jackhill/guix/guix.git
3 years agognu: Remove bsdiff traces.
Marius Bakke [Sat, 19 Jun 2021 15:17:02 +0000 (17:17 +0200)]
gnu: Remove bsdiff traces.

This is a follow-up to 373c7b5791acd8f377455be47260948b843dd5db.

* gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

3 years agognu: efivar: Adjust for GCC 10.
Marius Bakke [Sat, 19 Jun 2021 12:17:52 +0000 (14:17 +0200)]
gnu: efivar: Adjust for GCC 10.

* gnu/packages/patches/efivar-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New
fields.
[arguments]: Use CC-FOR-TARGET while at it.

3 years agognu: jfsutils: Adjust for GCC 10.
Marius Bakke [Fri, 18 Jun 2021 22:21:54 +0000 (00:21 +0200)]
gnu: jfsutils: Adjust for GCC 10.

* gnu/packages/patches/jfsutils-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/file-systems.scm (jfsutils)[source](patches): Add it.

3 years agognu: isc-dhcp: Adjust for GCC 10.
Marius Bakke [Fri, 18 Jun 2021 21:53:53 +0000 (23:53 +0200)]
gnu: isc-dhcp: Adjust for GCC 10.

* gnu/packages/patches/isc-dhcp-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (isc-dhcp)[source](patches): New field.

3 years agognu: ath9k-htc-firmware: Adjust for GCC 10.
Marius Bakke [Fri, 18 Jun 2021 21:52:14 +0000 (23:52 +0200)]
gnu: ath9k-htc-firmware: Adjust for GCC 10.

* gnu/packages/patches/ath9k-htc-firmware-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[source](patches): Add it.

3 years agognu: gpm: Adjust for GCC 10.
Marius Bakke [Fri, 18 Jun 2021 21:50:59 +0000 (23:50 +0200)]
gnu: gpm: Adjust for GCC 10.

* gnu/packages/linux.scm (gpm)[source](modules, snippet): New fields.

3 years agognu: QEMU: Adjust for Sphinx 4.0.
Marius Bakke [Thu, 17 Jun 2021 17:17:17 +0000 (19:17 +0200)]
gnu: QEMU: Adjust for Sphinx 4.0.

* gnu/packages/patches/qemu-sphinx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu)[source](patches): Add it.

3 years agognu: QEMU: Remove obsolete workaround.
Marius Bakke [Thu, 17 Jun 2021 13:59:26 +0000 (15:59 +0200)]
gnu: QEMU: Remove obsolete workaround.

* gnu/packages/virtualization.scm (qemu)[arguments]: Remove phase hide-glibc.

3 years agognu: linux-libre 5.4: Update to 5.4.127.
Leo Famulari [Sat, 19 Jun 2021 13:18:20 +0000 (09:18 -0400)]
gnu: linux-libre 5.4: Update to 5.4.127.

* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.127.
(linux-libre-5.4-pristine-source): Update hash.

3 years agognu: linux-libre 5.10: Update to 5.10.43.
Leo Famulari [Sat, 19 Jun 2021 13:18:07 +0000 (09:18 -0400)]
gnu: linux-libre 5.10: Update to 5.10.43.

* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.43.
(linux-libre-5.10-pristine-source): Update hash.

3 years agognu: linux-libre: Update to 5.12.12.
Leo Famulari [Sat, 19 Jun 2021 13:17:40 +0000 (09:17 -0400)]
gnu: linux-libre: Update to 5.12.12.

* gnu/packages/linux.scm (linux-libre-5.12-version): Update to 5.12.12.
(linux-libre-5.12-pristine-source): Update hash.

3 years agognu: linux-libre 4.4: Update to 4.4.273.
Leo Famulari [Wed, 16 Jun 2021 16:45:33 +0000 (12:45 -0400)]
gnu: linux-libre 4.4: Update to 4.4.273.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.273.
(linux-libre-4.4-pristine-source): Update hash.

3 years agognu: linux-libre 4.9: Update to 4.9.273.
Leo Famulari [Wed, 16 Jun 2021 16:45:21 +0000 (12:45 -0400)]
gnu: linux-libre 4.9: Update to 4.9.273.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.273.
(linux-libre-4.9-pristine-source): Update hash.

3 years agognu: linux-libre 4.14: Update to 4.14.237.
Leo Famulari [Wed, 16 Jun 2021 16:45:09 +0000 (12:45 -0400)]
gnu: linux-libre 4.14: Update to 4.14.237.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.237.
(linux-libre-4.14-pristine-source): Update hash.

3 years agognu: linux-libre 4.19: Update to 4.19.195.
Leo Famulari [Wed, 16 Jun 2021 16:44:53 +0000 (12:44 -0400)]
gnu: linux-libre 4.19: Update to 4.19.195.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.195.
(linux-libre-4.19-pristine-source): Update hash.

3 years agognu: Add missing imports to (gnu packages vpn).
Tobias Geerinckx-Rice [Sat, 19 Jun 2021 11:01:56 +0000 (13:01 +0200)]
gnu: Add missing imports to (gnu packages vpn).

This follows up on c85ed0e758d7fa230c08dba6b95c65ceac098d50.

* gnu/packages/vpn.scm: Import (gnu packages curl), (gnu packages gnome),
and (gnu packages multiprecision).
* gnu/packages/networking.scm: Remove unused
(gnu packages multiprecision) import.

f

3 years agognu: cubicle: Make deterministic.
Julien Lepiller [Sat, 19 Jun 2021 10:53:32 +0000 (12:53 +0200)]
gnu: cubicle: Make deterministic.

* gnu/packages/ocaml.scm (cubicle)[arguments]: Remove build date from
resulting binary.

3 years agognu: cubicle: Fix build with newer ocaml-num.
Julien Lepiller [Sat, 19 Jun 2021 10:52:17 +0000 (12:52 +0200)]
gnu: cubicle: Fix build with newer ocaml-num.

* gnu/packages/ocaml.scm (cubicle)[arguments]: Adjust Makefile for
changes in ocaml-num.

3 years agognu: Move strongswan to (gnu packages vpn).
Tobias Geerinckx-Rice [Sat, 19 Jun 2021 10:24:04 +0000 (12:24 +0200)]
gnu: Move strongswan to (gnu packages vpn).

See <https://logs.guix.gnu.org/guix/2021-06-19.log#015517>.

* gnu/packages/networking.scm (strongswan): Move from here…
* gnu/packages/vpn.scm (strongswan): …to here.

3 years agognu: Update ocaml-mdx to 1.9.0.
pukkamustard [Sat, 19 Jun 2021 08:53:02 +0000 (10:53 +0200)]
gnu: Update ocaml-mdx to 1.9.0.

* gnu/packages/ocaml.scm (ocaml-mdx): Update to 1.9.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
3 years agoservices: guix: Authorize 'bordeaux.guix.gnu.org.pub' by default.
Jack Hill [Sat, 19 Jun 2021 05:24:26 +0000 (01:24 -0400)]
services: guix: Authorize 'bordeaux.guix.gnu.org.pub' by default.

This follows on from the changes in 4985a4272497bf9ba87a2190353d915da9b55906.

* gnu/services/base.scm (%default-authorized-guix-keys): Add
bordeaux.guix.gnu.org.pub.

Signed-off-by: Christopher Baines <mail@cbaines.net>
3 years agognu: Add stmx.
Pierre Neidhardt [Sat, 19 Jun 2021 07:59:41 +0000 (09:59 +0200)]
gnu: Add stmx.

* gnu/packages/lisp-xyz.scm (cl-stmx, ecl-stmx, sbcl-stmx): New variables.

3 years agognu: Add ocaml-calendar.
Xinglu Chen [Thu, 17 Jun 2021 20:54:52 +0000 (22:54 +0200)]
gnu: Add ocaml-calendar.

* gnu/packages/ocaml.scm (ocaml-calendar): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
3 years agognu: libaom: Omit static library.
Tobias Geerinckx-Rice [Wed, 16 Jun 2021 14:21:14 +0000 (16:21 +0200)]
gnu: libaom: Omit static library.

* gnu/packages/video.scm (libaom)[arguments]: Add a
'delete-static-libraries phase to do so.

3 years agognu: libaom: Update to 3.1.1.
Tobias Geerinckx-Rice [Wed, 16 Jun 2021 14:20:47 +0000 (16:20 +0200)]
gnu: libaom: Update to 3.1.1.

* gnu/packages/video.scm (libaom): Update to 3.1.1.

3 years agognu: vcsh: Update to 1.20190621-4.
Tobias Geerinckx-Rice [Wed, 16 Jun 2021 14:11:24 +0000 (16:11 +0200)]
gnu: vcsh: Update to 1.20190621-4.

* gnu/packages/version-control.scm (vcsh): Update to 1.20190621-4.

3 years agognu: strongswan: Update to 5.9.2.
Domagoj Stolfa [Fri, 18 Jun 2021 21:25:22 +0000 (22:25 +0100)]
gnu: strongswan: Update to 5.9.2.

* gnu/packages/networking.scm (strongswan): Update to 5.9.2.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
3 years agognu: curl@7.77.0: Provide a correct TLS priority string.
Ludovic Courtès [Fri, 18 Jun 2021 13:43:12 +0000 (15:43 +0200)]
gnu: curl@7.77.0: Provide a correct TLS priority string.

Fixes <https://bugs.gnu.org/49035>.

* gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.

3 years agognu: dune-bootstrap: Update to 2.8.5.
Xinglu Chen [Thu, 17 Jun 2021 19:15:53 +0000 (21:15 +0200)]
gnu: dune-bootstrap: Update to 2.8.5.

* gnu/packages/ocaml.scm (dune-bootstrap): Update to 2.8.5.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
3 years agognu: xdg-desktop-portal-wlr: Update to 0.4.0.
Andrew Tropin [Tue, 15 Jun 2021 16:53:27 +0000 (19:53 +0300)]
gnu: xdg-desktop-portal-wlr: Update to 0.4.0.

* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Update to 0.4.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
3 years agognu: xdg-desktop-portal: Update to 1.8.1 and honor XDG_DESKTOP_PORTAL_DIR.
Andrew Tropin [Tue, 15 Jun 2021 16:53:26 +0000 (19:53 +0300)]
gnu: xdg-desktop-portal: Update to 1.8.1 and honor XDG_DESKTOP_PORTAL_DIR.

* gnu/packages/freedesktop.scm (xdg-desktop-portal): Update to 1.8.1.
[arguments, native-search-paths]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
3 years agognu: pipewire: Update to 0.3.29.
Andrew Tropin [Tue, 15 Jun 2021 16:53:25 +0000 (19:53 +0300)]
gnu: pipewire: Update to 0.3.29.

* gnu/packages/linux.scm (pipewire): Update to 0.3.29.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
3 years agodoc: Clarify Git commit signing; fix typo.
Ludovic Courtès [Sun, 13 Jun 2021 10:09:40 +0000 (12:09 +0200)]
doc: Clarify Git commit signing; fix typo.

Suggested by Maxime Devos <maximedevos@telenet.be>
and Julien Lepiller <julien@lepiller.eu>.

* doc/contributing.texi (Commit Access): Clarify Git commit signing
setup and fix typo.

3 years agodoc: Explain more reasons for commit revocation.
Ludovic Courtès [Mon, 24 May 2021 20:38:18 +0000 (22:38 +0200)]
doc: Explain more reasons for commit revocation.

* doc/contributing.texi (Commit Revocation): Expound.

3 years agodoc: Add "Addressing Issues" section.
Ludovic Courtès [Mon, 24 May 2021 20:16:23 +0000 (22:16 +0200)]
doc: Add "Addressing Issues" section.

* doc/contributing.texi (Addressing Issues): New section.

Co-authored-by: Christopher Baines <mail@cbaines.net>
3 years agodoc: Structure the "Commit Access" section.
Ludovic Courtès [Mon, 24 May 2021 09:57:21 +0000 (11:57 +0200)]
doc: Structure the "Commit Access" section.

* doc/contributing.texi (Commit Access): Add introduction and section
heading.  Separate OpenPGP setup from commit policy.

3 years agoprofiles: Add "XAUTHORITY" to the precious variables.
Ludovic Courtès [Fri, 18 Jun 2021 10:44:47 +0000 (12:44 +0200)]
profiles: Add "XAUTHORITY" to the precious variables.

Suggested by Maxime Devos <maximedevos@telenet.be>.

* guix/profiles.scm (%precious-variables): Add "XAUTHORITY".

3 years agoprofiles: Add 'load-profile'.
Ludovic Courtès [Tue, 15 Jun 2021 08:02:48 +0000 (10:02 +0200)]
profiles: Add 'load-profile'.

* guix/profiles.scm (%precious-variables): New variable.
(purify-environment, load-profile): New procedures.
* guix/scripts/environment.scm (%precious-variables)
(purify-environment, create-environment): Remove.
(launch-environment): Call 'load-profile' instead of 'create-environment'.
* tests/profiles.scm ("load-profile"): New test.

3 years agolint: check-patch-headers: Recognize Git diffs.
Ludovic Courtès [Fri, 18 Jun 2021 10:02:12 +0000 (12:02 +0200)]
lint: check-patch-headers: Recognize Git diffs.

* guix/lint.scm (check-patch-headers): Add "diff --git " prefix.

3 years agobuild: Remove Guile 2.2 workaround.
Ludovic Courtès [Wed, 16 Jun 2021 12:25:41 +0000 (14:25 +0200)]
build: Remove Guile 2.2 workaround.

* build-aux/compile-all.scm <top level>: Remove Guile 2.2 workaround.

3 years agoimport: launchpad: Gracefully handle 404s from api.launchpad.net.
Ludovic Courtès [Tue, 15 Jun 2021 21:18:46 +0000 (23:18 +0200)]
import: launchpad: Gracefully handle 404s from api.launchpad.net.

Fixes <https://bugs.gnu.org/49031>.
Reported by Emad Alblueshi <emad.albloushi@gmail.com>.

* guix/import/launchpad.scm (latest-released-version): Gracefully handle
'json-fetch' returning #f.

3 years agognu: python-miniboa: Update to 1.0.8.
Arun Isaac [Fri, 18 Jun 2021 11:24:33 +0000 (16:54 +0530)]
gnu: python-miniboa: Update to 1.0.8.

* gnu/packages/python-xyz.scm (python-miniboa): Update to 1.0.8.

3 years agognu: guix: Update to 4985a42.
Christopher Baines [Fri, 18 Jun 2021 11:35:53 +0000 (12:35 +0100)]
gnu: guix: Update to 4985a42.

* gnu/packages/package-management.scm (guix): Update to 4985a42.

3 years agognu: Iosevka fonts: Update to 7.0.3.
Paul A. Patience [Fri, 18 Jun 2021 11:27:34 +0000 (13:27 +0200)]
gnu: Iosevka fonts: Update to 7.0.3.

* gnu/packages/fonts.scm (font-iosevka, font-iosevka-slab,
font-iosevka-term, font-iosevka-term-slab, font-iosevka-aile,
font-iosevka-curly, font-iosevka-curly-slab, font-iosevka-etoile):
Update to 7.0.3.
(font-iosevka-sparkle): Delete variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: lib2geom: Update to commit b29d60e4.
Boris A. Dekshteyn [Mon, 14 Jun 2021 13:32:13 +0000 (01:32 +1200)]
gnu: lib2geom: Update to commit b29d60e4.

* gnu/packages/graphics.scm (lib2geom): Update to commit
b29d60e49a58f4e8069544b44863b1a623e4ee59 (with inkscape 1.1 relased).

3 years agognu: inkscape: Update to version 1.1.
Boris A. Dekshteyn [Mon, 14 Jun 2021 13:27:44 +0000 (01:27 +1200)]
gnu: inkscape: Update to version 1.1.

* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1.
* gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agoStart enabling substitutes from bordeaux.guix.gnu.org.
Christopher Baines [Sat, 15 May 2021 10:02:36 +0000 (11:02 +0100)]
Start enabling substitutes from bordeaux.guix.gnu.org.

In addition to substitutes from ci.guix.gnu.org.  There are more changes that
can be made in the future, but these changes seem like a good start.

* config-daemon.ac (guix_substitute_urls): Add https://bordeaux.guix.gnu.org.
* guix/scripts/substitute.scm (%default-substitute-urls): Add
http://bordeaux.guix.gnu.org.
* guix/store.scm (%default-substitute-urls): Add bordeaux.guix.gnu.org.
* doc/guix.texi: Adjust accordingly.
* doc/contributing.texi: Adjust accordingly.

3 years agognu: Add font-overpass.
Sarah Morgensen via Guix-patches via [Thu, 17 Jun 2021 00:05:24 +0000 (17:05 -0700)]
gnu: Add font-overpass.

* gnu/packages/fonts.scm (font-overpass): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: Add xkb-switch.
Niklas Eklund [Fri, 18 Jun 2021 10:08:04 +0000 (12:08 +0200)]
gnu: Add xkb-switch.

* gnu/packages/xdisorg.scm (xkb-switch): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: Add emacs-flycheck-package.
Niklas Eklund [Tue, 15 Jun 2021 17:55:10 +0000 (19:55 +0200)]
gnu: Add emacs-flycheck-package.

*  gnu/emacs-xyz.scm (emacs-flycheck-package): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: Add emacs-package-build.
Xinglu Chen [Sun, 13 Jun 2021 13:47:16 +0000 (15:47 +0200)]
gnu: Add emacs-package-build.

* gnu/packages/emacs-xyz.scm (emacs-package-build): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
3 years agognu: giac: Update to 1.7.0-13.
Nicolas Goaziou [Fri, 18 Jun 2021 09:54:06 +0000 (11:54 +0200)]
gnu: giac: Update to 1.7.0-13.

* gnu/packages/algebra.scm (giac): Update to 1.7.0-13.

3 years agognu: emacs-evil-matchit: Update to 2.3.12.
Nicolas Goaziou [Fri, 18 Jun 2021 09:16:29 +0000 (11:16 +0200)]
gnu: emacs-evil-matchit: Update to 2.3.12.

* gnu/packages/emacs-xyz.scm (emacs-evil-matchit): Update to 2.3.12.

3 years agognu: emacs-org-ql: Update to 0.5.2.
Nicolas Goaziou [Fri, 18 Jun 2021 09:14:53 +0000 (11:14 +0200)]
gnu: emacs-org-ql: Update to 0.5.2.

* gnu/packages/emacs-xyz.scm (emacs-org-ql): Update to 0.5.2.
[arguments]<#:phases>: Remove unnecessary #t.

3 years agognu: emacs-epkg: Update to 3.3.1.
Nicolas Goaziou [Fri, 18 Jun 2021 09:08:35 +0000 (11:08 +0200)]
gnu: emacs-epkg: Update to 3.3.1.

* gnu/packages/emacs-xyz.scm (emacs-epkg): Update to 3.3.1.

3 years agognu: emacs-closql: Update to 1.0.6.
Nicolas Goaziou [Fri, 18 Jun 2021 09:08:29 +0000 (11:08 +0200)]
gnu: emacs-closql: Update to 1.0.6.

* gnu/packages/emacs-xyz.scm (emacs-closql): Update to 1.0.6.

3 years agognu: emacs-forge: Update to 0.2.1.
Nicolas Goaziou [Fri, 18 Jun 2021 09:03:45 +0000 (11:03 +0200)]
gnu: emacs-forge: Update to 0.2.1.

* gnu/packages/emacs-xyz.scm (emacs-forge): Update to 0.2.1.

3 years agognu: emacs-transient: Update to 0.3.5.
Nicolas Goaziou [Fri, 18 Jun 2021 09:01:46 +0000 (11:01 +0200)]
gnu: emacs-transient: Update to 0.3.5.

* gnu/packages/emacs-xyz.scm (emacs-transient): Update to 0.3.5.

3 years agognu: thinkfan: Update to 1.2.2.
Nicolas Goaziou [Fri, 18 Jun 2021 08:55:19 +0000 (10:55 +0200)]
gnu: thinkfan: Update to 1.2.2.

* gnu/packages/linux.scm (thinkfan): Update to 1.2.2.

3 years agognu: tectonic: Update to 0.6.4.
Nicolas Goaziou [Fri, 18 Jun 2021 08:49:49 +0000 (10:49 +0200)]
gnu: tectonic: Update to 0.6.4.

* gnu/packages/rust-apps.scm (tectonic): Update to 0.6.4.

3 years agognu: emacs-emms: Update to 7.4.
Nicolas Goaziou [Fri, 18 Jun 2021 08:48:59 +0000 (10:48 +0200)]
gnu: emacs-emms: Update to 7.4.

* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.4.

3 years agognu: emacs-posframe: Update to 1.0.4.
Nicolas Goaziou [Fri, 18 Jun 2021 08:47:14 +0000 (10:47 +0200)]
gnu: emacs-posframe: Update to 1.0.4.

* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.0.4.

3 years agognu: tectonic: Update to 0.6.2.
Nicolas Goaziou [Thu, 17 Jun 2021 17:33:34 +0000 (19:33 +0200)]
gnu: tectonic: Update to 0.6.2.

* gnu/packages/rust-apps.scm (tectonic): Update to 0.6.2.

3 years agognu: Add r-chicago.
Ricardo Wurmus [Thu, 17 Jun 2021 12:57:47 +0000 (14:57 +0200)]
gnu: Add r-chicago.

* gnu/packages/bioconductor.scm (r-chicago): New variable.

3 years agognu: Add r-delaporte.
Ricardo Wurmus [Thu, 17 Jun 2021 12:57:26 +0000 (14:57 +0200)]
gnu: Add r-delaporte.

* gnu/packages/cran.scm (r-delaporte): New variable.

3 years agognu: r-gviz: Update to 1.36.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:42 +0000 (14:24 +0200)]
gnu: r-gviz: Update to 1.36.1.

* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.1.

3 years agognu: r-scater: Update to 1.20.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:42 +0000 (14:24 +0200)]
gnu: r-scater: Update to 1.20.1.

* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.1.

3 years agognu: r-rhdf5lib: Update to 1.14.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-rhdf5lib: Update to 1.14.1.

* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.1.

3 years agognu: r-biocstyle: Update to 2.20.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-biocstyle: Update to 2.20.1.

* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.1.

3 years agognu: r-enrichplot: Update to 1.12.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-enrichplot: Update to 1.12.1.

* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.1.

3 years agognu: r-biocsingular: Update to 1.8.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-biocsingular: Update to 1.8.1.

* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.8.1.

3 years agognu: r-diffbind: Update to 3.2.2.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-diffbind: Update to 3.2.2.

* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.2.

3 years agognu: r-biostrings: Update to 2.60.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-biostrings: Update to 2.60.1.

* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.1.

3 years agognu: r-biomart: Update to 2.48.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:41 +0000 (14:24 +0200)]
gnu: r-biomart: Update to 2.48.1.

* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.1.
[propagated-inputs]: Add r-xml2.

3 years agognu: r-annotationdbi: Update to 1.54.1.
Ricardo Wurmus [Thu, 17 Jun 2021 12:24:35 +0000 (14:24 +0200)]
gnu: r-annotationdbi: Update to 1.54.1.

* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.54.1.

3 years agognu: liba52: Note the type of stream.
Tobias Geerinckx-Rice [Wed, 16 Jun 2021 11:51:11 +0000 (13:51 +0200)]
gnu: liba52: Note the type of stream.

* gnu/packages/video.scm (liba52)[synopsis, description]: A is for audio.

3 years agodoc: Update QEMU command line.
Tobias Geerinckx-Rice [Thu, 17 Jun 2021 09:18:01 +0000 (11:18 +0200)]
doc: Update QEMU command line.

* doc/guix.texi (Invoking guix system): Substitute ‘-nic’ for the
obsolete ‘-net’.

3 years agognu: bcachefs-tools: Update to 0.1-8.fe1bb39.
Tobias Geerinckx-Rice [Wed, 16 Jun 2021 23:13:10 +0000 (01:13 +0200)]
gnu: bcachefs-tools: Update to 0.1-8.fe1bb39.

* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-8.fe1bb39.

3 years agoinstaller: Improve the installation device detection method.
Mathieu Othacehe [Thu, 17 Jun 2021 09:00:26 +0000 (11:00 +0200)]
installer: Improve the installation device detection method.

Fixes: <https://issues.guix.gnu.org/47780>.

* gnu/installer/parted.scm (installation-device): New method.
(non-install-devices): Remove devices which are reported as read-only by
parted or which path is identical to the installation device path returned by
the above method.

3 years agognu: guile-parted: Update to 0.0.5.
Mathieu Othacehe [Thu, 17 Jun 2021 08:08:15 +0000 (10:08 +0200)]
gnu: guile-parted: Update to 0.0.5.

* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.5.

3 years agognu: openntpd: Get libressl version from the inputs.
Brice Waegeneire [Thu, 17 Jun 2021 06:28:14 +0000 (08:28 +0200)]
gnu: openntpd: Get libressl version from the inputs.

* gnu/packages/ntp.scm (openntpd)[arguments]: Get libressl version from
the package inputs.

3 years agognu: libressl: Remove search paths.
Brice Waegeneire [Fri, 11 Jun 2021 21:14:47 +0000 (23:14 +0200)]
gnu: libressl: Remove search paths.

Unlike OpenSSL, LibreSSL hardcode it's certificate bundle and doesn't
allow to specify it through a environment variable.

* gnu/packages/tls.scm (libressl)[configure-flags]: Specify OpenSSL
configuration directory.
[native-search-paths]: Remove it.
* gnu/packages/ntp.scm (openntpd)[configure-flags]: Adjust CAcert
location.

3 years agognu: brightnessctl: Add elogind support.
Brice Waegeneire [Fri, 4 Jun 2021 18:42:28 +0000 (20:42 +0200)]
gnu: brightnessctl: Add elogind support.

* gnu/packages/patches/brightnessctl-elogind-support.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/linux.scm (brightnessctl)[source]: Apply it.
[make-flags]: Enable logind support.
[native-inputs]: Add pkg-config.
[inputs]: Add elogind.

3 years agopack: Fix the system value passed to build-docker-image.
Maxim Cournoyer [Thu, 17 Jun 2021 01:34:48 +0000 (21:34 -0400)]
pack: Fix the system value passed to build-docker-image.

Before this change, the system value would be passed as x86_64 when using a
i686-linux emulated system, e.g.:

  $ guix environment --system=i686-linux --ad-hoc  guile -- \
      guile -c '(display (utsname:machine (uname))) (newline)'
  x86_64

This change uses the Guile builtin %host-type variable, which doesn't have
this problem:

  $ guix environment --system=i686-linux --ad-hoc guile -- \
      guile -c '(display %host-type) (newline)'
  i686-unknown-linux-gnu

* guix/scripts/pack.scm (docker-image)[#:system] Use %host-type as a fall-back
when target is not defined.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
3 years agognu: Add undbx.
Ricardo Wurmus [Wed, 16 Jun 2021 22:00:34 +0000 (00:00 +0200)]
gnu: Add undbx.

* gnu/packages/mail.scm (undbx): New variable.

3 years agognu: ffmpeg: Build with the latest SRT.
Marius Bakke [Wed, 16 Jun 2021 17:06:17 +0000 (19:06 +0200)]
gnu: ffmpeg: Build with the latest SRT.

* gnu/packages/video.scm (ffmpeg)[inputs]: Change from SRT-1.4.1 to SRT.

3 years agognu: ungoogled-chromium: Update to 91.0.4472.106-0.bd0ffd1.
Marius Bakke [Wed, 16 Jun 2021 16:28:14 +0000 (18:28 +0200)]
gnu: ungoogled-chromium: Update to 91.0.4472.106-0.bd0ffd1.

* gnu/packages/chromium.scm (%chromium-version): Set to 91.0.4472.106.
(ungoogled-chromium)[source]: Update checksum.

3 years agognu: node: Prepare for ICU 69.
Marius Bakke [Wed, 16 Jun 2021 16:27:25 +0000 (18:27 +0200)]
gnu: node: Prepare for ICU 69.

* gnu/packages/node.scm (node)[source](snippet): Add substitution.

3 years agognu: lagrange: Update to 1.5.2.
Solene Rapenne [Tue, 15 Jun 2021 16:58:52 +0000 (18:58 +0200)]
gnu: lagrange: Update to 1.5.2.

* gnu/packages/web-browsers.scm (lagrange): Update to 1.5.2.

Signed-off-by: Brice Waegeneire <brice@waegenei.re>
3 years agognu: weechat: Update to 3.2.
Solene Rapenne [Wed, 16 Jun 2021 06:56:54 +0000 (08:56 +0200)]
gnu: weechat: Update to 3.2.

* gnu/packages/irc.scm (weechat): Update to 3.2.

Signed-off-by: Brice Waegeneire <brice@waegenei.re>
3 years agognu: HexChat: Add Libera Chat to the list of networks.
Leo Famulari [Tue, 15 Jun 2021 14:12:42 +0000 (10:12 -0400)]
gnu: HexChat: Add Libera Chat to the list of networks.

* gnu/packages/patches/hexchat-add-libera-chat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/messaging.scm (hexchat)[source]: Use it.

3 years agognu: xterm: Update to 368.
Matthew James Kraai [Tue, 15 Jun 2021 03:40:45 +0000 (20:40 -0700)]
gnu: xterm: Update to 368.

* gnu/packages/xorg.scm (xterm): Update to 368.

Signed-off-by: Brice Waegeneire <brice@waegenei.re>
3 years agognu: nushell: Update to 0.32.0.
Nicolas Goaziou [Wed, 16 Jun 2021 10:45:40 +0000 (12:45 +0200)]
gnu: nushell: Update to 0.32.0.

* gnu/packages/shells.scm (nushell): Update to 0.32.0.
(rust-nu-ansi-term-0.32):
(rust-nu-cli-0.32):
(rust-nu-command-0.32):
(rust-nu-data-0.32):
(rust-nu-engine-0.32):
(rust-nu-errors-0.32):
(rust-nu-json-0.32):
(rust-nu-parser-0.32):
(rust-nu-plugin-0.32):
(rust-nu-plugin-binaryview-0.32):
(rust-nu-plugin-chart-0.32):
(rust-nu-plugin-fetch-0.32):
(rust-nu-plugin-from-bson-0.32):
(rust-nu-plugin-from-sqlite-0.32):
(rust-nu-plugin-inc-0.32):
(rust-nu-plugin-match-0.32):
(rust-nu-plugin-post-0.32):
(rust-nu-plugin-query-json-0.32):
(rust-nu-plugin-sys-0.32):
(rust-nu-plugin-textview-0.32):
(rust-nu-plugin-to-bson-0.32):
(rust-nu-plugin-to-sqlite-0.32):
(rust-nu-plugin-tree-0.32):
(rust-nu-plugin-xpath-0.32):
(rust-nu-pretty-hex-0.32):
(rust-nu-protocol-0.32):
(rust-nu-stream-0.32):
(rust-nu-test-support-0.32):
(rust-nu-value-ext-0.32): Update to 0.32.0.

3 years agognu: Add rust-polars-0.13.
Nicolas Goaziou [Tue, 15 Jun 2021 20:32:42 +0000 (22:32 +0200)]
gnu: Add rust-polars-0.13.

* gnu/packages/crates-io.scm (rust-polars-0.13): New variable.

3 years agognu: Add rust-polars-lazy-0.13.
Nicolas Goaziou [Tue, 15 Jun 2021 20:31:47 +0000 (22:31 +0200)]
gnu: Add rust-polars-lazy-0.13.

* gnu/packages/crates-io.scm (rust-polars-lazy-0.13): New variable.

3 years agognu: Add rust-polars-io-0.13.
Nicolas Goaziou [Tue, 15 Jun 2021 20:30:56 +0000 (22:30 +0200)]
gnu: Add rust-polars-io-0.13.

* gnu/packages/crates-io.scm (rust-polars-io-0.13): New variable.

3 years agognu: Add rust-polars-core-0.13.
Nicolas Goaziou [Tue, 15 Jun 2021 20:25:14 +0000 (22:25 +0200)]
gnu: Add rust-polars-core-0.13.

* gnu/packages/crates-io.scm (rust-polars-core-0.13): New variable.

3 years agognu: Add rust-polars-arrow-0.13.
Nicolas Goaziou [Tue, 15 Jun 2021 20:22:46 +0000 (22:22 +0200)]
gnu: Add rust-polars-arrow-0.13.

* gnu/packages/crates-io.scm (rust-polars-arrow-0.13): New variable.

3 years agognu: Add rust-ndarray-0.13.
Nicolas Goaziou [Tue, 15 Jun 2021 20:19:54 +0000 (22:19 +0200)]
gnu: Add rust-ndarray-0.13.

* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable.
(rust-ndarray-0.12): Inherit from above.
* gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file.
* gnu/local.mk: Register new file.

3 years agognu: Add rust-comfy-table-1.
Nicolas Goaziou [Tue, 15 Jun 2021 12:17:23 +0000 (14:17 +0200)]
gnu: Add rust-comfy-table-1.

* gnu/packages/crates-io.scm (rust-comfy-table-1): New variable.