 | (build-system r-build-system) | |
3227 | (propagated-inputs `(("r-nlme" ,r-nlme))) | |
3228 | (native-inputs `(("gfortran" ,gfortran))) | |
d062957a | 3229 | (home-page "https://cran.r-project.org/web/packages/urca/") |
6615a364 RW |
3230 | (synopsis "Unit root and cointegration tests for time series data") |
3231 | (description | |
3232 | "This package provides unit root and cointegration tests encountered in | |
3233 | applied econometric analysis.") | |
3234 | (license license:gpl2+))) | |
d32e5724 RW |
3235 | |
3236 | (define-public r-cubature | |
3237 | (package | |
3238 | (name "r-cubature") | |
752ff6e9 | 3239 | (version "1.4") |
d32e5724 RW |
3240 | (source |
3241 | (origin | |
3242 | (method url-fetch) | |
3243 | (uri (cran-uri "cubature" version)) | |
3244 | (sha256 | |
3245 | (base32 | |
752ff6e9 | 3246 | "1hd23b8v2kpqp5gr0va8p2q7j8w9rik6ks7zrr4b8mb2mwrakk74")))) |
d32e5724 RW |
3247 | (build-system r-build-system) |
3248 | (propagated-inputs | |
3249 | `(("r-rcpp" ,r-rcpp))) | |
3250 | (home-page "https://github.com/bnaras/cubature") | |
3251 | (synopsis "Adaptive multivariate integration over hypercubes") | |
3252 | (description | |
3253 | "This package is an R wrapper around the cubature C library for adaptive | |
3254 | multivariate integration over hypercubes. This version provides both | |
3255 | @code{hcubature} and @code{pcubature} routines in addition to a vector | |
3256 | interface.") | |
3257 | ;; The included cubature C library is released under GPLv2+, but the | |
3258 | ;; wrapper declares the license to be GPLv3+. | |
3259 | (license (list license:gpl2+ license:gpl3+)))) | |
7531ee84 RW |
3260 | |
3261 | (define-public r-trend | |
3262 | (package | |
3263 | (name "r-trend") | |
cd4abb6d | 3264 | (version "1.1.1") |
7531ee84 RW |
3265 | (source |
3266 | (origin | |
3267 | (method url-fetch) | |
3268 | (uri (cran-uri "trend" version)) | |
3269 | (sha256 | |
3270 | (base32 | |
cd4abb6d | 3271 | "1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q")))) |
7531ee84 RW |
3272 | (build-system r-build-system) |
3273 | (propagated-inputs | |
3274 | `(("r-extradistr" ,r-extradistr))) | |
3275 | (native-inputs | |
3276 | `(("gfortran" ,gfortran))) | |
d062957a | 3277 | (home-page "https://cran.r-project.org/web/packages/trend/") |
7531ee84 RW |
3278 | (synopsis "Non-parametric trend tests and change-point detection") |
3279 | (description | |
3280 | "The analysis of environmental data often requires the detection of | |
3281 | trends and change-points. This package includes tests for trend | |
3282 | detection (Cox-Stuart Trend Test, Mann-Kendall Trend Test, (correlated) | |
3283 | Hirsch-Slack Test, partial Mann-Kendall Trend Test, multivariate (multisite) | |
3284 | Mann-Kendall Trend Test, (Seasonal) Sen's slope, partial Pearson and Spearman | |
3285 | correlation trend test), change-point detection (Lanzante's test procedures, | |
3286 | Pettitt's test, Buishand Range Test, Buishand U Test, Standard Normal | |
3287 | Homogeinity Test), detection of non-randomness (Wallis-Moore Phase Frequency | |
3288 | Test, Bartels rank von Neumann's ratio test, Wald-Wolfowitz Test) and the two | |
3289 | sample Robust Rank-Order Distributional Test.") | |
3290 | (license license:gpl3))) | |
f96eda90 RW |
3291 | |
3292 | (define-public r-expm | |
3293 | (package | |
3294 | (name "r-expm") | |
3295 | (version "0.999-2") | |
3296 | (source | |
3297 | (origin | |
3298 | (method url-fetch) | |
3299 | (uri (cran-uri "expm" version)) | |
3300 | (sha256 | |
3301 | (base32 | |
3302 | "1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q")))) | |
3303 | (build-system r-build-system) | |
3304 | (propagated-inputs `(("r-matrix" ,r-matrix))) | |
3305 | (native-inputs `(("gfortran" ,gfortran))) | |
d062957a | 3306 | (home-page "https://r-forge.r-project.org/projects/expm/") |
f96eda90 RW |
3307 | (synopsis "Tools for matrix exponentials and related quantities") |
3308 | (description | |
3309 | "This package provides tools for the computation of the matrix | |
3310 | exponential, logarithm, square root, and related quantities.") | |
3311 | (license license:gpl2+))) | |
68b6a67e RW |
3312 | |
3313 | (define-public r-complexplus | |
3314 | (package | |
3315 | (name "r-complexplus") | |
3316 | (version "2.1") | |
3317 | (source | |
3318 | (origin | |
3319 | (method url-fetch) | |
3320 | (uri (cran-uri "complexplus" version)) | |
3321 | (sha256 | |
3322 | (base32 | |
3323 | "16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx")))) | |
3324 | (build-system r-build-system) | |
3325 | (propagated-inputs | |
3326 | `(("r-expm" ,r-expm) | |
3327 | ("r-matrix" ,r-matrix))) | |
d062957a | 3328 | (home-page "https://cran.r-project.org/web/packages/complexplus/") |
68b6a67e RW |
3329 | (synopsis "Functions of complex or real variables") |
3330 | (description | |
3331 | "This package extends several functions to the complex domain, including | |
3332 | the matrix exponential and logarithm, and the determinant.") | |
3333 | (license license:gpl2))) | |
7b81a7ea RW |
3334 | |
3335 | (define-public r-phontools | |
3336 | (package | |
3337 | (name "r-phontools") | |
3338 | (version "0.2-2.1") | |
3339 | (source | |
3340 | (origin | |
3341 | (method url-fetch) | |
3342 | (uri (cran-uri "phonTools" version)) | |
3343 | (sha256 | |
3344 | (base32 | |
3345 | "01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7")))) | |
3346 | (properties `((upstream-name . "phonTools"))) | |
3347 | (build-system r-build-system) | |
3348 | (home-page "http://www.santiagobarreda.com/rscripts.html") | |
3349 | (synopsis "Tools for phonetic and acoustic analyses") | |
3350 | (description | |
3351 | "This package contains tools for the organization, display, and analysis | |
3352 | of the sorts of data frequently encountered in phonetics research and | |
3353 | experimentation, including the easy creation of IPA vowel plots, and the | |
3354 | creation and manipulation of WAVE audio files.") | |
3355 | (license license:bsd-2))) | |
d976454c RW |
3356 | |
3357 | (define-public r-np | |
3358 | (package | |
3359 | (name "r-np") | |
c9a879ed | 3360 | (version "0.60-8") |
d976454c RW |
3361 | (source |
3362 | (origin | |
3363 | (method url-fetch) | |
3364 | (uri (cran-uri "np" version)) | |
3365 | (sha256 | |
3366 | (base32 | |
c9a879ed | 3367 | "17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j")))) |
d976454c RW |
3368 | (build-system r-build-system) |
3369 | (propagated-inputs | |
3370 | `(("r-boot" ,r-boot) | |
3371 | ("r-cubature" ,r-cubature) | |
65d66b3e | 3372 | ("r-quadprog" ,r-quadprog) |
d976454c RW |
3373 | ("r-quantreg" ,r-quantreg))) |
3374 | (home-page "https://github.com/JeffreyRacine/R-Package-np") | |
3375 | (synopsis "Non-parametric kernel smoothing methods for mixed data types") | |
3376 | (description "This package provides non-parametric (and semi-parametric) | |
3377 | kernel methods that seamlessly handle a mix of continuous, unordered, and | |
3378 | ordered factor data types.") | |
3379 | ;; Any version of the GPL. | |
3380 | (license license:gpl3+))) | |
2a112be0 RW |
3381 | |
3382 | (define-public r-powerplus | |
3383 | (package | |
3384 | (name "r-powerplus") | |
3385 | (version "3.1") | |
3386 | (source | |
3387 | (origin | |
3388 | (method url-fetch) | |
3389 | (uri (cran-uri "powerplus" version)) | |
3390 | (sha256 | |
3391 | (base32 | |
3392 | "0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn")))) | |
3393 | (build-system r-build-system) | |
3394 | (propagated-inputs | |
3395 | `(("r-complexplus" ,r-complexplus) | |
3396 | ("r-expm" ,r-expm) | |
3397 | ("r-mass" ,r-mass) | |
3398 | ("r-matrix" ,r-matrix) | |
3399 | ("r-phontools" ,r-phontools))) | |
d062957a | 3400 | (home-page "https://cran.r-project.org/web/packages/powerplus/") |
2a112be0 RW |
3401 | (synopsis "Exponentiation operations") |
3402 | (description | |
3403 | "This package provides tools for the computation of matrix and scalar | |
3404 | exponentiation.") | |
3405 | (license license:gpl2))) | |
021caafa RW |
3406 | |
3407 | (define-public r-heatmaply | |
3408 | (package | |
3409 | (name "r-heatmaply") | |
19950821 | 3410 | (version "0.15.2") |
021caafa RW |
3411 | (source |
3412 | (origin | |
3413 | (method url-fetch) | |
3414 | (uri (cran-uri "heatmaply" version)) | |
3415 | (sha256 | |
3416 | (base32 | |
19950821 | 3417 | "0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04")))) |
021caafa RW |
3418 | (build-system r-build-system) |
3419 | (propagated-inputs | |
3420 | `(("r-assertthat" ,r-assertthat) | |
3421 | ("r-colorspace" ,r-colorspace) | |
3422 | ("r-dendextend" ,r-dendextend) | |
3423 | ("r-ggplot2" ,r-ggplot2) | |
3424 | ("r-gplots" ,r-gplots) | |
3425 | ("r-htmlwidgets" ,r-htmlwidgets) | |
d0f34274 | 3426 | ("r-knitr" ,r-knitr) ; needed for vignettes |
021caafa RW |
3427 | ("r-magrittr" ,r-magrittr) |
3428 | ("r-plotly" ,r-plotly) | |
3429 | ("r-rcolorbrewer" ,r-rcolorbrewer) | |
3430 | ("r-reshape2" ,r-reshape2) | |
3431 | ("r-scales" ,r-scales) | |
3432 | ("r-seriation" ,r-seriation) | |
3433 | ("r-viridis" ,r-viridis) | |
3434 | ("r-webshot" ,r-webshot))) | |
3435 | (home-page "https://cran.r-project.org/package=heatmaply") | |
3436 | (synopsis "Interactive cluster heat maps using plotly") | |
3437 | (description | |
3438 | "This package enables you to create interactive cluster heatmaps that can | |
3439 | be saved as a stand-alone HTML file, embedded in R Markdown documents or in a | |
3440 | Shiny app, and made available in the RStudio viewer pane. Hover the mouse | |
3441 | pointer over a cell to show details or drag a rectangle to zoom. A heatmap is | |
3442 | a popular graphical method for visualizing high-dimensional data, in which a | |
3443 | table of numbers is encoded as a grid of colored cells. The rows and columns | |
3444 | of the matrix are ordered to highlight patterns and are often accompanied by | |
3445 | dendrograms.") | |
3446 | ;; Either version of the license. | |
3447 | (license (list license:gpl2 license:gpl3)))) | |
b2dc4cb4 RW |
3448 | |
3449 | (define-public r-cgdsr | |
3450 | (package | |
3451 | (name "r-cgdsr") | |
3452 | (version "1.2.10") | |
3453 | (source | |
3454 | (origin | |
3455 | (method url-fetch) | |
3456 | (uri (cran-uri "cgdsr" version)) | |
3457 | (sha256 | |
3458 | (base32 | |
3459 | "1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23")))) | |
3460 | (build-system r-build-system) | |
3461 | (propagated-inputs | |
3462 | `(("r-r-methodss3" ,r-r-methodss3) | |
3463 | ("r-r-oo" ,r-r-oo))) | |
3464 | (home-page "https://github.com/cBioPortal/cgdsr") | |
3465 | (synopsis "R-based API for accessing the MSKCC Cancer Genomics Data Server") | |
3466 | (description | |
3467 | "This package provides a basic set of R functions for querying the Cancer | |
3468 | Genomics Data Server (CGDS), hosted by the Computational Biology Center at | |
3469 | Memorial-Sloan-Kettering Cancer Center (MSKCC).") | |
3470 | (license license:lgpl3))) | |
a00968b7 RW |
3471 | |
3472 | (define-public r-import | |
3473 | (package | |
3474 | (name "r-import") | |
3475 | (version "1.1.0") | |
3476 | (source | |
3477 | (origin | |
3478 | (method url-fetch) | |
3479 | (uri (cran-uri "import" version)) | |
3480 | (sha256 | |
3481 | (base32 | |
3482 | "0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji")))) | |
3483 | (build-system r-build-system) | |
3484 | (home-page "https://github.com/smbache/import") | |
3485 | (synopsis "Import mechanism for R") | |
3486 | (description | |
3487 | "This is an alternative mechanism for importing objects from packages. | |
3488 | The syntax allows for importing multiple objects from a package with a single | |
3489 | command in an expressive way. The import package bridges some of the gap | |
3490 | between using @code{library} (or @code{require}) and direct (single-object) | |
3491 | imports. Furthermore the imported objects are not placed in the current | |
3492 | environment. It is also possible to import objects from stand-alone @code{.R} | |
3493 | files.") | |
3494 | (license license:expat))) | |
5d9b82ac RW |
3495 | |
3496 | (define-public r-shinyace | |
3497 | (package | |
3498 | (name "r-shinyace") | |
e86d3cc5 | 3499 | (version "0.3.1") |
5d9b82ac RW |
3500 | (source |
3501 | (origin | |
3502 | (method url-fetch) | |
3503 | (uri (cran-uri "shinyAce" version)) | |
3504 | (sha256 | |
3505 | (base32 | |
e86d3cc5 | 3506 | "1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb")))) |
5d9b82ac RW |
3507 | (properties `((upstream-name . "shinyAce"))) |
3508 | (build-system r-build-system) | |
3509 | (propagated-inputs | |
e86d3cc5 RW |
3510 | `(("r-shiny" ,r-shiny) |
3511 | ("r-jsonlite" ,r-jsonlite))) | |
5d9b82ac RW |
3512 | (home-page "http://cran.r-project.org/web/packages/shinyAce") |
3513 | (synopsis "Ace editor bindings for Shiny") | |
3514 | (description | |
3515 | "This package provides Ace editor bindings to enable a rich text editing | |
3516 | environment within Shiny.") | |
3517 | (license license:expat))) | |
f64fea1d RW |
3518 | |
3519 | (define-public r-radiant-data | |
3520 | (package | |
3521 | (name "r-radiant-data") | |
36dc3591 | 3522 | (version "0.9.5") |
f64fea1d RW |
3523 | (source |
3524 | (origin | |
3525 | (method url-fetch) | |
3526 | (uri (cran-uri "radiant.data" version)) | |
3527 | (sha256 | |
3528 | (base32 | |
36dc3591 | 3529 | "0mbxfqn79nphii4hb6kxl2wc0w0ra16y378rp2yw9a9926zdb7mb")) |
f64fea1d RW |
3530 | (modules '((guix build utils))) |
3531 | (snippet | |
3532 | '(begin | |
3533 | ;; Delete files that are under CC-NC-SA. | |
3534 | (delete-file-recursively "inst/app/tools/help") | |
3535 | #t)))) | |
3536 | (properties `((upstream-name . "radiant.data"))) | |
3537 | (build-system r-build-system) | |
3538 | (propagated-inputs | |
3539 | `(("r-base64enc" ,r-base64enc) | |
3540 | ("r-broom" ,r-broom) | |
3541 | ("r-car" ,r-car) | |
3542 | ("r-curl" ,r-curl) | |
3543 | ("r-dplyr" ,r-dplyr) | |
3544 | ("r-dt" ,r-dt) | |
36dc3591 | 3545 | ("r-glue" ,r-glue) |
f64fea1d RW |
3546 | ("r-ggplot2" ,r-ggplot2) |
3547 | ("r-gridextra" ,r-gridextra) | |
3548 | ("r-import" ,r-import) | |
3549 | ("r-jsonlite" ,r-jsonlite) | |
3550 | ("r-knitr" ,r-knitr) | |
3551 | ("r-lubridate" ,r-lubridate) | |
3552 | ("r-magrittr" ,r-magrittr) | |
3553 | ("r-markdown" ,r-markdown) | |
36dc3591 | 3554 | ("r-plotly" ,r-plotly) |
f64fea1d RW |
3555 | ("r-psych" ,r-psych) |
3556 | ("r-readr" ,r-readr) | |
36dc3591 RW |
3557 | ("r-readxl" ,r-readxl) |
3558 | ("r-rlang" ,r-rlang) | |
f64fea1d RW |
3559 | ("r-rmarkdown" ,r-rmarkdown) |
3560 | ("r-rstudioapi" ,r-rstudioapi) | |
3561 | ("r-scales" ,r-scales) | |
3562 | ("r-shiny" ,r-shiny) | |
3563 | ("r-shinyace" ,r-shinyace) | |
3564 | ("r-tibble" ,r-tibble) | |
36dc3591 RW |
3565 | ("r-tidyr" ,r-tidyr) |
3566 | ("r-writexl" ,r-writexl))) | |
f64fea1d RW |
3567 | (home-page "https://github.com/radiant-rstats/radiant.data") |
3568 | (synopsis "Data menu for Radiant: business analytics using R and Shiny") | |
3569 | (description | |
3570 | "The Radiant Data menu includes interfaces for loading, saving, viewing, | |
3571 | visualizing, summarizing, transforming, and combining data. It also contains | |
3572 | functionality to generate reproducible reports of the analyses conducted in | |
3573 | the application.") | |
3574 | (license license:agpl3))) | |
e2cafc24 RW |
3575 | |
3576 | (define-public r-algdesign | |
3577 | (package | |
3578 | (name "r-algdesign") | |
3579 | (version "1.1-7.3") | |
3580 | (source | |
3581 | (origin | |
3582 | (method url-fetch) | |
3583 | (uri (cran-uri "AlgDesign" version)) | |
3584 | (sha256 | |
3585 | (base32 | |
3586 | "0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz")))) | |
3587 | (properties `((upstream-name . "AlgDesign"))) | |
3588 | (build-system r-build-system) | |
3589 | (home-page "https://github.com/jvbraun/AlgDesign") | |
3590 | (synopsis "Algorithmic experimental design") | |
3591 | (description | |
3592 | "This package provides tools to calculate exact and approximate theory | |
3593 | experimental designs for D, A, and I criteria. Very large designs may be | |
3594 | created. Experimental designs may be blocked or blocked designs created from | |
3595 | a candidate list, using several criteria. The blocking can be done when whole | |
3596 | and within plot factors interact.") | |
3597 | (license license:gpl2+))) | |
35b0c051 RW |
3598 | |
3599 | (define-public r-signal | |
3600 | (package | |
3601 | (name "r-signal") | |
3602 | (version "0.7-6") | |
3603 | (source | |
3604 | (origin | |
3605 | (method url-fetch) | |
3606 | (uri (cran-uri "signal" version)) | |
3607 | (sha256 | |
3608 | (base32 | |
3609 | "1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b")))) | |
3610 | (build-system r-build-system) | |
3611 | (propagated-inputs `(("r-mass" ,r-mass))) | |
3612 | (native-inputs `(("gfortran" ,gfortran))) | |
d062957a | 3613 | (home-page "https://cran.r-project.org/web/packages/signal/") |
35b0c051 RW |
3614 | (synopsis "Signal processing") |
3615 | (description | |
3616 | "This package provides a set of signal processing functions originally | |
3617 | written for Matlab and GNU Octave. It includes filter generation utilities, | |
3618 | filtering functions, resampling routines, and visualization of filter models. | |
3619 | It also includes interpolation functions.") | |
3620 | (license license:gpl2))) | |
db80dd4a | 3621 | |
3dab50d9 RW |
3622 | (define-public r-gsubfn |
3623 | (package | |
3624 | (name "r-gsubfn") | |
2acc0e5f | 3625 | (version "0.7") |
3dab50d9 RW |
3626 | (source |
3627 | (origin | |
3628 | (method url-fetch) | |
3629 | (uri (cran-uri "gsubfn" version)) | |
3630 | (sha256 | |
3631 | (base32 | |
2acc0e5f | 3632 | "00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9")))) |
3dab50d9 RW |
3633 | (build-system r-build-system) |
3634 | (propagated-inputs `(("r-proto" ,r-proto))) | |
3635 | (home-page "http://gsubfn.googlecode.com") | |
3636 | (synopsis "Utilities for strings and function arguments.") | |
3637 | (description | |
3638 | "This package provides @code{gsubfn} which is like @code{gsub} but can | |
3639 | take a replacement function or certain other objects instead of the | |
3640 | replacement string. Matches and back references are input to the replacement | |
3641 | function and replaced by the function output. @code{gsubfn} can be used to | |
3642 | split strings based on content rather than delimiters and for quasi-perl-style | |
3643 | string interpolation. The package also has facilities for translating | |
3644 | formulas to functions and allowing such formulas in function calls instead of | |
3645 | functions.") | |
3646 | (license license:gpl2+))) | |
3a563a41 RW |
3647 | |
3648 | (define-public r-sqldf | |
3649 | (package | |
3650 | (name "r-sqldf") | |
3651 | (version "0.4-11") | |
3652 | (source | |
3653 | (origin | |
3654 | (method url-fetch) | |
3655 | (uri (cran-uri "sqldf" version)) | |
3656 | (sha256 | |
3657 | (base32 | |
3658 | "0q12vsb53p2wchgp8wfz5bk08wfnm0jxjrakclj4jyy6x3a7ksff")))) | |
3659 | (build-system r-build-system) | |
3660 | (propagated-inputs | |
3661 | `(("r-chron" ,r-chron) | |
3662 | ("r-dbi" ,r-dbi) | |
3663 | ("r-gsubfn" ,r-gsubfn) | |
3664 | ("r-proto" ,r-proto) | |
3665 | ("r-rsqlite" ,r-rsqlite))) | |
3666 | (home-page "https://github.com/ggrothendieck/sqldf") | |
3667 | (synopsis "Manipulate R data frames using SQL") | |
3668 | (description | |
3669 | "The @code{sqldf} function is typically passed a single argument which is | |
3670 | an SQL select statement where the table names are ordinary R data frame names. | |
3671 | @code{sqldf} transparently sets up a database, imports the data frames into | |
3672 | that database, performs the SQL statement and returns the result using a | |
3673 | heuristic to determine which class to assign to each column of the returned | |
3674 | data frame. The @code{sqldf} or @code{read.csv.sql} functions can also be | |
3675 | used to read filtered files into R even if the original files are larger than | |
3676 | R itself can handle.") | |
3677 | (license license:gpl2))) | |
94e46cab RW |
3678 | |
3679 | (define-public r-abind | |
3680 | (package | |
3681 | (name "r-abind") | |
3682 | (version "1.4-5") | |
3683 | (source | |
3684 | (origin | |
3685 | (method url-fetch) | |
3686 | (uri (cran-uri "abind" version)) | |
3687 | (sha256 | |
3688 | (base32 | |
3689 | "0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis")))) | |
3690 | (build-system r-build-system) | |
d062957a | 3691 | (home-page "https://cran.r-project.org/web/packages/abind/") |
94e46cab RW |
3692 | (synopsis "Combine multidimensional arrays") |
3693 | (description | |
3694 | "This package provides tools to combine multidimensional arrays into a | |
3695 | single array. This is a generalization of @code{cbind} and @code{rbind}. It | |
3696 | works with vectors, matrices, and higher-dimensional arrays. It also provides | |
3697 | the functions @code{adrop}, @code{asub}, and @code{afill} for manipulating, | |
3698 | extracting and replacing data in arrays.") | |
3699 | (license license:lgpl2.0+))) | |
fc784b66 RW |
3700 | |
3701 | (define-public r-prroc | |
3702 | (package | |
3703 | (name "r-prroc") | |
0430eb66 | 3704 | (version "1.3.1") |
fc784b66 RW |
3705 | (source |
3706 | (origin | |
3707 | (method url-fetch) | |
3708 | (uri (cran-uri "PRROC" version)) | |
3709 | (sha256 | |
3710 | (base32 | |
0430eb66 | 3711 | "1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7")))) |
fc784b66 RW |
3712 | (properties `((upstream-name . "PRROC"))) |
3713 | (build-system r-build-system) | |
d062957a | 3714 | (home-page "https://cran.r-project.org/web/packages/PRROC/") |
fc784b66 RW |
3715 | (synopsis "Precision-Recall and ROC curves for weighted and unweighted data") |
3716 | (description | |
3717 | "This package computes the areas under the @dfn{precision-recall} (PR) | |
3718 | and ROC curve for weighted (e.g. soft-labeled) and unweighted data. In | |
3719 | contrast to other implementations, the interpolation between points of the PR | |
3720 | curve is done by a non-linear piecewise function. In addition to the areas | |
3721 | under the curves, the curves themselves can also be computed and plotted by a | |
3722 | specific S3-method.") | |
3723 | (license license:gpl3))) | |
661bb51e RW |
3724 | |
3725 | (define-public r-vim | |
3726 | (package | |
3727 | (name "r-vim") | |
3728 | (version "4.7.0") | |
3729 | (source | |
3730 | (origin | |
3731 | (method url-fetch) | |
3732 | (uri (cran-uri "VIM" version)) | |
3733 | (sha256 | |
3734 | (base32 | |
3735 | "1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd")))) | |
3736 | (properties `((upstream-name . "VIM"))) | |
3737 | (build-system r-build-system) | |
3738 | (propagated-inputs | |
3739 | `(("r-car" ,r-car) | |
3740 | ("r-colorspace" ,r-colorspace) | |
3741 | ("r-data-table" ,r-data-table) | |
3742 | ("r-e1071" ,r-e1071) | |
3743 | ("r-laeken" ,r-laeken) | |
3744 | ("r-mass" ,r-mass) | |
3745 | ("r-nnet" ,r-nnet) | |
3746 | ("r-rcpp" ,r-rcpp) | |
3747 | ("r-robustbase" ,r-robustbase) | |
3748 | ("r-sp" ,r-sp) | |
3749 | ("r-vcd" ,r-vcd))) | |
3750 | (home-page "https://github.com/alexkowa/VIM") | |
3751 | (synopsis "Visualization and imputation of missing values") | |
3752 | (description | |
3753 | "This package provides tools for the visualization of missing and/or | |
3754 | imputed values are introduced, which can be used for exploring the data and | |
3755 | the structure of the missing and/or imputed values. Depending on this | |
3756 | structure of the missing values, the corresponding methods may help to | |
3757 | identify the mechanism generating the missing values and allows to explore the | |
3758 | data including missing values. In addition, the quality of imputation can be | |
3759 | visually explored using various univariate, bivariate, multiple and | |
3760 | multivariate plot methods.") | |
3761 | (license license:gpl2+))) | |
d10b0952 RW |
3762 | |
3763 | (define-public r-fnn | |
3764 | (package | |
3765 | (name "r-fnn") | |
7a96c4e0 | 3766 | (version "1.1.2.1") |
d10b0952 RW |
3767 | (source |
3768 | (origin | |
3769 | (method url-fetch) | |
3770 | (uri (cran-uri "FNN" version)) | |
3771 | (sha256 | |
3772 | (base32 | |
7a96c4e0 | 3773 | "1n61jrcmakqif8f827x4qnlhm2jqpj5fgjj65c4p0kdd8lzw8pqp")))) |
d10b0952 RW |
3774 | (properties `((upstream-name . "FNN"))) |
3775 | (build-system r-build-system) | |
1b5905fe | 3776 | (home-page "https://cran.r-project.org/web/packages/FNN") |
d10b0952 RW |
3777 | (synopsis "Fast nearest neighbor search algorithms and applications") |
3778 | (description | |
3779 | "This package provides cover-tree and kd-tree fast k-nearest neighbor | |
3780 | search algorithms. Related applications including KNN classification, | |
3781 | regression and information measures are implemented.") | |
3782 | ;; The DESCRIPTION file erroneously states that GPL version 2.1 or | |
3783 | ;; later can be used. | |
3784 | (license license:gpl2+))) | |
be815dbd RW |
3785 | |
3786 | (define-public r-smoother | |
3787 | (package | |
3788 | (name "r-smoother") | |
3789 | (version "1.1") | |
3790 | (source | |
3791 | (origin | |
3792 | (method url-fetch) | |
3793 | (uri (cran-uri "smoother" version)) | |
3794 | (sha256 | |
3795 | (base32 | |
3796 | "0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci")))) | |
3797 | (build-system r-build-system) | |
3798 | (propagated-inputs | |
3799 | `(("r-ttr" ,r-ttr))) | |
3800 | (home-page "http://cran.r-project.org/web/packages/smoother") | |
3801 | (synopsis "Functions relating to the smoothing of numerical data") | |
3802 | (description | |
3803 | "This package provides a collection of methods for smoothing numerical | |
3804 | data, commencing with a port of the Matlab gaussian window smoothing function. | |
3805 | In addition, several functions typically used in smoothing of financial data | |
3806 | are included.") | |
3807 | (license license:gpl2))) | |
0efd09ac RW |
3808 | |
3809 | (define-public r-riverplot | |
3810 | (package | |
3811 | (name "r-riverplot") | |
3812 | (version "0.6") | |
3813 | (source | |
3814 | (origin | |
3815 | (method url-fetch) | |
3816 | (uri (cran-uri "riverplot" version)) | |
3817 | (sha256 | |
3818 | (base32 | |
3819 | "0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z")))) | |
3820 | (build-system r-build-system) | |
3821 | (home-page "https://logfc.wordpress.com") | |
3822 | (synopsis "Sankey or ribbon plots") | |
3823 | (description | |
3824 | "Sankey plots are a type of diagram that is convenient to illustrate how | |
3825 | flow of information, resources etc. separates and joins, much like observing | |
3826 | how rivers split and merge. For example, they can be used to compare | |
3827 | different clusterings. This package provides an implementation of Sankey | |
3828 | plots for R.") | |
3829 | (license license:gpl2+))) | |
c56739df SY |
3830 | |
3831 | (define-public r-dyn | |
3832 | (package | |
3833 | (name "r-dyn") | |
3834 | (version "0.2-9.6") | |
3835 | (source | |
3836 | (origin | |
3837 | (method url-fetch) | |
3838 | (uri (cran-uri "dyn" version)) | |
3839 | (sha256 | |
3840 | (base32 | |
3841 | "16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb")))) | |
3842 | (build-system r-build-system) | |
3843 | (propagated-inputs | |
3844 | `(("r-zoo" ,r-zoo))) | |
3845 | (home-page "https://cran.r-project.org/web/packages/dyn") | |
3846 | (synopsis "Time series regression") | |
3847 | (description | |
3848 | "This package provides the dyn class interfaces @code{ts}, @code{irts}, | |
3849 | @code{zoo} and @code{zooreg} time series classes to @code{lm}, @code{glm}, | |
3850 | @code{loess}, @code{quantreg::rq}, @code{MASS::rlm}, | |
3851 | @code{MCMCpack::MCMCregress()}, @code{quantreg::rq()}, | |
3852 | @code{randomForest::randomForest()} and other regression functions, allowing | |
3853 | those functions to be used with time series including specifications that may | |
3854 | contain lags, diffs and missing values.") | |
3855 | ;; Any GPL version. | |
3856 | (license license:gpl2+))) | |
24fa6bca SY |
3857 | |
3858 | (define-public r-catdap | |
3859 | (package | |
3860 | (name "r-catdap") | |
3861 | (version "1.3.4") | |
3862 | (source | |
3863 | (origin | |
3864 | (method url-fetch) | |
3865 | (uri (cran-uri "catdap" version)) | |
3866 | (sha256 | |
3867 | (base32 | |
3868 | "0i877l61f6c75pczi235rzci67w29zv1d7z5zn5p5ymndclvlpl2")))) | |
3869 | (build-system r-build-system) | |
3870 | (native-inputs | |
3871 | `(("gfortran" ,gfortran))) | |
3872 | (home-page "https://cran.r-project.org/web/packages/catdap/") | |
3873 | (synopsis "Tools for categorical data analysis") | |
3874 | (description | |
3875 | "This package provides functions for analyzing multivariate data. | |
3876 | Dependencies of the distribution of the specified variable (response | |
3877 | variable) to other variables (explanatory variables) are derived and | |
3878 | evaluated by the @dfn{Akaike Information Criterion} (AIC).") | |
3879 | (license license:gpl2+))) | |
96e22362 SS |
3880 | |
3881 | (define-public r-arules | |
3882 | (package | |
3883 | (name "r-arules") | |
3b7999a7 | 3884 | (version "1.6-1") |
96e22362 SS |
3885 | (source |
3886 | (origin | |
3887 | (method url-fetch) | |
3888 | (uri (cran-uri "arules" version)) | |
3889 | (sha256 | |
3890 | (base32 | |
3b7999a7 | 3891 | "0glfqgxr87900kigmkby2ff7qrjvd6aq595q85y056i5ckjcp615")))) |
96e22362 SS |
3892 | (build-system r-build-system) |
3893 | (propagated-inputs | |
3894 | `(("r-matrix" ,r-matrix))) | |
3895 | (home-page "https://github.com/mhahsler/arules") | |
3896 | (synopsis "Mining association rules and frequent itemsets") | |
3897 | (description | |
3898 | "This package provides an infrastructure for representing, manipulating | |
3899 | and analyzing transaction data and patterns (frequent itemsets and association rules). | |
3900 | It also provides C implementations of the association mining algorithms Apriori | |
3901 | and Eclat.") | |
3902 | (license license:gpl3))) | |
1cde7467 KH |
3903 | |
3904 | (define-public r-parsedate | |
3905 | (package | |
3906 | (name "r-parsedate") | |
3907 | (version "1.1.3") | |
3908 | (source | |
3909 | (origin | |
3910 | (method url-fetch) | |
3911 | (uri (cran-uri "parsedate" version)) | |
3912 | (sha256 | |
3913 | (base32 | |
3914 | "0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002")))) | |
3915 | (build-system r-build-system) | |
3916 | (home-page "https://github.com/gaborcsardi/parsedate") | |
3917 | (synopsis | |
3918 | "Recognize and parse dates in various formats") | |
3919 | (description | |
3920 | "This package provides three functions for dealing with dates: | |
3921 | @code{parse_iso_8601} recognizes and parses all valid ISO 8601 date and | |
3922 | time formats, @code{parse_date} parses dates in unspecified formats, | |
3923 | and @code{format_iso_8601} formats a date in ISO 8601 format.") | |
3924 | (license license:gpl2))) | |
2a27c0bb SY |
3925 | |
3926 | (define-public r-abc-data | |
3927 | (package | |
3928 | (name "r-abc-data") | |
3929 | (version "1.0") | |
3930 | (source | |
3931 | (origin | |
3932 | (method url-fetch) | |
3933 | (uri (cran-uri "abc.data" version)) | |
3934 | (sha256 | |
3935 | (base32 | |
3936 | "1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj")))) | |
3937 | (properties `((upstream-name . "abc.data"))) | |
3938 | (build-system r-build-system) | |
3939 | (home-page "https://cran.r-project.org/web/packages/abc.data/") | |
3940 | (synopsis "Data for Approximate Bayesian Computation (ABC) package") | |
3941 | (description | |
3942 | "This package contains data which are used by functions of the abc | |
3943 | package which implements several @dfn{Approximate Bayesian Computation} (ABC) | |
3944 | algorithms for performing parameter estimation, model selection, and | |
3945 | goodness-of-fit.") | |
3946 | (license license:gpl3+))) | |
82c8e0ae SY |
3947 | |
3948 | (define-public r-abc | |
3949 | (package | |
3950 | (name "r-abc") | |
3951 | (version "2.1") | |
3952 | (source | |
3953 | (origin | |
3954 | (method url-fetch) | |
3955 | (uri (cran-uri "abc" version)) | |
3956 | (sha256 | |
3957 | (base32 | |
3958 | "0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb")))) | |
3959 | (build-system r-build-system) | |
3960 | (propagated-inputs | |
3961 | `(("r-abc-data" ,r-abc-data) | |
3962 | ("r-locfit" ,r-locfit) | |
3963 | ("r-mass" ,r-mass) | |
3964 | ("r-nnet" ,r-nnet) | |
3965 | ("r-quantreg" ,r-quantreg))) | |
3966 | (home-page "https://cran.r-project.org/web/packages/abc/") | |
3967 | (synopsis "Tools for Approximate Bayesian Computation (ABC)") | |
3968 | (description | |
3969 | "This package implements several @dfn{Approximate Bayesian | |
3970 | Computation} (ABC) algorithms for performing parameter estimation, model | |
3971 | selection, and goodness-of-fit. Cross-validation tools are also available for | |
3972 | measuring the accuracy of ABC estimates, and to calculate the | |
3973 | misclassification probabilities of different models.") | |
3974 | (license license:gpl3+))) | |
4b1f7a3e | 3975 | |
d182828f RW |
3976 | (define-public r-zip |
3977 | (package | |
3978 | (name "r-zip") | |
3979 | (version "1.0.0") | |
3980 | (source | |
3981 | (origin | |
3982 | (method url-fetch) | |
3983 | (uri (cran-uri "zip" version)) | |
3984 | (sha256 | |
3985 | (base32 | |
3986 | "0rgr9pcdhdq3k8n29h2ircp3ri1ibhrx81gja1y7331v15xyrabg")))) | |
3987 | (build-system r-build-system) | |
3988 | (home-page "https://github.com/gaborcsardi/zip") | |
3989 | (synopsis "Cross-platform Zip compression") | |
3990 | (description | |
3991 | "This package provides a cross-platform Zip compression library for R. | |
3992 | It is a replacement for the @code{zip} function, that does not require any | |
3993 | additional external tools on any platform.") | |
3994 | (license license:cc0))) | |
3995 | ||
4b1f7a3e RW |
3996 | (define-public r-openxlsx |
3997 | (package | |
3998 | (name "r-openxlsx") | |
a8b4677b | 3999 | (version "4.1.0") |
4b1f7a3e RW |
4000 | (source |
4001 | (origin | |
4002 | (method url-fetch) | |
4003 | (uri (cran-uri "openxlsx" version)) | |
4004 | (sha256 | |
4005 | (base32 | |
a8b4677b | 4006 | "1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb")))) |
4b1f7a3e | 4007 | (build-system r-build-system) |
a8b4677b RW |
4008 | (propagated-inputs |
4009 | `(("r-rcpp" ,r-rcpp) | |
4010 | ("r-zip" ,r-zip))) | |
4b1f7a3e RW |
4011 | (home-page "https://github.com/awalker89/openxlsx") |
4012 | (synopsis "Read, write and edit XLSX files") | |
4013 | (description | |
4014 | "This package simplifies the creation of Excel @code{.xlsx} files by | |
4015 | providing a high level interface to writing, styling and editing worksheets. | |
4016 | Through the use of Rcpp, read/write times are comparable to the @code{xlsx} | |
4017 | and @code{XLConnect} packages with the added benefit of removing the | |
4018 | dependency on Java.") | |
4019 | (license license:gpl3))) | |
c9920f25 RW |
4020 | |
4021 | (define-public r-rio | |
4022 | (package | |
4023 | (name "r-rio") | |
4024 | (version "0.5.10") | |
4025 | (source | |
4026 | (origin | |
4027 | (method url-fetch) | |
4028 | (uri (cran-uri "rio" version)) | |
4029 | (sha256 | |
4030 | (base32 | |
4031 | "158xg3vj0glk3fslwi6fywwmfym2b6kn3fdmjligdfy5lf68khix")))) | |
4032 | (build-system r-build-system) | |
4033 | (propagated-inputs | |
4034 | `(("r-curl" ,r-curl) | |
4035 | ("r-data-table" ,r-data-table) | |
4036 | ("r-foreign" ,r-foreign) | |
4037 | ("r-haven" ,r-haven) | |
4038 | ("r-openxlsx" ,r-openxlsx) | |
4039 | ("r-readxl" ,r-readxl) | |
4040 | ("r-tibble" ,r-tibble))) | |
4041 | (home-page "https://github.com/leeper/rio") | |
4042 | (synopsis "Swiss-army knife for data I/O") | |
4043 | (description | |
4044 | "This package provides streamlined data import and export infrastructure | |
4045 | by making assumptions that the user is probably willing to make: @code{import} | |
4046 | and @code{export} determine the data structure from the file extension, | |
4047 | reasonable defaults are used for data import and export (e.g., | |
4048 | @code{stringsAsFactors=FALSE}), web-based import is natively | |
4049 | supported (including from SSL/HTTPS), compressed files can be read directly | |
4050 | without explicit decompression, and fast import packages are used where | |
4051 | appropriate. An additional convenience function, @code{convert}, provides a | |
4052 | simple method for converting between file types.") | |
4053 | (license license:gpl2))) | |
08dac3d9 RW |
4054 | |
4055 | (define-public r-maptools | |
4056 | (package | |
4057 | (name "r-maptools") | |
12132229 | 4058 | (version "0.9-3") |
08dac3d9 RW |
4059 | (source |
4060 | (origin | |
4061 | (method url-fetch) | |
4062 | (uri (cran-uri "maptools" version)) | |
4063 | (sha256 | |
4064 | (base32 | |
12132229 | 4065 | "0hxbv01im9zk1qrwgigpc510w6x0kzdzip4gx2jzfqmmwr8m17r8")))) |
08dac3d9 RW |
4066 | (build-system r-build-system) |
4067 | (propagated-inputs | |
4068 | `(("r-foreign" ,r-foreign) | |
4069 | ("r-lattice" ,r-lattice) | |
4070 | ("r-sp" ,r-sp))) | |
4071 | (home-page "http://r-forge.r-project.org/projects/maptools/") | |
4072 | (synopsis "Tools for reading and handling spatial objects") | |
4073 | (description | |
4074 | "This package provides a set of tools for manipulating and reading | |
4075 | geographic data, in particular ESRI Shapefiles. It includes binary access to | |
4076 | GSHHG shoreline files. The package also provides interface wrappers for | |
4077 | exchanging spatial objects with other R packages.") | |
4078 | ;; The C source files from shapelib are released under the Expat license. | |
4079 | ;; The R code is released under GPL version 2 or later. | |
4080 | (license (list license:gpl2+ | |
4081 | license:expat)))) | |
284179bb RW |
4082 | |
4083 | (define-public r-later | |
4084 | (package | |
4085 | (name "r-later") | |
2e6909ba | 4086 | (version "0.7.4") |
284179bb RW |
4087 | (source |
4088 | (origin | |
4089 | (method url-fetch) | |
4090 | (uri (cran-uri "later" version)) | |
4091 | (sha256 | |
4092 | (base32 | |
2e6909ba | 4093 | "125zc499gj702x2bch95lsfzk2qb4dzv3604x9afym2i3ylrmm64")))) |
284179bb RW |
4094 | (build-system r-build-system) |
4095 | (propagated-inputs | |
4096 | `(("r-bh" ,r-bh) | |
4097 | ("r-rcpp" ,r-rcpp) | |
4098 | ("r-rlang" ,r-rlang))) | |
4099 | (home-page "https://github.com/r-lib/later") | |
4100 | (synopsis "Utilities for delaying function execution") | |
4101 | (description | |
4102 | "This package provides tools to execute arbitrary R or C functions some | |
4103 | time after the current time, after the R execution stack has emptied.") | |
4104 | (license license:gpl2+))) | |
d9d66ba9 RW |
4105 | |
4106 | (define-public r-promises | |
4107 | (package | |
4108 | (name "r-promises") | |
4109 | (version "1.0.1") | |
4110 | (source | |
4111 | (origin | |
4112 | (method url-fetch) | |
4113 | (uri (cran-uri "promises" version)) | |
4114 | (sha256 | |
4115 | (base32 | |
4116 | "0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2")))) | |
4117 | (build-system r-build-system) | |
4118 | (propagated-inputs | |
4119 | `(("r-later" ,r-later) | |
4120 | ("r-magrittr" ,r-magrittr) | |
4121 | ("r-r6" ,r-r6) | |
4122 | ("r-rcpp" ,r-rcpp) | |
4123 | ("r-rlang" ,r-rlang))) | |
4124 | (home-page "https://rstudio.github.io/promises") | |
4125 | (synopsis "Abstractions for promise-based asynchronous programming") | |
4126 | (description | |
4127 | "This package provides fundamental abstractions for doing asynchronous | |
4128 | programming in R using promises. Asynchronous programming is useful for | |
4129 | allowing a single R process to orchestrate multiple tasks in the background | |
4130 | while also attending to something else. Semantics are similar to JavaScript | |
4131 | promises, but with a syntax that is idiomatic R.") | |
4132 | (license license:expat))) | |
3cf9ae2f RW |
4133 | |
4134 | (define-public r-dosnow | |
4135 | (package | |
4136 | (name "r-dosnow") | |
4137 | (version "1.0.16") | |
4138 | (source | |
4139 | (origin | |
4140 | (method url-fetch) | |
4141 | (uri (cran-uri "doSNOW" version)) | |
4142 | (sha256 | |
4143 | (base32 | |
4144 | "13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n")))) | |
4145 | (properties `((upstream-name . "doSNOW"))) | |
4146 | (build-system r-build-system) | |
4147 | (propagated-inputs | |
4148 | `(("r-foreach" ,r-foreach) | |
4149 | ("r-iterators" ,r-iterators) | |
4150 | ("r-snow" ,r-snow))) | |
4151 | (home-page "https://cran.r-project.org/web/packages/doSNOW") | |
4152 | (synopsis "Foreach parallel adaptor for the snow package") | |
4153 | (description | |
4154 | "This package provides a parallel backend for the @code{%dopar%} function | |
4155 | using the @code{snow} package.") | |
4156 | (license license:gpl2))) | |
fdc3a05d RJ |
4157 | |
4158 | (define-public r-snowfall | |
4159 | (package | |
4160 | (name "r-snowfall") | |
4161 | (version "1.84-6.1") | |
4162 | (source (origin | |
4163 | (method url-fetch) | |
4164 | (uri (cran-uri "snowfall" version)) | |
4165 | (sha256 | |
4166 | (base32 "13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w")))) | |
4167 | (build-system r-build-system) | |
4168 | (propagated-inputs | |
4169 | `(("r-snow" ,r-snow))) | |
4170 | (home-page "http://cran.r-project.org/web/packages/snowfall/") | |
4171 | (synopsis "Easier cluster computing") | |
4172 | (description "This package is a usability wrapper around snow for easier | |
4173 | development of parallel R programs. This package offers e.g. extended error | |
4174 | checks, and additional functions. All functions work in sequential mode, too, | |
4175 | if no cluster is present or wished. The package is also designed as connector | |
4176 | to the cluster management tool @code{sfCluster}, but can also used without | |
4177 | it.") | |
4178 | (license license:gpl2+))) | |
e09d74ec | 4179 | |
94a8990f RW |
4180 | (define-public r-rappdirs |
4181 | (package | |
4182 | (name "r-rappdirs") | |
4183 | (version "0.3.1") | |
4184 | (source | |
4185 | (origin | |
4186 | (method url-fetch) | |
4187 | (uri (cran-uri "rappdirs" version)) | |
4188 | (sha256 | |
4189 | (base32 | |
4190 | "0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g")))) | |
4191 | (build-system r-build-system) | |
4192 | (home-page "https://cran.r-project.org/web/packages/rappdirs/") | |
4193 | (synopsis "Determine where to save data, caches, and logs") | |
4194 | (description | |
4195 | "This package provides an easy way to determine which directories on the | |
4196 | user's computer should be used to save data, caches and logs. It is a port of | |
4197 | Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") | |
4198 | (license license:expat))) | |
2b47ebe1 RW |
4199 | |
4200 | (define-public r-learnr | |
4201 | (package | |
4202 | (name "r-learnr") | |
7d0370ed | 4203 | (version "0.9.2.1") |
2b47ebe1 RW |
4204 | (source |
4205 | (origin | |
4206 | (method url-fetch) | |
4207 | (uri (cran-uri "learnr" version)) | |
4208 | (sha256 | |
4209 | (base32 | |
7d0370ed | 4210 | "0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5")))) |
2b47ebe1 RW |
4211 | (build-system r-build-system) |
4212 | (propagated-inputs | |
4213 | `(("r-evaluate" ,r-evaluate) | |
4214 | ("r-htmltools" ,r-htmltools) | |
4215 | ("r-htmlwidgets" ,r-htmlwidgets) | |
4216 | ("r-jsonlite" ,r-jsonlite) | |
4217 | ("r-knitr" ,r-knitr) | |
4218 | ("r-markdown" ,r-markdown) | |
4219 | ("r-rappdirs" ,r-rappdirs) | |
4220 | ("r-rmarkdown" ,r-rmarkdown) | |
4221 | ("r-rprojroot" ,r-rprojroot) | |
4222 | ("r-shiny" ,r-shiny) | |
4223 | ("r-withr" ,r-withr))) | |
4224 | (home-page "https://rstudio.github.io/learnr/") | |
4225 | (synopsis "Interactive tutorials for R") | |
4226 | (description | |
4227 | "This package provides tools to create interactive tutorials using R | |
4228 | Markdown. Use a combination of narrative, figures, videos, exercises, and | |
4229 | quizzes to create self-paced tutorials for learning about R and R packages.") | |
4230 | (license license:asl2.0))) | |
12591673 RW |
4231 | |
4232 | (define-public r-analytics | |
4233 | (package | |
4234 | (name "r-analytics") | |
4235 | (version "2.0") | |
4236 | (source | |
4237 | (origin | |
4238 | (method url-fetch) | |
4239 | (uri (cran-uri "analytics" version)) | |
4240 | (sha256 | |
4241 | (base32 | |
4242 | "1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6")))) | |
4243 | (build-system r-build-system) | |
4244 | (propagated-inputs | |
4245 | `(("r-car" ,r-car) | |
4246 | ("r-cluster" ,r-cluster) | |
4247 | ("r-fractal" ,r-fractal) | |
4248 | ("r-lmtest" ,r-lmtest) | |
4249 | ("r-mass" ,r-mass) | |
4250 | ("r-np" ,r-np) | |
4251 | ("r-powerplus" ,r-powerplus) | |
4252 | ("r-robust" ,r-robust) | |
4253 | ("r-trend" ,r-trend) | |
4254 | ("r-tsa" ,r-tsa) | |
4255 | ("r-urca" ,r-urca))) | |
4256 | (home-page "https://cran.r-project.org/web/packages/analytics/") | |
4257 | (synopsis "Collection of data analysis tools") | |
4258 | (description | |
4259 | "This package is a collection of data analysis tools. It includes tools | |
4260 | for regression outlier detection in a fitted linear model, stationary | |
4261 | bootstrap using a truncated geometric distribution, a comprehensive test for | |
4262 | weak stationarity, column means by group, weighted biplots, and a heuristic to | |
4263 | obtain a better initial configuration in non-metric MDS.") | |
4264 | (license license:gpl2))) | |
9f56ceec RW |
4265 | |
4266 | (define-public r-reticulate | |
4267 | (package | |
4268 | (name "r-reticulate") | |
2cdd9d4f | 4269 | (version "1.10") |
9f56ceec RW |
4270 | (source |
4271 | (origin | |
4272 | (method url-fetch) | |
4273 | (uri (cran-uri "reticulate" version)) | |
4274 | (sha256 | |
4275 | (base32 | |
2cdd9d4f | 4276 | "0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq")))) |
9f56ceec RW |
4277 | (build-system r-build-system) |
4278 | (inputs `(("python" ,python))) | |
4279 | (propagated-inputs | |
4280 | `(("r-jsonlite" ,r-jsonlite) | |
4281 | ("r-matrix" ,r-matrix) | |
4282 | ("r-rcpp" ,r-rcpp))) | |
4283 | (home-page "https://github.com/rstudio/reticulate") | |
4284 | (synopsis "R interface to Python") | |
4285 | (description | |
4286 | "This package provides an interface from R to Python modules, classes, | |
4287 | and functions. When calling into Python, R data types are automatically | |
4288 | converted to their equivalent Python types. When values are returned from | |
4289 | Python to R they are converted back to R types.") | |
4290 | (license license:asl2.0))) | |
11de8673 RW |
4291 | |
4292 | (define-public r-bibtex | |
4293 | (package | |
4294 | (name "r-bibtex") | |
4295 | (version "0.4.2") | |
4296 | (source | |
4297 | (origin | |
4298 | (method url-fetch) | |
4299 | (uri (cran-uri "bibtex" version)) | |
4300 | (sha256 | |
4301 | (base32 | |
4302 | "0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz")))) | |
4303 | (build-system r-build-system) | |
4304 | (propagated-inputs `(("r-stringr" ,r-stringr))) | |
4305 | (home-page "https://github.com/romainfrancois/bibtex") | |
4306 | (synopsis "Bibtex parser") | |
4307 | (description "This package provides a utility for R to parse a bibtex | |
4308 | file.") | |
4309 | (license license:gpl2+))) | |
e67acae7 RW |
4310 | |
4311 | (define-public r-ggseqlogo | |
4312 | (package | |
4313 | (name "r-ggseqlogo") | |
4314 | (version "0.1") | |
4315 | (source | |
4316 | (origin | |
4317 | (method url-fetch) | |
4318 | (uri (cran-uri "ggseqlogo" version)) | |
4319 | (sha256 | |
4320 | (base32 | |
4321 | "13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1")))) | |
4322 | (build-system r-build-system) | |
4323 | (propagated-inputs `(("r-ggplot2" ,r-ggplot2))) | |
4324 | (home-page "https://github.com/omarwagih/ggseqlogo") | |
4325 | (synopsis "ggplot2 extension for drawing genetic sequence logos") | |
4326 | (description | |
4327 | "The range of functions provided by this package makes it possible to | |
4328 | draw highly versatile genomic sequence logos. Features include, but are not | |
4329 | limited to, modifying colour schemes and fonts used to draw the logo, | |
4330 | generating multiple logo plots, and aiding the visualisation with annotations. | |
4331 | Sequence logos can easily be combined with other ggplot2 plots.") | |
4332 | ;; Unspecified version of the LGPL. | |
4333 | (license license:lgpl3+))) | |
85df1a86 RW |
4334 | |
4335 | (define-public r-ggsci | |
4336 | (package | |
4337 | (name "r-ggsci") | |
4338 | (version "2.9") | |
4339 | (source | |
4340 | (origin | |
4341 | (method url-fetch) | |
4342 | (uri (cran-uri "ggsci" version)) | |
4343 | (sha256 | |
4344 | (base32 | |
4345 | "0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa")))) | |
4346 | (build-system r-build-system) | |
4347 | (propagated-inputs | |
4348 | `(("r-ggplot2" ,r-ggplot2) | |
4349 | ("r-scales" ,r-scales))) | |
4350 | (home-page "https://nanx.me/ggsci/") | |
4351 | (synopsis "Scientific journal and sci-fi themed color palettes for ggplot2") | |
4352 | (description | |
4353 | "This package provides a collection of ggplot2 color palettes inspired by | |
4354 | plots in scientific journals, data visualization libraries, science fiction | |
4355 | movies, and TV shows.") | |
4356 | (license license:gpl3))) | |
5219c5c5 RW |
4357 | |
4358 | (define-public r-ggsignif | |
4359 | (package | |
4360 | (name "r-ggsignif") | |
4361 | (version "0.4.0") | |
4362 | (source | |
4363 | (origin | |
4364 | (method url-fetch) | |
4365 | (uri (cran-uri "ggsignif" version)) | |
4366 | (sha256 | |
4367 | (base32 | |
4368 | "1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7")))) | |
4369 | (build-system r-build-system) | |
4370 | (propagated-inputs | |
4371 | `(("r-ggplot2" ,r-ggplot2))) | |
4372 | (home-page "https://github.com/const-ae/ggsignif") | |
4373 | (synopsis "Significance brackets for ggplot2") | |
4374 | (description | |
4375 | "Enrich your ggplots with group-wise comparisons. This package provides | |
4376 | an easy way to indicate if two groups are significantly different. Commonly | |
4377 | this is shown by a bracket on top connecting the groups of interest which | |
4378 | itself is annotated with the level of significance. The package provides a | |
4379 | single layer that takes the groups for comparison and the test as arguments | |
4380 | and adds the annotation to the plot.") | |
4381 | (license license:gpl3))) | |
5cbaaee8 RW |
4382 | |
4383 | (define-public r-ggpubr | |
4384 | (package | |
4385 | (name "r-ggpubr") | |
caaec886 | 4386 | (version "0.1.8") |
5cbaaee8 RW |
4387 | (source |
4388 | (origin | |
4389 | (method url-fetch) | |
4390 | (uri (cran-uri "ggpubr" version)) | |
4391 | (sha256 | |
4392 | (base32 | |
caaec886 | 4393 | "0psl2zndm4wk6nnj1nv305islpxfvfgd87gjh2ph8yqn4mxpnfi1")))) |
5cbaaee8 RW |
4394 | (build-system r-build-system) |
4395 | (propagated-inputs | |
4396 | `(("r-cowplot" ,r-cowplot) | |
4397 | ("r-dplyr" ,r-dplyr) | |
4398 | ("r-ggplot2" ,r-ggplot2) | |
4399 | ("r-ggrepel" ,r-ggrepel) | |
4400 | ("r-ggsci" ,r-ggsci) | |
4401 | ("r-ggsignif" ,r-ggsignif) | |
caaec886 | 4402 | ("r-glue" ,r-glue) |
5cbaaee8 RW |
4403 | ("r-gridextra" ,r-gridextra) |
4404 | ("r-magrittr" ,r-magrittr) | |
caaec886 | 4405 | ("r-polynom" ,r-polynom) |
5cbaaee8 RW |
4406 | ("r-purrr" ,r-purrr) |
4407 | ("r-scales" ,r-scales) | |
4408 | ("r-tidyr" ,r-tidyr))) | |
4409 | (home-page "http://www.sthda.com/english/rpkgs/ggpubr") | |
4410 | (synopsis "ggplot2-based publication-ready plots") | |
4411 | (description | |
4412 | "The ggplot2 package is an excellent and flexible package for elegant | |
4413 | data visualization in R. However the default generated plots require some | |
4414 | formatting before we can send them for publication. The ggpubr package | |
4415 | provides some easy-to-use functions for creating and customizing ggplot2-based | |
4416 | publication-ready plots.") | |
4417 | (license license:gpl2))) | |
141e43bd RW |
4418 | |
4419 | (define-public r-ellipse | |
4420 | (package | |
4421 | (name "r-ellipse") | |
4422 | (version "0.4.1") | |
4423 | (source | |
4424 | (origin | |
4425 | (method url-fetch) | |
4426 | (uri (cran-uri "ellipse" version)) | |
4427 | (sha256 | |
4428 | (base32 | |
4429 | "0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs")))) | |
4430 | (build-system r-build-system) | |
4431 | (home-page "https://cran.r-project.org/web/packages/ellipse/") | |
4432 | (synopsis "Functions for drawing ellipses and ellipse-like confidence regions") | |
4433 | (description | |
4434 | "This package contains various routines for drawing ellipses and | |
4435 | ellipse-like confidence regions, implementing the plots described in Murdoch | |
4436 | and Chow (1996), A graphical display of large correlation matrices, The | |
4437 | American Statistician 50, 178-180. There are also routines implementing the | |
4438 | profile plots described in Bates and Watts (1988), Nonlinear Regression | |
4439 | Analysis and its Applications.") | |
4440 | (license license:gpl2+))) | |
cbf6017d RW |
4441 | |
4442 | (define-public r-flashclust | |
4443 | (package | |
4444 | (name "r-flashclust") | |
4445 | (version "1.01-2") | |
4446 | (source | |
4447 | (origin | |
4448 | (method url-fetch) | |
4449 | (uri (cran-uri "flashClust" version)) | |
4450 | (sha256 | |
4451 | (base32 | |
4452 | "0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8")))) | |
4453 | (properties `((upstream-name . "flashClust"))) | |
4454 | (build-system r-build-system) | |
4455 | (native-inputs `(("gfortran" ,gfortran))) | |
4456 | (home-page "https://cran.r-project.org/web/packages/flashClust/") | |
4457 | (synopsis "Implementation of optimal hierarchical clustering") | |
4458 | (description | |
4459 | "This package provides a fast implementation of hierarchical | |
4460 | clustering.") | |
4461 | (license license:gpl2+))) | |
e83841a2 RW |
4462 | |
4463 | (define-public r-factominer | |
4464 | (package | |
4465 | (name "r-factominer") | |
4466 | (version "1.41") | |
4467 | (source | |
4468 | (origin | |
4469 | (method url-fetch) | |
4470 | (uri (cran-uri "FactoMineR" version)) | |
4471 | (sha256 | |
4472 | (base32 | |
4473 | "1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259")))) | |
4474 | (properties `((upstream-name . "FactoMineR"))) | |
4475 | (build-system r-build-system) | |
4476 | (propagated-inputs | |
4477 | `(("r-car" ,r-car) | |
4478 | ("r-cluster" ,r-cluster) | |
4479 | ("r-ellipse" ,r-ellipse) | |
4480 | ("r-flashclust" ,r-flashclust) | |
4481 | ("r-lattice" ,r-lattice) | |
4482 | ("r-leaps" ,r-leaps) | |
4483 | ("r-mass" ,r-mass) | |
4484 | ("r-scatterplot3d" ,r-scatterplot3d))) | |
4485 | (home-page "http://factominer.free.fr") | |
4486 | (synopsis "Multivariate exploratory data analysis and data mining") | |
4487 | (description | |
4488 | "This package provides exploratory data analysis methods to summarize, | |
4489 | visualize and describe datasets. The main principal component methods are | |
4490 | available, those with the largest potential in terms of applications: | |
4491 | principal component analysis (PCA) when variables are quantitative, | |
4492 | correspondence analysis (CA) and multiple correspondence analysis (MCA) when | |
4493 | variables are categorical, Multiple Factor Analysis when variables are | |
4494 | structured in groups, etc. and hierarchical cluster analysis.") | |
4495 | (license license:gpl2+))) | |
f22bfee9 RW |
4496 | |
4497 | (define-public r-factoextra | |
4498 | (package | |
4499 | (name "r-factoextra") | |
4500 | (version "1.0.5") | |
4501 | (source | |
4502 | (origin | |
4503 | (method url-fetch) | |
4504 | (uri (cran-uri "factoextra" version)) | |
4505 | (sha256 | |
4506 | (base32 | |
4507 | "1l6m8k7qhdw8ndar8nhmym0lfyd1i2iszl1cicjax0vq23ss6xw1")))) | |
4508 | (build-system r-build-system) | |
4509 | (propagated-inputs | |
4510 | `(("r-abind" ,r-abind) | |
4511 | ("r-cluster" ,r-cluster) | |
4512 | ("r-dendextend" ,r-dendextend) | |
4513 | ("r-factominer" ,r-factominer) | |
4514 | ("r-ggplot2" ,r-ggplot2) | |
4515 | ("r-ggpubr" ,r-ggpubr) | |
4516 | ("r-ggrepel" ,r-ggrepel) | |
4517 | ("r-reshape2" ,r-reshape2) | |
4518 | ("r-tidyr" ,r-tidyr))) | |
4519 | (home-page "http://www.sthda.com/english/rpkgs/factoextra") | |
4520 | (synopsis "Extract and visualize the results of multivariate data analyses") | |
4521 | (description | |
4522 | "This package provides some easy-to-use functions to extract and | |
4523 | visualize the output of multivariate data analyses, including | |
6ccd88e8 RW |
4524 | @code{PCA} (Principal Component Analysis), @code{CA} (Correspondence |
4525 | Analysis), @code{MCA} (Multiple Correspondence Analysis), @code{FAMD} (Factor | |
4526 | Analysis of Mixed Data), @code{MFA} (Multiple Factor Analysis) and | |
f22bfee9 RW |
4527 | @code{HMFA} (Hierarchical Multiple Factor Analysis) functions from different R |
4528 | packages. It contains also functions for simplifying some clustering analysis | |
4529 | steps and provides ggplot2-based elegant data visualization.") | |
4530 | (license license:gpl2))) | |
0c9868aa | 4531 | |
356230da RW |
4532 | (define-public r-fansi |
4533 | (package | |
4534 | (name "r-fansi") | |
4535 | (version "0.3.0") | |
4536 | (source | |
4537 | (origin | |
4538 | (method url-fetch) | |
4539 | (uri (cran-uri "fansi" version)) | |
4540 | (sha256 | |
4541 | (base32 | |
4542 | "135qj7bcc3mwn0vg55hiiadf66lx6zaxvkicfmfw9x0zr7ah2r6x")))) | |
4543 | (build-system r-build-system) | |
4544 | (native-inputs | |
4545 | `(("r-knitr" ,r-knitr))) ; for vignettes | |
4546 | (home-page "https://github.com/brodieG/fansi") | |
4547 | (synopsis "ANSI control sequence aware string functions") | |
4548 | (description | |
4549 | "This package provides counterparts to R string manipulation functions | |
4550 | that account for the effects of ANSI text formatting control sequences.") | |
4551 | (license license:gpl2+))) | |
4552 | ||
0c9868aa RW |
4553 | (define-public r-nbclust |
4554 | (package | |
4555 | (name "r-nbclust") | |
4556 | (version "3.0") | |
4557 | (source | |
4558 | (origin | |
4559 | (method url-fetch) | |
4560 | (uri (cran-uri "NbClust" version)) | |
4561 | (sha256 | |
4562 | (base32 | |
4563 | "1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c")))) | |
4564 | (properties `((upstream-name . "NbClust"))) | |
4565 | (build-system r-build-system) | |
4566 | (home-page "https://sites.google.com/site/malikacharrad/research/nbclust-package") | |
4567 | (synopsis "Determine the best number of clusters in a data set") | |
4568 | (description | |
4569 | "NbClust provides 30 indexes for determining the optimal number of | |
4570 | clusters in a data set and offers the best clustering scheme from different | |
4571 | results to the user.") | |
4572 | (license license:gpl2))) | |
546fc4aa RW |
4573 | |
4574 | (define-public r-hdf5r | |
4575 | (package | |
4576 | (name "r-hdf5r") | |
4577 | (version "1.0.0") | |
4578 | (source | |
4579 | (origin | |
4580 | (method url-fetch) | |
4581 | (uri (cran-uri "hdf5r" version)) | |
4582 | (sha256 | |
4583 | (base32 | |
4584 | "1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva")))) | |
4585 | (build-system r-build-system) | |
4586 | (inputs | |
4587 | `(("hdf5" ,hdf5) | |
4588 | ("zlib" ,zlib))) | |
4589 | (propagated-inputs | |
4590 | `(("r-bit64" ,r-bit64) | |
4591 | ("r-r6" ,r-r6))) | |
4592 | (home-page "https://hhoeflin.github.io/hdf5r") | |
4593 | (synopsis "Interface to the HDF5 binary data format") | |
4594 | (description | |
4595 | "HDF5 is a data model, library and file format for storing and managing | |
4596 | large amounts of data. This package provides a nearly feature complete, | |
4597 | object oriented wrapper for the HDF5 API using R6 classes. Additionally, | |
4598 | functionality is added so that HDF5 objects behave very similar to their | |
4599 | corresponding R counterparts.") | |
4600 | (license license:asl2.0))) | |
846325a8 | 4601 | |
3568b823 RW |
4602 | (define-public r-itertools |
4603 | (package | |
4604 | (name "r-itertools") | |
4605 | (version "0.1-3") | |
4606 | (source | |
4607 | (origin | |
4608 | (method url-fetch) | |
4609 | (uri (cran-uri "itertools" version)) | |
4610 | (sha256 | |
4611 | (base32 | |
4612 | "1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn")))) | |
4613 | (build-system r-build-system) | |
4614 | (propagated-inputs | |
4615 | `(("r-iterators" ,r-iterators))) | |
4616 | (home-page "https://cran.r-project.org/web/packages/itertools/") | |
4617 | (synopsis "Iterator tools") | |
4618 | (description | |
4619 | "This package provides various tools for creating iterators, many | |
4620 | patterned after functions in the Python @code{itertools} module, and others | |
4621 | patterned after functions in the snow package.") | |
4622 | (license license:gpl2))) | |
4623 | ||
53718658 RW |
4624 | (define-public r-polynom |
4625 | (package | |
4626 | (name "r-polynom") | |
4627 | (version "1.3-9") | |
4628 | (source | |
4629 | (origin | |
4630 | (method url-fetch) | |
4631 | (uri (cran-uri "polynom" version)) | |
4632 | (sha256 | |
4633 | (base32 | |
4634 | "1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk")))) | |
4635 | (build-system r-build-system) | |
4636 | (home-page "https://cran.r-project.org/web/packages/polynom/") | |
4637 | (synopsis "Functions for univariate polynomial manipulations") | |
4638 | (description | |
4639 | "This package provides a collection of functions to implement a class for | |
4640 | univariate polynomial manipulations.") | |
4641 | (license license:gpl2))) | |
4642 | ||
dd954dd7 RW |
4643 | (define-public r-gbrd |
4644 | (package | |
4645 | (name "r-gbrd") | |
4646 | (version "0.4-11") | |
4647 | (source | |
4648 | (origin | |
4649 | (method url-fetch) | |
4650 | (uri (cran-uri "gbRd" version)) | |
4651 | (sha256 | |
4652 | (base32 | |
4653 | "06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82")))) | |
4654 | (properties `((upstream-name . "gbRd"))) | |
4655 | (build-system r-build-system) | |
4656 | (home-page "https://cran.r-project.org/web/packages/gbRd/") | |
4657 | (synopsis "Utilities for processing Rd objects and files") | |
4658 | (description | |
4659 | "This package provides utilities for processing Rd objects and files. | |
4660 | Extract argument descriptions and other parts of the help pages of | |
4661 | functions.") | |
4662 | (license license:gpl2+))) | |
4663 | ||
6a846975 RW |
4664 | (define-public r-rdpack |
4665 | (package | |
4666 | (name "r-rdpack") | |
4667 | (version "0.9-0") | |
4668 | (source | |
4669 | (origin | |
4670 | (method url-fetch) | |
4671 | (uri (cran-uri "Rdpack" version)) | |
4672 | (sha256 | |
4673 | (base32 | |
4674 | "067w0w6kza0hkzcnx58danl83yfvl9yjacr47mnid2bg856gdd1b")))) | |
4675 | (properties `((upstream-name . "Rdpack"))) | |
4676 | (build-system r-build-system) | |
4677 | (propagated-inputs | |
4678 | `(("r-bibtex" ,r-bibtex) | |
4679 | ("r-gbrd" ,r-gbrd))) | |
4680 | (home-page "https://github.com/GeoBosh/Rdpack") | |
4681 | (synopsis "Update and manipulate Rd documentation objects") | |
4682 | (description | |
4683 | "This package provides functions for manipulation of R documentation | |
4684 | objects, including functions @code{reprompt()} and @code{ereprompt()} for | |
4685 | updating Rd documentation for functions, methods and classes; it also includes | |
4686 | Rd macros for citations and import of references from bibtex files for use in | |
4687 | Rd files and roxygen2 comments, as well as many functions for manipulation of | |
4688 | references and Rd files.") | |
4689 | (license license:gpl2+))) | |
4690 | ||
c183fa26 RW |
4691 | (define-public r-officer |
4692 | (package | |
4693 | (name "r-officer") | |
4694 | (version "0.3.2") | |
4695 | (source | |
4696 | (origin | |
4697 | (method url-fetch) | |
4698 | (uri (cran-uri "officer" version)) | |
4699 | (sha256 | |
4700 | (base32 | |
4701 | "14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i")))) | |
4702 | (build-system r-build-system) | |
4703 | (propagated-inputs | |
4704 | `(("r-base64enc" ,r-base64enc) | |
4705 | ("r-digest" ,r-digest) | |
4706 | ("r-htmltools" ,r-htmltools) | |
4707 | ("r-magrittr" ,r-magrittr) | |
4708 | ("r-r6" ,r-r6) | |
4709 | ("r-rcpp" ,r-rcpp) | |
4710 | ("r-uuid" ,r-uuid) | |
4711 | ("r-xml2" ,r-xml2) | |
4712 | ("r-zip" ,r-zip))) | |
4713 | (home-page "https://davidgohel.github.io/officer") | |
4714 | (synopsis "Manipulation of Word and PowerPoint documents") | |
4715 | (description | |
4716 | "This package provides tools to access and manipulate Word and PowerPoint | |
4717 | documents from R. The package focuses on tabular and graphical reporting from | |
4718 | R; it also provides two functions that let users get document content into | |
4719 | data objects. A set of functions lets add and remove images, tables and | |
4720 | paragraphs of text in new or existing documents. When working with PowerPoint | |
4721 | presentations, slides can be added or removed; shapes inside slides can also | |
4722 | be added or removed. When working with Word documents, a cursor can be used | |
4723 | to help insert or delete content at a specific location in the document.") | |
4724 | (license license:gpl3))) | |
4725 | ||
bfee9ce8 RW |
4726 | (define-public r-snakecase |
4727 | (package | |
4728 | (name "r-snakecase") | |
4729 | (version "0.9.2") | |
4730 | (source | |
4731 | (origin | |
4732 | (method url-fetch) | |
4733 | (uri (cran-uri "snakecase" version)) | |
4734 | (sha256 | |
4735 | (base32 | |
4736 | "1g6xai53dl24ws0mwhqrkcv583ziaq505cv3z8v5dhjgy98kilyj")))) | |
4737 | (build-system r-build-system) | |
4738 | (propagated-inputs | |
4739 | `(("r-stringi" ,r-stringi) | |
4740 | ("r-stringr" ,r-stringr))) | |
4741 | (home-page "https://github.com/Tazinho/snakecase") | |
4742 | (synopsis "Convert strings into any case") | |
4743 | (description | |
4744 | "This package provides a consistent, flexible and easy to use tool to | |
4745 | parse and convert strings into cases like snake or camel among others.") | |
4746 | (license license:gpl3))) | |
4747 | ||
de059e4b RW |
4748 | (define-public r-prediction |
4749 | (package | |
4750 | (name "r-prediction") | |
4751 | (version "0.3.6") | |
4752 | (source | |
4753 | (origin | |
4754 | (method url-fetch) | |
4755 | (uri (cran-uri "prediction" version)) | |
4756 | (sha256 | |
4757 | (base32 | |
4758 | "19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1")))) | |
4759 | (build-system r-build-system) | |
4760 | (propagated-inputs | |
4761 | `(("r-data-table" ,r-data-table))) | |
4762 | (home-page "https://github.com/leeper/prediction") | |
4763 | (synopsis "Tidy, type-safe prediction methods") | |
4764 | (description | |
4765 | "This package provides the @code{prediction()} function, a type-safe | |
4766 | alternative to @code{predict()} that always returns a data frame. The package | |
4767 | currently supports common model types (e.g., @code{\"lm\"}, @code{\"glm\"}) | |
4768 | from the @code{stats} package, as well as numerous other model classes from | |
4769 | other add-on packages.") | |
4770 | (license license:expat))) | |
4771 | ||
cfc06314 RW |
4772 | (define-public r-sjlabelled |
4773 | (package | |
4774 | (name "r-sjlabelled") | |
4775 | (version "1.0.13") | |
4776 | (source | |
4777 | (origin | |
4778 | (method url-fetch) | |
4779 | (uri (cran-uri "sjlabelled" version)) | |
4780 | (sha256 | |
4781 | (base32 | |
4782 | "0xizj7mrhnbn8kwjgm076si9w68a7lgrx4vj1sbqmv9jx055h8wv")))) | |
4783 | (build-system r-build-system) | |
4784 | (propagated-inputs | |
4785 | `(("r-broom" ,r-broom) | |
4786 | ("r-dplyr" ,r-dplyr) | |
4787 | ("r-haven" ,r-haven) | |
4788 | ("r-magrittr" ,r-magrittr) | |
4789 | ("r-prediction" ,r-prediction) | |
4790 | ("r-purrr" ,r-purrr) | |
4791 | ("r-rlang" ,r-rlang) | |
4792 | ("r-snakecase" ,r-snakecase) | |
4793 | ("r-tibble" ,r-tibble) | |
4794 | ("r-tidyselect" ,r-tidyselect))) | |
4795 | (home-page "https://github.com/strengejacke/sjlabelled") | |
4796 | (synopsis "Labelled data utility functions") | |
4797 | (description | |
4798 | "This package provides a collection of functions dealing with labelled | |
4799 | data, like reading and writing data between R and other statistical software | |
4800 | packages. This includes easy ways to get, set or change value and variable | |
4801 | label attributes, to convert labelled vectors into factors or numeric (and | |
4802 | vice versa), or to deal with multiple declared missing values.") | |
4803 | (license license:gpl3))) | |
4804 | ||
1f560b9c RW |
4805 | (define-public r-sjmisc |
4806 | (package | |
4807 | (name "r-sjmisc") | |
4808 | (version "2.7.4") | |
4809 | (source | |
4810 | (origin | |
4811 | (method url-fetch) | |
4812 | (uri (cran-uri "sjmisc" version)) | |
4813 | (sha256 | |
4814 | (base32 | |
4815 | "11cy09k1d2y5wwqvafqxr01hzk4x68ji2pqlwj7fnpw27i3ap4q4")))) | |
4816 | (build-system r-build-system) | |
4817 | (propagated-inputs | |
4818 | `(("r-broom" ,r-broom) | |
4819 | ("r-crayon" ,r-crayon) | |
4820 | ("r-dplyr" ,r-dplyr) | |
4821 | ("r-haven" ,r-haven) | |
4822 | ("r-magrittr" ,r-magrittr) | |
4823 | ("r-pillar" ,r-pillar) | |
4824 | ("r-purrr" ,r-purrr) | |
4825 | ("r-rlang" ,r-rlang) | |
4826 | ("r-sjlabelled" ,r-sjlabelled) | |
4827 | ("r-stringdist" ,r-stringdist) | |
4828 | ("r-stringr" ,r-stringr) | |
4829 | ("r-tibble" ,r-tibble) | |
4830 | ("r-tidyr" ,r-tidyr) | |
4831 | ("r-tidyselect" ,r-tidyselect))) | |
4832 | (home-page "https://github.com/strengejacke/sjmisc") | |
4833 | (synopsis "Data and variable transformation functions") | |
4834 | (description | |
4835 | "This package is a collection of miscellaneous utility functions, | |
4836 | supporting data transformation tasks like recoding, dichotomizing or grouping | |
4837 | variables, setting and replacing missing values. The data transformation | |
4838 | functions also support labelled data, and all integrate seamlessly into a | |
4839 | tidyverse workflow.") | |
4840 | (license license:gpl3))) | |
4841 | ||
aaed237d RW |
4842 | (define-public r-nortest |
4843 | (package | |
4844 | (name "r-nortest") | |
4845 | (version "1.0-4") | |
4846 | (source | |
4847 | (origin | |
4848 | (method url-fetch) | |
4849 | (uri (cran-uri "nortest" version)) | |
4850 | (sha256 | |
4851 | (base32 | |
4852 | "17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3")))) | |
4853 | (build-system r-build-system) | |
4854 | (home-page "https://cran.r-project.org/web/packages/nortest/") | |
4855 | (synopsis "Tests for normality") | |
4856 | (description | |
4857 | "This package provides five omnibus tests for testing the composite | |
4858 | hypothesis of normality.") | |
4859 | (license license:gpl2+))) | |
4860 | ||
0fd7d59d RW |
4861 | (define-public r-moonbook |
4862 | (package | |
4863 | (name "r-moonbook") | |
4864 | (version "0.2.3") | |
4865 | (source | |
4866 | (origin | |
4867 | (method url-fetch) | |
4868 | (uri (cran-uri "moonBook" version)) | |
4869 | (sha256 | |
4870 | (base32 | |
4871 | "0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6")))) | |
4872 | (properties `((upstream-name . "moonBook"))) | |
4873 | (build-system r-build-system) | |
4874 | (propagated-inputs | |
4875 | `(("r-magrittr" ,r-magrittr) | |
4876 | ("r-nortest" ,r-nortest) | |
4877 | ("r-purrr" ,r-purrr) | |
4878 | ("r-sjmisc" ,r-sjmisc) | |
4879 | ("r-stringr" ,r-stringr) | |
4880 | ("r-survival" ,r-survival))) | |
4881 | (home-page "https://github.com/cardiomoon/moonBook") | |
4882 | (synopsis "Functions and datasets for the book by Keon-Woong Moon") | |
4883 | (description | |
4884 | "This package provides several analysis-related functions for the book | |
4885 | entitled \"R statistics and graph for medical articles\" (written in Korean), | |
4886 | version 1, by Keon-Woong Moon with Korean demographic data with several plot | |
4887 | functions.") | |
4888 | (license license:gpl2))) | |
4889 | ||
589bd1c4 RW |
4890 | (define-public r-flextable |
4891 | (package | |
4892 | (name "r-flextable") | |
4893 | (version "0.4.5") | |
4894 | (source | |
4895 | (origin | |
4896 | (method url-fetch) | |
4897 | (uri (cran-uri "flextable" version)) | |
4898 | (sha256 | |
4899 | (base32 | |
4900 | "09j2y0z7rkc0w1cl9pp1cpk6fnzzfr6245mxa3ca42z9k2cy2jfl")))) | |
4901 | (build-system r-build-system) | |
4902 | (propagated-inputs | |
4903 | `(("r-gdtools" ,r-gdtools) | |
4904 | ("r-htmltools" ,r-htmltools) | |
4905 | ("r-knitr" ,r-knitr) | |
4906 | ("r-officer" ,r-officer) | |
4907 | ("r-r6" ,r-r6) | |
4908 | ("r-rmarkdown" ,r-rmarkdown) | |
4909 | ("r-stringr" ,r-stringr) | |
4910 | ("r-xml2" ,r-xml2))) | |
4911 | (home-page "https://davidgohel.github.io/flextable") | |
4912 | (synopsis "Functions for tabular reporting") | |
4913 | (description | |
4914 | "This package provides tools to create pretty tables for HTML documents | |
4915 | and other formats. Functions are provided to let users create tables, modify | |
4916 | and format their content. It extends the @code{officer} package and can be | |
4917 | used within R markdown documents when rendering to HTML and to Word | |
4918 | documents.") | |
4919 | (license license:gpl3))) | |
4920 | ||
846325a8 RW |
4921 | (define-public r-writexl |
4922 | (package | |
4923 | (name "r-writexl") | |
4924 | (version "1.0") | |
4925 | (source | |
4926 | (origin | |
4927 | (method url-fetch) | |
4928 | (uri (cran-uri "writexl" version)) | |
4929 | (sha256 | |
4930 | (base32 | |
4931 | "0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf")))) | |
4932 | (build-system r-build-system) | |
4933 | (inputs `(("zlib" ,zlib))) | |
4934 | (home-page "https://github.com/ropensci/writexl") | |
4935 | (synopsis "Export data frames to xlsx format") | |
4936 | (description | |
4937 | "This package provides a data frame to xlsx exporter based on | |
4938 | libxlsxwriter.") | |
4939 | (license license:bsd-2))) | |
64abd245 RW |
4940 | |
4941 | (define-public r-biasedurn | |
4942 | (package | |
4943 | (name "r-biasedurn") | |
4944 | (version "1.07") | |
4945 | (source | |
4946 | (origin | |
4947 | (method url-fetch) | |
4948 | (uri (cran-uri "BiasedUrn" version)) | |
4949 | (sha256 | |
4950 | (base32 | |
4951 | "13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3")))) | |
4952 | (properties `((upstream-name . "BiasedUrn"))) | |
4953 | (build-system r-build-system) | |
4954 | (home-page "https://cran.r-project.org/web/packages/BiasedUrn/") | |
4955 | (synopsis "Biased Urn model distributions") | |
4956 | (description | |
4957 | "This package provides statistical models of biased sampling in the form | |
4958 | of univariate and multivariate noncentral hypergeometric distributions, | |
4959 | including Wallenius' noncentral hypergeometric distribution and Fisher's | |
4960 | noncentral hypergeometric distribution (also called extended hypergeometric | |
4961 | distribution).") | |
4962 | (license license:gpl3))) | |
87ba9508 RW |
4963 | |
4964 | (define-public r-goplot | |
4965 | (package | |
4966 | (name "r-goplot") | |
4967 | (version "1.0.2") | |
4968 | (source | |
4969 | (origin | |
4970 | (method url-fetch) | |
4971 | (uri (cran-uri "GOplot" version)) | |
4972 | (sha256 | |
4973 | (base32 | |
4974 | "1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix")))) | |
4975 | (properties `((upstream-name . "GOplot"))) | |
4976 | (build-system r-build-system) | |
4977 | (propagated-inputs | |
4978 | `(("r-ggdendro" ,r-ggdendro) | |
4979 | ("r-ggplot2" ,r-ggplot2) | |
4980 | ("r-gridextra" ,r-gridextra) | |
4981 | ("r-rcolorbrewer" ,r-rcolorbrewer))) | |
4982 | (home-page "https://github.com/wencke/wencke.github.io") | |
4983 | (synopsis "Visualization of functional analysis data") | |
4984 | (description | |
4985 | "This package provides an implementation of multilayered visualizations | |
4986 | for enhanced graphical representation of functional analysis data. It | |
4987 | combines and integrates omics data derived from expression and functional | |
4988 | annotation enrichment analyses. Its plotting functions have been developed | |
4989 | with an hierarchical structure in mind: starting from a general overview to | |
4990 | identify the most enriched categories (modified bar plot, bubble plot) to a | |
4991 | more detailed one displaying different types of relevant information for the | |
4992 | molecules in a given set of categories (circle plot, chord plot, cluster plot, | |
4993 | Venn diagram, heatmap).") | |
4994 | (license license:gpl2))) | |
aec7d6be RW |
4995 | |
4996 | (define-public r-getopt | |
4997 | (package | |
4998 | (name "r-getopt") | |
4999 | (version "1.20.2") | |
5000 | (source | |
5001 | (origin | |
5002 | (method url-fetch) | |
5003 | (uri (cran-uri "getopt" version)) | |
5004 | (sha256 | |
5005 | (base32 | |
5006 | "13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x")))) | |
5007 | (build-system r-build-system) | |
5008 | (home-page "https://github.com/trevorld/getopt") | |
5009 | (synopsis "Command-line option processor for R") | |
5010 | (description | |
5011 | "This package is designed to be used with Rscript to write shebang | |
5012 | scripts that accept short and long options. Many users will prefer to | |
5013 | use the packages @code{optparse} or @code{argparse} which add extra | |
5014 | features like automatically generated help options and usage texts, | |
5015 | support for default values, positional argument support, etc.") | |
5016 | (license license:gpl2+))) | |
3629622b RW |
5017 | |
5018 | (define-public r-findpython | |
5019 | (package | |
5020 | (name "r-findpython") | |
5021 | (version "1.0.3") | |
5022 | (source | |
5023 | (origin | |
5024 | (method url-fetch) | |
5025 | (uri (cran-uri "findpython" version)) | |
5026 | (sha256 | |
5027 | (base32 | |
5028 | "1y08jk2ffmkf9zpwiz2xymjhfwqvls9vzsnq62v278ghw9d571jl")))) | |
5029 | (build-system r-build-system) | |
5030 | (home-page "https://github.com/trevorld/findpython") | |
5031 | (synopsis "Functions to find an acceptable Python binary") | |
5032 | (description | |
5033 | "This package was designed to find an acceptable Python binary that | |
5034 | matches version and feature constraints.") | |
5035 | (license license:expat))) | |
fa697599 RW |
5036 | |
5037 | ;; This in not the same as "r-argparser" | |
5038 | (define-public r-argparse | |
5039 | (package | |
5040 | (name "r-argparse") | |
5041 | (version "1.1.1") | |
5042 | (source | |
5043 | (origin | |
5044 | (method url-fetch) | |
5045 | (uri (cran-uri "argparse" version)) | |
5046 | (sha256 | |
5047 | (base32 | |
5048 | "0fzrbj87b274vf96azdnsjxk2nf45d5wy58vzmlah4b4h7q4j524")))) | |
5049 | (build-system r-build-system) | |
5050 | (inputs `(("python" ,python))) | |
5051 | (propagated-inputs | |
5052 | `(("r-findpython" ,r-findpython) | |
5053 | ("r-getopt" ,r-getopt) | |
5054 | ("r-jsonlite" ,r-jsonlite) | |
5055 | ("r-proto" ,r-proto))) | |
5056 | (home-page "https://github.com/trevorld/argparse") | |
5057 | (synopsis "Command line optional and positional argument parser") | |
5058 | (description | |
5059 | "This package provides a command line parser to be used with Rscript to | |
5060 | write shebang scripts that gracefully accept positional and optional arguments | |
5061 | and automatically generate usage notices.") | |
5062 | (license license:gpl2+))) | |
4646d18e RW |
5063 | |
5064 | (define-public r-hash | |
5065 | (package | |
5066 | (name "r-hash") | |
5067 | (version "2.2.6") | |
5068 | (source | |
5069 | (origin | |
5070 | (method url-fetch) | |
5071 | (uri (cran-uri "hash" version)) | |
5072 | (sha256 | |
5073 | (base32 | |
5074 | "0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz")))) | |
5075 | (build-system r-build-system) | |
5076 | (home-page "https://cran.r-project.org/web/packages/hash/") | |
5077 | (synopsis "Implementation of hash/associated arrays/dictionaries") | |
5078 | (description | |
5079 | "This package implements a data structure similar to hashes in Perl and | |
5080 | dictionaries in Python but with a purposefully R flavor. For objects of | |
5081 | appreciable size, access using hashes outperforms native named lists and | |
5082 | vectors.") | |
5083 | (license license:gpl2+))) | |
06a45ad6 RW |
5084 | |
5085 | (define-public r-orddom | |
5086 | (package | |
5087 | (name "r-orddom") | |
5088 | (version "3.1") | |
5089 | (source | |
5090 | (origin | |
5091 | (method url-fetch) | |
5092 | (uri (cran-uri "orddom" version)) | |
5093 | (sha256 | |
5094 | (base32 | |
5095 | "165axs15fvwhrp89xd87l81q3h2qjll1vrwcsap645cwvb85nwsh")))) | |
5096 | (build-system r-build-system) | |
5097 | (propagated-inputs `(("r-psych" ,r-psych))) | |
5098 | (home-page "https://cran.r-project.org/web/packages/orddom/") | |
5099 | (synopsis "Ordinal dominance statistics") | |
5100 | (description | |
5101 | "This package provides tools to compute ordinal, statistics and effect | |
5102 | sizes as an alternative to mean comparison: Cliff's delta or success rate | |
5103 | difference (SRD), Vargha and Delaney's A or the Area Under a Receiver | |
5104 | Operating Characteristic Curve (AUC), the discrete type of McGraw & Wong's | |
5105 | Common Language Effect Size (CLES) or Grissom & Kim's Probability of | |
5106 | Superiority (PS), and the Number needed to treat (NNT) effect size. Moreover, | |
5107 | comparisons to Cohen's d are offered based on Huberty & Lowman's Percentage of | |
5108 | Group (Non-)Overlap considerations.") | |
5109 | (license license:gpl2))) | |
0fccd15f RW |
5110 | |
5111 | (define-public r-doby | |
5112 | (package | |
5113 | (name "r-doby") | |
cb96d81b | 5114 | (version "4.6-2") |
0fccd15f RW |
5115 | (source |
5116 | (origin | |
5117 | (method url-fetch) | |
5118 | (uri (cran-uri "doBy" version)) | |
5119 | (sha256 | |
5120 | (base32 | |
cb96d81b | 5121 | "02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb")))) |
0fccd15f RW |
5122 | (properties `((upstream-name . "doBy"))) |
5123 | (build-system r-build-system) | |
5124 | (propagated-inputs | |
5125 | `(("r-dplyr" ,r-dplyr) | |
5126 | ("r-magrittr" ,r-magrittr) | |
5127 | ("r-mass" ,r-mass) | |
5128 | ("r-matrix" ,r-matrix) | |
5129 | ("r-plyr" ,r-plyr))) | |
5130 | (home-page "http://people.math.aau.dk/~sorenh/software/doBy/") | |
5131 | (synopsis "Groupwise statistics, LSmeans, linear contrasts, and utilities") | |
5132 | (description | |
5133 | "This package contains: | |
5134 | ||
5135 | @itemize | |
5136 | @item facilities for working with grouped data: @code{do} | |
5137 | something to data stratified @code{by} some variables. | |
5138 | @item implementations of least-squares means, general linear contrasts, and | |
5139 | @item miscellaneous other utilities. | |
5140 | @end itemize\n") | |
5141 | (license license:gpl2+))) | |
5850c5b3 RW |
5142 | |
5143 | (define-public r-refgenome | |
5144 | (package | |
5145 | (name "r-refgenome") | |
5146 | (version "1.7.3") | |
5147 | (source | |
5148 | (origin | |
5149 | (method url-fetch) | |
5150 | (uri (cran-uri "refGenome" version)) | |
5151 | (sha256 | |
5152 | (base32 | |
5153 | "15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn")))) | |
5154 | (properties `((upstream-name . "refGenome"))) | |
5155 | (build-system r-build-system) | |
5156 | (propagated-inputs | |
5157 | `(("r-dbi" ,r-dbi) | |
5158 | ("r-doby" ,r-doby) | |
5159 | ("r-rsqlite" ,r-rsqlite))) | |
5160 | (home-page "https://cran.r-project.org/web/packages/refGenome/") | |
5161 | (synopsis | |
5162 | "Gene and splice site annotation using annotation data from Ensembl and UCSC") | |
5163 | (description | |
5164 | "This package contains functionality for importing and managing of | |
5165 | downloaded genome annotation data from the Ensembl genome browser (European | |
5166 | Bioinformatics Institute) and from the UCSC genome browser (University of | |
5167 | California, Santa Cruz) and annotation routines for genomic positions and | |
5168 | splice site positions.") | |
5169 | (license license:gpl2))) | |
ff7d53a7 RW |
5170 | |
5171 | (define-public r-basix | |
5172 | (package | |
5173 | (name "r-basix") | |
5174 | (version "1.1") | |
5175 | (source | |
5176 | (origin | |
5177 | (method url-fetch) | |
5178 | (uri (cran-uri "BASIX" version)) | |
5179 | (sha256 | |
5180 | (base32 | |
5181 | "18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id")))) | |
5182 | (properties `((upstream-name . "BASIX"))) | |
5183 | (build-system r-build-system) | |
5184 | (home-page "https://cran.r-project.org/web/packages/BASIX/") | |
5185 | (synopsis "Efficient C/C++ toolset for R") | |
5186 | (description | |
5187 | "BASIX provides some efficient C/C++ implementations of native R | |
5188 | procedures to speed up calculations in R.") | |
5189 | (license license:gpl2))) | |
65e74814 RW |
5190 | |
5191 | (define-public r-blockfest | |
5192 | (package | |
5193 | (name "r-blockfest") | |
5194 | (version "1.6") | |
5195 | (source | |
5196 | (origin | |
5197 | (method url-fetch) | |
5198 | (uri (cran-uri "BlockFeST" version)) | |
5199 | (sha256 | |
5200 | (base32 | |
5201 | "0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5")))) | |
5202 | (properties `((upstream-name . "BlockFeST"))) | |
5203 | (build-system r-build-system) | |
5204 | (propagated-inputs `(("r-basix" ,r-basix))) | |
5205 | (home-page "https://cran.r-project.org/web/packages/BlockFeST/") | |
5206 | (synopsis "Bayesian calculation of region-specific fixation index") | |
5207 | (description | |
5208 | "This package provides an R implementation of an extension of the | |
5209 | BayeScan software for codominant markers, adding the option to group | |
5210 | individual SNPs into pre-defined blocks. A typical application of this new | |
5211 | approach is the identification of genomic regions, genes, or gene sets | |
5212 | containing one or more SNPs that evolved under directional selection.") | |
5213 | (license license:gpl2))) | |
b9ff2599 | 5214 | |
fbdf05b1 RW |
5215 | (define-public r-proc |
5216 | (package | |
5217 | (name "r-proc") | |
5218 | (version "1.12.1") | |
5219 | (source | |
5220 | (origin | |
5221 | (method url-fetch) | |
5222 | (uri (cran-uri "pROC" version)) | |
5223 | (sha256 | |
5224 | (base32 | |
5225 | "05ad69a6fxy9k903cw3h4q59ch2jv6qfg9yjdbw3cgiiazcafrlj")))) | |
5226 | (properties `((upstream-name . "pROC"))) | |
5227 | (build-system r-build-system) | |
5228 | (propagated-inputs | |
5229 | `(("r-ggplot2" ,r-ggplot2) | |
5230 | ("r-plyr" ,r-plyr) | |
5231 | ("r-rcpp" ,r-rcpp))) | |
5232 | (home-page "http://expasy.org/tools/pROC/") | |
5233 | (synopsis "Display and analyze ROC curves") | |
5234 | (description | |
5235 | "This package provides tools for visualizing, smoothing and comparing | |
5236 | receiver operating characteristic (ROC curves). The area under the | |
5237 | curve (AUC) can be compared with statistical tests based on U-statistics or | |
5238 | bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.") | |
5239 | (license license:gpl3+))) | |
cea4d360 RW |
5240 | |
5241 | (define-public r-rootsolve | |
5242 | (package | |
5243 | (name "r-rootsolve") | |
5244 | (version "1.7") | |
5245 | (source | |
5246 | (origin | |
5247 | (method url-fetch) | |
5248 | (uri (cran-uri "rootSolve" version)) | |
5249 | (sha256 | |
5250 | (base32 | |
5251 | "08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8")))) | |
5252 | (properties `((upstream-name . "rootSolve"))) | |
5253 | (build-system r-build-system) | |
5254 | (native-inputs `(("gfortran" ,gfortran))) | |
5255 | (home-page "https://cran.r-project.org/web/packages/rootSolve/") | |
5256 | (synopsis "Tools for the analysis of ordinary differential equations") | |
5257 | (description | |
5258 | "This package provides routines to find the root of nonlinear functions, | |
5259 | and to perform steady-state and equilibrium analysis of @dfn{ordinary | |
5260 | differential equations} (ODE). It includes routines that: | |
5261 | ||
5262 | @enumerate | |
5263 | @item generate gradient and jacobian matrices (full and banded), | |
5264 | @item find roots of non-linear equations by the Newton-Raphson method, | |
5265 | @item estimate steady-state conditions of a system of (differential) equations | |
5266 | in full, banded or sparse form, using the Newton-Raphson method, or by | |
5267 | dynamically running, | |
5268 | @item solve the steady-state conditions for uni- and multicomponent 1-D, 2-D, | |
5269 | and 3-D partial differential equations, that have been converted to ordinary | |
5270 | differential equations by numerical differencing (using the method-of-lines | |
5271 | approach). | |
5272 | @end enumerate\n") | |
5273 | (license license:gpl2+))) | |
c994418b | 5274 | |
5275 | (define-public r-abcanalysis | |
5276 | (package | |
5277 | (name "r-abcanalysis") | |
5278 | (version "1.2.1") | |
5279 | (source | |
5280 | (origin | |
5281 | (method url-fetch) | |
5282 | (uri (cran-uri "ABCanalysis" version)) | |
5283 | (sha256 | |
5284 | (base32 "0wac1ksmnxa36v99ca4hv8k0rsh3igwpcllmlv9wf7i9kgqviqwi")))) | |
5285 | (properties `((upstream-name . "ABCanalysis"))) | |
5286 | (build-system r-build-system) | |
5287 | (propagated-inputs `(("r-plotrix" ,r-plotrix))) | |
5288 | (home-page "https://www.uni-marburg.de/fb12/arbeitsgruppen/datenbionik/software-en/") | |
5289 | (synopsis "Computed ABC Analysis") | |
5290 | (description | |
5291 | "Multivariate data sets often differ in several factors or derived statistical | |
5292 | parameters, which have to be selected for a valid interpretation. Basing this | |
5293 | selection on traditional statistical limits leads occasionally to the perception | |
5294 | of losing information from a data set. This package provides tools to calculate | |
5295 | these limits on the basis of the mathematical properties of the distribution of | |
5296 | the analyzed items.") | |
5297 | (license license:gpl3))) | |
87b576aa | 5298 | |
5299 | (define-public r-slam | |
5300 | (package | |
5301 | (name "r-slam") | |
5302 | (version "0.1-43") | |
5303 | (source | |
5304 | (origin | |
5305 | (method url-fetch) | |
5306 | (uri (cran-uri "slam" version)) | |
5307 | (sha256 | |
5308 | (base32 "0hy4qzngcgafxxr6ld7n9a9wy979ji998gpcc32vidwyab66dj5h")))) | |
5309 | (build-system r-build-system) | |
5310 | (home-page "https://cran.r-project.org/web/packages/slam/") | |
5311 | (synopsis "Sparse lightweight arrays and matrices") | |
5312 | (description | |
5313 | "This package contains data structures and algorithms for sparse arrays and matrices, | |
5314 | based on index arrays and simple triplet representations, respectively.") | |
5315 | (license license:gpl2))) | |
881cc61c | 5316 | |
5317 | (define-public r-manipulatewidget | |
5318 | (package | |
5319 | (name "r-manipulatewidget") | |
5320 | (version "0.10.0") | |
5321 | (source | |
5322 | (origin | |
5323 | (method url-fetch) | |
5324 | (uri (cran-uri "manipulateWidget" version)) | |
5325 | (sha256 | |
5326 | (base32 "1zagrbwkn2d50zzw8i2vyb1hsq4cydmfsqiy1a2qlp6zrv8a6q9x")))) | |
5327 | (properties | |
5328 | `((upstream-name . "manipulateWidget"))) | |
5329 | (build-system r-build-system) | |
5330 | (propagated-inputs | |
5331 | `(("r-base64enc" ,r-base64enc) | |
5332 | ("r-codetools" ,r-codetools) | |
5333 | ("r-htmltools" ,r-htmltools) | |
5334 | ("r-htmlwidgets" ,r-htmlwidgets) | |
5335 | ("r-knitr" ,r-knitr) | |
5336 | ("r-miniui" ,r-miniui) | |
5337 | ("r-shiny" ,r-shiny) | |
5338 | ("r-webshot" ,r-webshot))) | |
5339 | (home-page "https://github.com/rte-antares-rpackage/manipulateWidget/") | |
5340 | (synopsis "Add even more interactivity to interactive charts") | |
5341 | (description | |
5342 | "This package lets you create in just a few lines of R code a nice user interface to | |
5343 | modify the data or the graphical parameters of one or multiple interactive | |
5344 | charts. It is useful to quickly explore visually some data or for package | |
5345 | developers to generate user interfaces easy to maintain.") | |
5346 | (license license:gpl2+))) | |
16b0e8da | 5347 | |
5348 | (define-public r-a3 | |
5349 | (package | |
5350 | (name "r-a3") | |
5351 | (version "1.0.0") | |
5352 | (source | |
5353 | (origin | |
5354 | (method url-fetch) | |
5355 | (uri (cran-uri "A3" version)) | |
5356 | (sha256 | |
5357 | (base32 "017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw")))) | |
5358 | (properties `((upstream-name . "A3"))) | |
5359 | (build-system r-build-system) | |
5360 | (propagated-inputs | |
5361 | `(("r-pbapply" ,r-pbapply) | |
5362 | ("r-xtable" ,r-xtable))) | |
5363 | (home-page "https://cran.r-project.org/web/packages/A3/") | |
5364 | (synopsis "Error metrics for predictive models") | |
5365 | (description | |
5366 | "This package supplies tools for tabulating and analyzing the results of predictive | |
5367 | models. The methods employed are applicable to virtually any predictive model | |
5368 | and make comparisons between different methodologies straightforward.") | |
5369 | (license license:gpl2+))) | |
59b55def RW |
5370 | |
5371 | (define-public r-infotheo | |
5372 | (package | |
5373 | (name "r-infotheo") | |
5374 | (version "1.2.0") | |
5375 | (source | |
5376 | (origin | |
5377 | (method url-fetch) | |
5378 | (uri (cran-uri "infotheo" version)) | |
5379 | (sha256 | |
5380 | (base32 | |
5381 | "18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv")))) | |
5382 | (build-system r-build-system) | |
5383 | (home-page "http://homepage.meyerp.com/software") | |
5384 | (synopsis "Information-theoretic measures") | |
5385 | (description | |
5386 | "This package implements various measures of information theory based on | |
5387 | several entropy estimators.") | |
5388 | (license license:gpl3+))) | |
9e21f217 | 5389 | |
5390 | (define-public r-abcoptim | |
5391 | (package | |
5392 | (name "r-abcoptim") | |
5393 | (version "0.15.0") | |
5394 | (source | |
5395 | (origin | |
5396 | (method url-fetch) | |
5397 | (uri (cran-uri "ABCoptim" version)) | |
5398 | (sha256 | |
5399 | (base32 "1ih0xk88qhsmpvnxf56041wx5sk8as2f4f2gdnpnwdym9mbr9n4b")))) | |
5400 | (properties `((upstream-name . "ABCoptim"))) | |
5401 | (build-system r-build-system) | |
5402 | (propagated-inputs `(("r-rcpp" ,r-rcpp))) | |
5403 | (home-page "https://github.com/gvegayon/ABCoptim/") | |
5404 | (synopsis "Optimization of Artificial Bee Colony algorithm") | |
5405 | (description | |
5406 | "Artificial Bee Colony (ABC) is one of the most recently defined algorithms by Dervis | |
5407 | Karaboga in 2005, motivated by the intelligent behavior of honey bees. It is as | |
5408 | simple as Particle Swarm Optimization (PSO) and Differential Evolution (DE) | |
5409 | algorithms, and uses only common control parameters such as colony size and | |
5410 | maximum cycle number. The @code{r-abcoptim} implements the Artificial bee | |
5411 | colony optimization algorithm @url{http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pdf}. | |
5412 | This version is a work-in-progress and is written in R code.") | |
5413 | (license license:expat))) | |
40c10917 | 5414 | |
5415 | (define-public r-abcp2 | |
5416 | (package | |
5417 | (name "r-abcp2") | |
5418 | (version "1.2") | |
5419 | (source | |
5420 | (origin | |
5421 | (method url-fetch) | |
5422 | (uri (cran-uri "ABCp2" version)) | |
5423 | (sha256 | |
5424 | (base32 "1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx")))) | |
5425 | (properties `((upstream-name . "ABCp2"))) | |
5426 | (build-system r-build-system) | |
5427 | (propagated-inputs `(("r-mass" ,r-mass))) | |
5428 | (home-page "https://cran.r-project.org/web/packages/ABCp2/") | |
5429 | (synopsis "Approximate Bayesian Computational Model for Estimating P2") | |
5430 | (description | |
5431 | "This package tests the goodness of fit of a distribution of offspring to the Normal, | |
5432 | Poisson, and Gamma distribution and estimates the proportional paternity of the | |
5433 | second male (P2) based on the best fit distribution.") | |
5434 | (license license:gpl2))) | |
cadc10a5 | 5435 | |
5436 | (define-public r-abcrf | |
5437 | (package | |
5438 | (name "r-abcrf") | |
5439 | (version "1.7.1") | |
5440 | (source | |
5441 | (origin | |
5442 | (method url-fetch) | |
5443 | (uri (cran-uri "abcrf" version)) | |
5444 | (sha256 | |
5445 | (base32 "06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441")))) | |
5446 | (build-system r-build-system) | |
5447 | (propagated-inputs | |
5448 | `(("r-mass" ,r-mass) | |
5449 | ("r-matrixstats" ,r-matrixstats) | |
5450 | ("r-ranger" ,r-ranger) | |
5451 | ("r-rcpp" ,r-rcpp) | |
5452 | ("r-rcpparmadillo" ,r-rcpparmadillo) | |
5453 | ("r-readr" ,r-readr) | |
5454 | ("r-stringr" ,r-stringr))) | |
5455 | (home-page "https://cran.r-project.org/web/packages/abcrf/") | |
5456 | (synopsis "Approximate bayesian computation via random forests") | |
5457 | (description | |
5458 | "This package performs approximate bayesian computation (ABC) model choice and | |
5459 | parameter inference via random forests. This machine learning tool named random | |
5460 | forests (RF) can conduct selection among the highly complex models covered by | |
5461 | ABC algorithms.") | |
5462 | (license license:gpl2+))) | |
12da2a5e | 5463 | |
5464 | (define-public r-abctools | |
5465 | (package | |
5466 | (name "r-abctools") | |
5467 | (version "1.1.3") | |
5468 | (source | |
5469 | (origin | |
5470 | (method url-fetch) | |
5471 | (uri (cran-uri "abctools" version)) | |
5472 | (sha256 | |
5473 | (base32 "07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97")))) | |
5474 | (build-system r-build-system) | |
5475 | (propagated-inputs | |
5476 | `(("r-abc" ,r-abc) | |
5477 | ("r-abind" ,r-abind) | |
5478 | ("r-hmisc" ,r-hmisc) | |
5479 | ("r-plyr" ,r-plyr))) | |
5480 | (home-page "https://github.com/dennisprangle/abctools/") | |
5481 | (synopsis "Tools for ABC analyses") | |
5482 | (description | |
5483 | "This @code{r-abctools} package provides tools for approximate Bayesian computation | |
5484 | including summary statistic selection and assessing coverage. This includes | |
5485 | recent dimension reduction algorithms to tune the choice of summary statistics, | |
5486 | and coverage methods to tune the choice of threshold.") | |
5487 | (license license:gpl2+))) |