gnu: gpsbabel: Make some inputs native.

* gnu/packages/gps.scm (gpsbabel)[inputs]: Move qttools from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: alsa-modular-synth: Make some inputs native.

* gnu/packages/audio.scm (alsa-modular-synth)[inputs]: Move qttools from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: liblinphone: Add features.

* gnu/packages/linphone.scm (liblinphone)[arguments]<#:configure-flags>: Add features.
<#:phases>[patch]: New phase.
[inputs]: Add glib, gtk2, notify.
[propagated-inputs]: Add murrine.

gnu: Add liblinphone.

* gnu/packages/linphone.scm (liblinphone): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: Add mediastreamer2.

* gnu/packages/linphone.scm (mediastreamer2): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: Add belle-sip.

* gnu/packages/linphone.scm (belle-sip): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: mm-common: Make coreutils and sed native-inputs.

* gnu/packages/gnome.scm (mm-common)[inputs]: Remove coreutils, sed.
[native-inputs]: Add coreutils, sed.

gnu: Add mm-common.

* gnu/packages/gnome.scm (mm-common): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: python-intervaltree: Update to 3.0.2.

* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.0.2.
[arguments]: Don't skip the tests, work around the problematic
sanity-check instead.

gnu: linux-libre: Remove 5.6.

The corresponding kernel config files are not yet updated, so remove
linux-libre-5.6 until they can be reviewed. See bug #40190.

* gnu/packages/linux (linux-libre-5.6): Delete variable.

gnu: gsm: Update to 1.0.19.

* gnu/packages/audio.scm (gsm): Update to 1.0.19.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>

gnu: gsm: Fix installation directory.

This is a follow-up commit to 74c7f367daa, which broke the installation of the
bin, lib and share artifacts.

* gnu/packages/audio.scm (gsm)[make-flags]: Programmatically build the
INSTALL_ROOT make flag so that the %output variable gets properly expanded.
Instead of repeating the default CCFLAGS values as a make flag...
[phases]: ...add "-fPIC" using substitutes* in a new add-fpic-ccflag phase.

gnu: Add mtpaint.

* gnu/packages/image.scm (mtpaint): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: xfce4-places-plugin: Make some inputs native.

* gnu/packages/xfce.scm (xfce4-places-plugin)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: spacefm: Make some inputs native.

* gnu/packages/lxde.scm (spacefm)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: ristretto: Make some inputs native.

* gnu/packages/xfce.scm (ristretto)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: pcb: Make some inputs native.

* gnu/packages/engineering.scm (pcb)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: mate: Make some inputs native.

* gnu/packages/mate.scm (mate)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to this new field.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: lepton-eda: Make some inputs native.

* gnu/packages/engineering.scm (lepton-eda)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: gerbv: Make some inputs native.

* gnu/packages/engineering.scm (gerbv)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: geda-gaf: Make some inputs native.

* gnu/packages/engineering.scm (geda-gaf)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: aegisub: Make some inputs native.

* gnu/packages/video.scm (aegisub)[inputs]: Move desktop-files-utils from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: astronomy: Sort list of imported package modules.

* gnu/packages/astronomy.scm (astronomy): Sort list of imported packages.

gnu: Add gpredict.

* gnu/packages/astronomy.scm (gpredict): New variable.

gnu: Add goocanvas.

* gnu/packages/gtk.scm (goocanvas): New variable.

gnu: gnome-weather: Work around desktop application startup failure.

* gnu/packages/gnome.scm (gnome-weather)[arguments]: Replace Exec= line with
  gnome-weather.

gnu: Add kernel-module-loader-service.

* doc/guix.texi (Linux Services): Add a new subsection and document the
new service and its configuration.
* gnu/services/linux.scm (kernel-module-loader-service-type): New type.
(kernel-module-loader-shepherd-service): New procedure.
* gnu/tests/linux-modules.scm (module-loader-program): Procedure
removed.
(modules-loaded?-program): New procedure.
(run-loadable-kernel-modules-test): 'module-loader-program' procedure
replaced by the new one.
[os]: Use 'kernel-module-loader-service'.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

services: Allow modprobe to use "/etc/modprobe.d".

* gnu/services.scm (%modprobe-wrapper): Set 'MODPROBE_OPTIONS'
environment variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: geonkick: Update to 1.10.0.

* gnu/packages/music.scm (geonkick): Update to 1.10.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>

gnu: redkite: Update to 0.8.0.

* gnu/packages/audio.scm (redkite): Update to 0.8.0.

gnu: Add jsonrpc-glib.

* gnu/packages/gnome.scm: (jsonrpc-glib) New variable.

gnu: zrythm: Update to 0.8.200.

* gnu/packages/music.scm (zrythm): Update to 0.8.200,
[inputs]: add guile.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>

gnu: Add emacs-highlight-indent-guides.

* gnu/packages/emacs-xyz.scm (emacs-highlight-indent-guides): New variable.

gnu: Add emacs-form-feed.

* gnu/packages/emacs-xyz.scm (emacs-form-feed): New variable.

gnu: Add tuir.

* gnu/packages/syndication.scm (tuir): New variable.

gsm: Add the -fPIC compiler option.

This is necessary for building mediastream2 (a dependency of Linphone).

* gnu/packages/audio.scm (gsm): Add the default CCFLAGS as a make flag, and
prepend -fPIC to these.  Pass INSTALL_ROOT as a make flag as well, which
removes the need to use substitute* in a phase.

gnu: Add xplanet.

* gnu/packages/patches/xplanet-1.3.1-cxx11-eof.patch,
gnu/packages/patches/xplanet-1.3.1-libdisplay_DisplayOutput.cpp.patch,
gnu/packages/patches/xplanet-1.3.1-libimage_gif.c.patch,
gnu/packages/patches/xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch: New
files.
* gnu/packages/astronomy.scm (xplanet): New variable.
[source]: Use patches.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>

gnu: nfs-utils: Fix the shebangs of the Python based tools.

While attempting to debug NFS with 'mountstats' and other Python based tools,
I was greeted by the error:

  bash: /run/current-system/profile/sbin/mountstats: /usr/bin/python: bad
  interpreter: No such file or directory

Add python-wrapper, so that the Python shebangs get rewritten correctly.

* gnu/packages/nfs.scm (nfs-utils)[inputs]: Add python-wrapper.

gnu: frescobaldi: Update to 3.1.1.

* gnu/packages/music.scm (frescobaldi): Update to 3.1.1.

gnu: rosegarden: Update to 19.12.

* gnu/packages/music.scm (rosegarden): Update to 19.12.

gnu: lilypond: Update to 2.20.0.

* gnu/packages/music.scm (lilypond): Update to 2.20.0.
[native-inputs]: Use texi2html-1.82 instead of texi2html.

gnu: Add texi2html-1.82.

* gnu/packages/texinfo.scm (texi2html-1.82): New variable.

store: 'with-store' uses 'with-exception-handler'.

This ensures the stack is not unwound before the exception is re-thrown,
as was the case since 8ed597f4a261fe188de82cd1f5daed83dba948eb, leading
to '&store-protocol-error' being uncaught by 'with-error-handling'
in (guix scripts build) & co.

* guix/store.scm (call-with-store): Define 'thunk'.  Add 'cond-expand'
to use 'with-exception-handler' on 'guile-3' and 'catch' otherwise.

gnu: cross-base: Remove unneeded 'let'.

This is a followup to 102d307520dee27a40feb1ca5a699763a2f3aefe.

* gnu/packages/cross-base.scm (cross-libc): Remove (let ((libc libc)) …).

gnu: hydrogen: Update to 1.0.0-beta2.

* gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta2.
[native-inputs]: Add qttools.
[inputs]: Add liblo and pulseaudio, remove libtar.

gnu: denemo: Update to 2.3.0.

* gnu/packages/music.scm (denemo): Update to 2.3.0.
[arguments]: Augment `check' phase for tests to pass.  Remove unnecessary
phase.
[native-inputs]: Add diffutils.

gnu: mingw: Add mingw-w64 reproducibility patches.

These patches were originally found at the debian mingw-w64 team's
mingw-w64 repo, and should improve the reproducibility of our mingw-w64
toolchain.

* gnu/packages/patches/mingw-w64-dlltool-temp-prefix.patch: New file.
* gnu/packages/patches/mingw-w64-reproducible-gendef.patch: New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/mingw.scm (make-mingw-w64): Apply patches.

gnu: gparted: Make some inputs native.

* gnu/packages/disk.scm (gparted)[inputs]: Move yelp-tools from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

system: Don’t create a module database when no modules are available.

* gnu/system.scm (operating-system-directory-base-entries): Don't create
a module database when no modules are available.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: rubber: Make some inputs native.

* gnu/packages/tex.scm (rubber)[inputs]: Move texinfo from here...
[native-inputs]: ...to this new field.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: scotch: Make some inputs native.

* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here...
[native-inputs]: ...to this new field.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: telegram-purple: Make some inputs native.

* gnu/packages/telephony.scm (telegram-purple)[inputs]: Move gettext from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: jami: Make some inputs native.

* gnu/packages/telephony.scm (jami)[inputs]: Move gettext from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: libkate: Make some inputs native.

* gnu/packages/xiph.scm (libkate)[inputs]: Move bison from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: man-db: Make some inputs native.

* gnu/packages/man.scm (man-db)[inputs]: Move flex from here...
[native-inputs]: ...to here.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: qgis: Fix some plugins.

* gnu/packages/geo.scm (qgis)[arguments]: Add a 'wrap-gis' phase to set the
  environment variables required by some plugins.

tests: Adjust '--with-commit' test for tags.

This is a followup to efa578ecaece67366b4b0e2266de7c2faaa4ae54.

* tests/guix-build-branch.sh: Adjust '--with-commit=guile-gcrypt=v0.1.0'
test to expect the tag ID rather than the commit ID.

store: 'with-store' doesn't close the store upon abort.

Fixes <https://bugs.gnu.org/40428>.
Reported by Marius Bakke <mbakke@fastmail.com> and 白い熊.

Regression introduced with the first uses of 'with-build-handler' in
commit 62195b9a8fd6846117c5d7698842748300d13e31 and subsequent.

* guix/store.scm (call-with-store): Use 'catch #t' instead of
'dynamic-wind'.  This ensures STORE remains open when a non-local exit
other than an exception occurs, such as an abort to the build handler
prompt.
* tests/store.scm ("with-build-handler + with-store"): New test.

maint: Remove unsupported cross-compilation jobs from 'release-manifest.scm'.

* etc/release-manifest.scm (%packages-to-cross-build-for-mingw): New
variable.
(%cross-manifest): Use it.  Remove "riscv64-linux-gnu" from %CROSS-TARGETS.

gnu: ocaml-menhir: Update to 20190626.

* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20190626.

gnu: Replace uses of 'gettext' with 'gettext-minimal'.

* gnu/packages/cdrom.scm (dvdstyler)[native-inputs]: Change from GNU-GETTEXT
to GETTEXT-MINIMAL.
* gnu/packages/emulators.scm (dolphin-emu)[native-inputs]: Likewise.
* gnu/packages/engineering.scm (lepton-eda, kicad, kicad-i18l)[native-inputs]:
Likewise.
* gnu/packages/games.scm (quadrapassel, edgar)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (eog-plugins, workrave, geary)[native-inputs]: Likewise.
* gnu/packages/guile-xyz.scm (guile-gi, emacsy)[native-inputs]: Likewise.
* gnu/packages/image.scm (gpick)[native-inputs]: Likewise.
* gnu/packages/messaging.scm (telegram-purple)[native-inputs]: Likewise.
* gnu/packages/music.scm (fmit)[native-inputs]: Likewise.
* gnu/packages/package-management.scm (flatpak)[native-inputs]: Likewise.
* gnu/packages/patchutils.scm (quilt)[native-inputs]: Likewise.
* gnu/packages/photo.scm (hugin)[native-inputs]: Likewise.
* gnu/packages/security-token.scm (eid-mw)[native-inputs]: Likewise.
* gnu/packages/telephony.scm (jami)[native-inputs]: Likewise.
* gnu/packages/texinfo.scm (pinfo)[native-inputs]: Likewise.
* gnu/packages/vulkan.scm (vkd3d)[native-inputs]: Likewise.
* gnu/packages/web.scm (cadaver)[native-inputs]: Likewise.

gnu: cadaver: Build with OpenSSL 1.0.

* gnu/packages/web.scm (cadaver)[inputs]: Change from OPENSSL to OPENSSL-1.0.

gnu: Add r-asd.

* gnu/packages/cran.scm (r-asd): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: c-reduce: Make some inputs native.

* gnu/packages/debug.scm (c-reduce)[inputs]: Move flex from here...
[native-inputs]: ...to this new field.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>

gnu: ell: Make some inputs native.

* gnu/packages/linux.scm (ell)[inputs]: Move libtool from here...
[native-inputs]: ...to here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>

gnu: dico: Make some inputs native.

* gnu/packages/dico.scm (dico)[inputs]: Move groff from here...
[native-inputs]: ...to this new field.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>

gnu: a2ps: Make some inputs native.

* gnu/packages/pretty-print.scm (a2ps)[inputs]: Move groff from here...
[native-inputs]: ...to here.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>

gnu: gnome-online-accounts: Update to 3.36.0.

* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.36.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: gnome-online-miners: Update to 3.34.0.

* gnu/packages/gnome.scm (gnome-online-miners): Update to 3.34.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: Deprecate emacs-modus-themes.

* gnu/package/emacs-xyz.scm (emacs-modus-themes): Deprecate it.

gnu: Add emacs-modus-operandi-theme.

* gnu/packages/emacs-xyz.scm (emacs-modus-operandi-theme): New variable.

gnu: Add emacs-modus-vivendi-theme.

* gnu/packages/emacs-xyz.scm (emacs-modus-vivendi-theme): New variable.

gnu: spandsp: Disable parallel build.

The build could otherwise fail non-deterministically.

Reported-by: Raghav Gururajan <raghavgururajan@disroot.org>
* gnu/packages/telephony.scm (spandsp)[arguments]: Set parallel-build? to
false.

gnu: icecat: Update to 68.6.1-guix0-preview1 [security fixes].

Includes fixes for CVE-2020-6819 and CVE-2020-6820.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.

gnu: Add linux-libre-arm64-generic-5.6.

* gnu/packages/linux (linux-libre-arm64-generic-5.6): New variable.

gnu: Add linux-libre-arm-generic-5.6.

* gnu/packages/linux (linux-libre-arm-generic-5.6): New variable.

gnu: Add linux-libre 5.6.2.

* gnu/packages/linux (deblob-scripts-5.6): New variable.
  (linux-libre-5.6-version): New variable.
  (linux-libre-5.6-pristine-source): New variable.
  (linux-libre-5.6-source): New variable.
  (linux-libre-headers-5.6): New variable.
  (linux-libre-5.6): New variable.

gnu: linux-libre: Update to 5.4.30.

* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.30.
(linux-libre-5.4-pristine-source): Update hash.

gnu: linux-libre@4.19: Update to 4.19.114.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.114.
(linux-libre-4.19-pristine-source): Update hash.

gnu: linux-libre@4.14: Update to 4.14.175.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.175.
(linux-libre-4.14-pristine-source): Update hash.

gnu: linux-libre@4.9: Update to 4.9.218.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.218.
(linux-libre-4.9-pristine-source): Update hash.

gnu: linux-libre@4.4: Update to 4.4.218.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.218.
(linux-libre-4.4-pristine-source): Update hash.

gnu: cross-base: Add 'package-with-patches'.

This is a followup to c1c50cb5b099897a18e4cd8c27970cb45a7c3a94.

* gnu/packages/cross-base.scm (package-with-patch): Rename to...
(package-with-patches): ... this, and take a list of patches.
(package-with-extra-patches): Use it.
(cross-binutils): Use 'search-patches' instead of 'search-patch'.

pack: Pass the cross-compilation target to 'run-with-store'.

This ensures '%current-target-system' is correctly bound upfront, which
some packages rely on.

* guix/scripts/pack.scm (guix-pack): Pass #:target to 'run-with-store'.

gnu: cross-base: Fix PACKAGE-WITH-EXTRA-PATCHES

This also removes the execute bit from the patches added. Not sure how
or why those were set in the first place.

* gnu/packages/cross-base.scm (package-with-extra-patches): Imitate
PACKAGE-WITH-PATCH instead of using it.
* gnu/packages/patches/binutils-mingw-w64-reproducible-import-libraries.patch:
Remove execute bit.
* gnu/packages/patches/binutils-mingw-w64-specify-timestamp.patch:
Remove execute bit.

gnu: ungoogled-chromium: Update to 80.0.3987.163-0.516e2d9.

* gnu/packages/chromium.scm (%chromium-version): Set to 80.0.3987.163.
(%chromium-origin): Update hash.

gnu: Add python-cantools.

* gnu/packages/python-xyz.scm (python-cantools): New variable.

gnu: Add python-bitstruct.

* gnu/packages/python-xyz.scm (python-bitstruct): New variable.

gnu: Add python-diskcache.

* gnu/packages/python-xyz.scm (python-diskcache): New variable.

gnu: Add python-can.

* gnu/packages/python-xyz.scm (python-can): New variable.

gnu: Add python-aenum.

* gnu/packages/python-xyz.scm (python-aenum): New variable.

gnu: Add python-textparser.

* gnu/packages/python-xyz.scm (python-textparser): New variable.

gnu: Add perl-data-entropy.

* gnu/packages/perl.scm (perl-data-entropy): New variable.

gnu: Add perl-crypt-rijndael.

* gnu/packages/perl.scm (perl-crypt-rijndael): New variable.

gnu: Add perl-data-float.

* gnu/packages/perl.scm (perl-data-float): New variable.

gnu: Add perl-http-lite.

* gnu/packages/web.scm (perl-http-lite): New variable.

gnu: Remove bctoolbox and ortp.

* gnu/packages/telephony.scm (bctoolbox): Delete variable.
(ortp): Delete variable.
* gnu/packages/audio.scm (bluez-alsa)[inputs]: Update ortp reference.
* gnu/packages/kde-internet.scm (kopete)[inputs]: Update ortp reference.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>

gnu: Add qalculate-gtk.

* gnu/packages/maths.scm (qalculate-gtk): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: Add libqalculate.

* gnu/packages/maths.scm (libqalculate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>

gnu: gnome-initial-setup: Record file name of 'gsd-keyboard-display'.

* gnu/packages/gnome.scm (gnome-initial-setup)[arguments]: Add
'set-gkbd-file-name' phase.
[inputs]: Add LIBGNOMEKBD.