jackhill/guix/guix.git
4 years agoMerge branch 'core-updates'
Ludovic Courtès [Tue, 8 Oct 2019 09:23:22 +0000 (11:23 +0200)]
Merge branch 'core-updates'

4 years agognu: mariadb: Build with GCC 5 on ARMv7.
Marius Bakke [Tue, 8 Oct 2019 08:16:04 +0000 (10:16 +0200)]
gnu: mariadb: Build with GCC 5 on ARMv7.

Fixes <https://bugs.gnu.org/37605>.

* gnu/packages/databases.scm (mariadb)[native-inputs]: Add GCC-5 when the
current system is ARMv7.

4 years agognu: Add serapeum.
Pierre Neidhardt [Tue, 8 Oct 2019 08:03:54 +0000 (10:03 +0200)]
gnu: Add serapeum.

* gnu/packages/lisp.scm (cl-serapeum, ecl-serapeum, sbcl-serapeum): New variables.

4 years agognu: Add unknown-horizons.
Christopher Baines [Thu, 8 Aug 2019 20:23:52 +0000 (21:23 +0100)]
gnu: Add unknown-horizons.

* gnu/packages/games.scm (unknown-horizons): New variable.

4 years agognu: Add fifengine.
Christopher Baines [Thu, 8 Aug 2019 20:23:51 +0000 (21:23 +0100)]
gnu: Add fifengine.

* gnu/packcages/games.scm (fifengine): New variable.

4 years agognu: Add fifechan.
Christopher Baines [Thu, 8 Aug 2019 20:23:50 +0000 (21:23 +0100)]
gnu: Add fifechan.

* gnu/packages/games.scm (fifechan): New variable.

4 years agognu: linux-libre@4.14: Update to 4.14.147.
Tobias Geerinckx-Rice [Tue, 8 Oct 2019 03:22:32 +0000 (05:22 +0200)]
gnu: linux-libre@4.14: Update to 4.14.147.

* gnu/packages/linux.scm (deblob-scripts-4.14)
(linux-libre-4.14-version, linux-libre-4.14-pristine-source):
Update to 4.14.147.

4 years agognu: linux-libre@4.9: Update to 4.9.195.
Tobias Geerinckx-Rice [Tue, 8 Oct 2019 03:14:59 +0000 (05:14 +0200)]
gnu: linux-libre@4.9: Update to 4.9.195.

* gnu/packages/linux.scm (deblob-scripts-4.9)
(linux-libre-4.9-version, linux-libre-4.9-pristine-source):
Update to 4.9.195.

4 years agognu: linux-libre@4.19: Update to 4.19.77.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 23:24:08 +0000 (01:24 +0200)]
gnu: linux-libre@4.19: Update to 4.19.77.

* gnu/packages/linux.scm (deblob-scripts-4.19)
(linux-libre-4.19-version, linux-libre-4.19-pristine-source):
Update to 4.19.77.

4 years agognu: linux-libre@5.2: Update to 5.2.19.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 23:23:02 +0000 (01:23 +0200)]
gnu: linux-libre@5.2: Update to 5.2.19.

* gnu/packages/linux.scm (deblob-scripts-5.2)
(linux-libre-5.2-version, linux-libre-5.2-pristine-source):
Update to 5.2.19.

4 years agognu: coin3D: Use a specific changeset.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 21:13:51 +0000 (23:13 +0200)]
gnu: coin3D: Use a specific changeset.

* gnu/packages/graphics.scm (coin3D)[source]: Use HG-FETCH and…
GIT-FILE-NAME.

4 years agognu: me-cleaner: Update to 1.2.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 13:32:20 +0000 (15:32 +0200)]
gnu: me-cleaner: Update to 1.2.

* gnu/packages/flashing-tools.scm (me-cleaner): Update to 1.2.
[arguments]: Remove ‘create-setup.py’ phase.  Add ‘install-documentation’ phase.

4 years agognu: perl-async-interrupt: Update to 1.25.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 08:50:23 +0000 (10:50 +0200)]
gnu: perl-async-interrupt: Update to 1.25.

* gnu/packages/perl.scm (perl-async-interrupt): Update to 1.25.

4 years agognu: maxflow: Use HTTPS home page.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 08:48:41 +0000 (10:48 +0200)]
gnu: maxflow: Use HTTPS home page.

* gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.

4 years agognu: licensecheck: Update to 3.0.37.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 08:32:49 +0000 (10:32 +0200)]
gnu: licensecheck: Update to 3.0.37.

* gnu/packages/license.scm (licensecheck): Update to 3.0.37.

4 years agognu: perl-regexp-pattern-license: Update to 3.1.94.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 08:32:18 +0000 (10:32 +0200)]
gnu: perl-regexp-pattern-license: Update to 3.1.94.

* gnu/packages/license.scm (perl-regexp-pattern-license): Update to 3.1.94.

4 years agognu: qucs-s: Update to 0.0.21.
Tobias Geerinckx-Rice [Mon, 7 Oct 2019 08:30:08 +0000 (10:30 +0200)]
gnu: qucs-s: Update to 0.0.21.

* gnu/packages/engineering.scm (qucs-s): Update to 0.0.21.

4 years agognu: maxflow: Correct version to 3.0.5.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 22:02:46 +0000 (00:02 +0200)]
gnu: maxflow: Correct version to 3.0.5.

This won't be picked up by ‘guix package -u’, but the code is identical
anyway.  By changing this now, fewer installations will fail to upgrade
at all if upstream ever release a new <3.4.

* gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5.
[source]: Use version tag instead of raw matching commit.

4 years agognu: maxflow: Use GIT-FILE-NAME.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 21:59:02 +0000 (23:59 +0200)]
gnu: maxflow: Use GIT-FILE-NAME.

* gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.

4 years agognu: lynis: Update to 2.7.5.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 09:53:18 +0000 (11:53 +0200)]
gnu: lynis: Update to 2.7.5.

* gnu/packages/admin.scm (lynis): Update to 2.7.5.

4 years agognu: ncmpc: Fix manual install.
Eric Bavier [Tue, 8 Oct 2019 00:48:31 +0000 (19:48 -0500)]
gnu: ncmpc: Fix manual install.

The default manual installation directory was fixed upstream in version 0.34.

* gnu/packages/mpd.scm (ncmpc)[arguments]: Remove #:configure-flags.

4 years agognu: emacs-linum-relative: Update to 0.6.
Arun Isaac [Mon, 7 Oct 2019 15:49:41 +0000 (21:19 +0530)]
gnu: emacs-linum-relative: Update to 0.6.

* gnu/packages/emacs-xyz.scm (emacs-linum-relative): Update to 0.6.

4 years agoMerge branch 'master' into core-updates
Ludovic Courtès [Mon, 7 Oct 2019 15:06:13 +0000 (17:06 +0200)]
Merge branch 'master' into core-updates

4 years agognu: jack-2: Update to 1.9.13.
Ricardo Wurmus [Mon, 7 Oct 2019 14:32:03 +0000 (16:32 +0200)]
gnu: jack-2: Update to 1.9.13.

* gnu/packages/audio.scm (jack-2): Update to 1.9.13.
[arguments]: Don't build with python-2.
[inputs]: Replace python2-dbus with python-dbus.

4 years agognu: Add trivial-macroexpand-all.
Pierre Neidhardt [Mon, 7 Oct 2019 11:50:07 +0000 (13:50 +0200)]
gnu: Add trivial-macroexpand-all.

* gnu/packages/lisp.scm (cl-trivial-macroexpand-all,
  ecl-trivial-macroexpand-all, sbcl-trivial-macroexpand-all): New variables.

4 years agognu: Add trivial-file-size.
Pierre Neidhardt [Mon, 7 Oct 2019 11:49:42 +0000 (13:49 +0200)]
gnu: Add trivial-file-size.

* gnu/packages/lisp.scm (cl-trivial-file-size, ecl-trivial-file-size,
  sbcl-trivial-file-size): New variables.

4 years agognu: Add global-vars.
Pierre Neidhardt [Mon, 7 Oct 2019 11:48:52 +0000 (13:48 +0200)]
gnu: Add global-vars.

* gnu/packages/lisp.scm (cl-global-vars, ecl-global-vars, sbcl-global-vars):
  New variables.

4 years agognu: Add string-case.
Pierre Neidhardt [Mon, 7 Oct 2019 11:48:23 +0000 (13:48 +0200)]
gnu: Add string-case.

* gnu/packages/lisp.scm (cl-string-case, ecl-string-case, sbcl-string-case):
  New variables.

4 years agognu: Add cl-fare-quasiquote-extras.
Pierre Neidhardt [Mon, 7 Oct 2019 11:48:00 +0000 (13:48 +0200)]
gnu: Add cl-fare-quasiquote-extras.

* gnu/packages/lisp.scm (cl-fare-quasiquote-extras): New variable.

4 years agognu: Add cl-fare-quasiquote-readtable.
Pierre Neidhardt [Mon, 7 Oct 2019 11:47:46 +0000 (13:47 +0200)]
gnu: Add cl-fare-quasiquote-readtable.

* gnu/packages/lisp.scm (cl-fare-quasiquote-readtable): New variable.

4 years agognu: Add fare-quasiquote-optima.
Pierre Neidhardt [Mon, 7 Oct 2019 11:46:55 +0000 (13:46 +0200)]
gnu: Add fare-quasiquote-optima.

* gnu/packages/lisp.scm (cl-fare-quasiquote-optima,
  sbcl-fare-quasiquote-optima): New variables.

4 years agognu: Add cl-fare-quasiquote.
Pierre Neidhardt [Mon, 7 Oct 2019 11:46:36 +0000 (13:46 +0200)]
gnu: Add cl-fare-quasiquote.

* gnu/packages/lisp.scm (cl-fare-quasiquote): New variable.

4 years agognu: sbcl-optima: Fix version number
Pierre Neidhardt [Mon, 7 Oct 2019 11:45:53 +0000 (13:45 +0200)]
gnu: sbcl-optima: Fix version number

* gnu/packages/lisp.scm (sbcl-optima)[version]: It's actually 1.0.

4 years agognu: linux-libre: Update to 5.3.4.
Vagrant Cascadian [Sun, 6 Oct 2019 06:07:15 +0000 (06:07 +0000)]
gnu: linux-libre: Update to 5.3.4.

* gnu/packages/linux (linux-libre-5.3-version): Update to 5.3.4.
  (deblob-scripts-5.3): Update to 5.3.4.

4 years agognu: icedtea-7: Avoid massive rebuild.
Ludovic Courtès [Mon, 7 Oct 2019 08:38:22 +0000 (10:38 +0200)]
gnu: icedtea-7: Avoid massive rebuild.

Reported by Efraim Flashner.

* gnu/packages/java.scm (icedtea-7)[arguments]: Change 'lib-path'
definition in 'install-libjvm' to avoid the rebuilds that commit
1b6f99ea538d767099596860017e67755c1ac42f would otherwise entail.

4 years agognu: aria2: Update to 1.35.0.
Efraim Flashner [Mon, 7 Oct 2019 08:18:45 +0000 (11:18 +0300)]
gnu: aria2: Update to 1.35.0.

* gnu/packages/bittorrent.scm (aria2): Update to 1.35.0.
[source]: Use new upstream uri. Remove patch.
* gnu/packages/patches/aria2-CVE-2019-3500.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

4 years agognu: icedtea-7: Support non-Intel systems.
Ludovic Courtès [Mon, 7 Oct 2019 07:50:51 +0000 (09:50 +0200)]
gnu: icedtea-7: Support non-Intel systems.

This is a followup to 1b6f99ea538d767099596860017e67755c1ac42f.

* gnu/packages/java.scm (icedtea-7)[arguments]: In 'install-libjvm'
phase, match armhf and aarch64.
[supported-systems]: New field.

4 years agognu: emacs-mbsync: Update to 0.1.2-4.b62491c.
Oleg Pykhalov [Mon, 7 Oct 2019 07:21:19 +0000 (10:21 +0300)]
gnu: emacs-mbsync: Update to 0.1.2-4.b62491c.

* gnu/packages/emacs-xyz.scm (emacs-mbsync): Update to 0.1.2-4.b62491c.

4 years agognu: emacs-evil-nerd-commenter: Update to 3.3.8.
Brian Leung [Mon, 7 Oct 2019 06:20:50 +0000 (08:20 +0200)]
gnu: emacs-evil-nerd-commenter: Update to 3.3.8.

* gnu/packages/emacs-xyz.scm (emacs-evil-nerd-commenter): Update to 3.3.8.

4 years agognu: emacs-evil-traces: Update to 0.0.1-2.1931e3e.
Brian Leung [Mon, 7 Oct 2019 03:15:55 +0000 (05:15 +0200)]
gnu: emacs-evil-traces: Update to 0.0.1-2.1931e3e.

* gnu/packages/emacs-xyz.scm (emacs-evil-traces): Update to 0.0.1-2.1931e3e.

4 years agognu: Add emacs-peg.
Brian Leung [Sun, 6 Oct 2019 05:31:25 +0000 (07:31 +0200)]
gnu: Add emacs-peg.

* gnu/packages/emacs-xyz.scm (emacs-peg): New variable.

4 years agognu: emacs-deadgrep: Update to 0.8-2.3fc7ca1.
Brian Leung [Sun, 6 Oct 2019 23:43:37 +0000 (01:43 +0200)]
gnu: emacs-deadgrep: Update to 0.8-2.3fc7ca1.

* gnu/packages/emacs-xyz.scm (emacs-deadgrep): Update to 0.8-2.3fc7ca1.

4 years agognu: r-variancepartition: Update to 1.14.1.
Ricardo Wurmus [Sun, 6 Oct 2019 21:07:16 +0000 (23:07 +0200)]
gnu: r-variancepartition: Update to 1.14.1.

* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.14.1.
[propagated-inputs]: Add r-biocparallel.

4 years agognu: r-mixomics: Update to 6.8.5.
Ricardo Wurmus [Sun, 6 Oct 2019 21:07:09 +0000 (23:07 +0200)]
gnu: r-mixomics: Update to 6.8.5.

* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.8.5.

4 years agognu: r-regioner: Update to 1.16.5.
Ricardo Wurmus [Sun, 6 Oct 2019 21:07:04 +0000 (23:07 +0200)]
gnu: r-regioner: Update to 1.16.5.

* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.5.

4 years agognu: r-backports: Update to 1.1.5.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:59 +0000 (23:06 +0200)]
gnu: r-backports: Update to 1.1.5.

* gnu/packages/statistics.scm (r-backports): Update to 1.1.5.

4 years agognu: r-gargle: Update to 0.4.0.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:54 +0000 (23:06 +0200)]
gnu: r-gargle: Update to 0.4.0.

* gnu/packages/cran.scm (r-gargle): Update to 0.4.0.

4 years agognu: r-rcppparallel: Update to 4.4.4.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:49 +0000 (23:06 +0200)]
gnu: r-rcppparallel: Update to 4.4.4.

* gnu/packages/cran.scm (r-rcppparallel): Update to 4.4.4.

4 years agognu: r-hdf5r: Update to 1.3.0.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:42 +0000 (23:06 +0200)]
gnu: r-hdf5r: Update to 1.3.0.

* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.0.

4 years agognu: r-promises: Update to 1.1.0.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:37 +0000 (23:06 +0200)]
gnu: r-promises: Update to 1.1.0.

* gnu/packages/cran.scm (r-promises): Update to 1.1.0.

4 years agognu: r-later: Update to 1.0.0.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:31 +0000 (23:06 +0200)]
gnu: r-later: Update to 1.0.0.

* gnu/packages/cran.scm (r-later): Update to 1.0.0.

4 years agognu: r-maptools: Update to 0.9-8.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:26 +0000 (23:06 +0200)]
gnu: r-maptools: Update to 0.9-8.

* gnu/packages/cran.scm (r-maptools): Update to 0.9-8.

4 years agognu: r-htmlwidgets: Update to 1.5.
Ricardo Wurmus [Sun, 6 Oct 2019 21:06:20 +0000 (23:06 +0200)]
gnu: r-htmlwidgets: Update to 1.5.

* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.5.

4 years agognu: r-htmltools: Update to 0.4.0.
Ricardo Wurmus [Sun, 6 Oct 2019 21:04:11 +0000 (23:04 +0200)]
gnu: r-htmltools: Update to 0.4.0.

* gnu/packages/cran.scm (r-htmltools): Update to 0.4.0.
[arguments]: Remove field.
[propagated-inputs]: Add r-rlang.

4 years agognu: r-seurat: Update to 3.1.1.
Ricardo Wurmus [Sun, 6 Oct 2019 21:03:49 +0000 (23:03 +0200)]
gnu: r-seurat: Update to 3.1.1.

* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.1.
[propagated-inputs]: Add r-httr.

4 years agognu: r-rsamtools: Update to 2.0.2.
Ricardo Wurmus [Sun, 6 Oct 2019 21:03:39 +0000 (23:03 +0200)]
gnu: r-rsamtools: Update to 2.0.2.

* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.2.

4 years agognu: r-biomart: Update to 2.40.5.
Ricardo Wurmus [Sun, 6 Oct 2019 21:03:27 +0000 (23:03 +0200)]
gnu: r-biomart: Update to 2.40.5.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.5.

4 years agognu: emacs-helm-ag: Fix version.
Brian Leung [Sun, 6 Oct 2019 20:02:56 +0000 (22:02 +0200)]
gnu: emacs-helm-ag: Fix version.

* gnu/packages/emacs-xyz.scm (emacs-helm-ag): Fix version.

4 years agognu: Add emacs-helm-org.
Brian Leung [Sun, 6 Oct 2019 20:02:46 +0000 (22:02 +0200)]
gnu: Add emacs-helm-org.

* gnu/packages/emacs-xyz.scm (emacs-helm-org): New variable.

4 years agognu: emacs-helm: Update to 3.5.0.
Brian Leung [Sun, 6 Oct 2019 20:02:25 +0000 (22:02 +0200)]
gnu: emacs-helm: Update to 3.5.0.

* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.5.0.

4 years agognu: nss-pam-ldapd: Update to 0.9.11.
Ricardo Wurmus [Sun, 6 Oct 2019 20:07:03 +0000 (22:07 +0200)]
gnu: nss-pam-ldapd: Update to 0.9.11.

* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.11.
[inputs]: Replace python-2 with python.

4 years agoMerge branch 'master' into core-updates
Ricardo Wurmus [Sun, 6 Oct 2019 20:02:20 +0000 (22:02 +0200)]
Merge branch 'master' into core-updates

4 years agognu: Add mloop.
Ricardo Wurmus [Sun, 6 Oct 2019 19:59:30 +0000 (21:59 +0200)]
gnu: Add mloop.

* gnu/packages/music.scm (mloop): New variable.

4 years agognu: guile-studio: Update to 0-2.4d63f3d.
Ricardo Wurmus [Sun, 6 Oct 2019 19:59:01 +0000 (21:59 +0200)]
gnu: guile-studio: Update to 0-2.4d63f3d.

* gnu/packages/guile-xyz.scm (guile-studio): Update to 0-2.4d63f3d.

4 years agognu: icedtea-7: Fix build on i686-linux.
Ricardo Wurmus [Fri, 4 Oct 2019 08:36:29 +0000 (10:36 +0200)]
gnu: icedtea-7: Fix build on i686-linux.

* gnu/packages/java.scm (icedtea-7)[arguments]: Use "i386" lib directory when
the system is "i686-linux".

4 years agognu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM.
Ricardo Wurmus [Fri, 4 Oct 2019 08:35:22 +0000 (10:35 +0200)]
gnu: jamvm-1-bootstrap: Fix segfault in bootstrap JVM.

* gnu/packages/java.scm (jamvm-1-bootstrap)[arguments]: Add configure flags:
--disable-int-caching, --enable-runtime-reloc-checks, and --enable-ffi.
[inputs]: Add libffi.

4 years agognu: emacs-hackernews: Update to 0.5.0-2.2362d7b.
Brian Leung [Sun, 6 Oct 2019 18:39:31 +0000 (20:39 +0200)]
gnu: emacs-hackernews: Update to 0.5.0-2.2362d7b.

* gnu/packages/emacs-xyz.scm (emacs-hackernews): Update to 0.5.0-2.2362d7b.

4 years agognu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee.
Brian Leung [Sun, 6 Oct 2019 18:17:59 +0000 (20:17 +0200)]
gnu: emacs-undo-propose-el: Update to 3.0.0-3.f80baee.

* gnu/packages/emacs-xyz.scm (emacs-undo-propose-el): Update to 3.0.0-3.f80baee.

4 years agognu: emacs-evil-mc: Update to 0.0.3-2.1cabb86.
Brian Leung [Sun, 6 Oct 2019 17:57:09 +0000 (19:57 +0200)]
gnu: emacs-evil-mc: Update to 0.0.3-2.1cabb86.

* gnu/packages/emacs-xyz.scm (emacs-evil-mc): Update to 0.0.3-2.1cabb86.

4 years agognu: Add cl-goject-introspection.
Pierre Neidhardt [Sun, 6 Oct 2019 17:34:13 +0000 (19:34 +0200)]
gnu: Add cl-goject-introspection.

* gnu/packages/lisp.scm (cl-goject-introspection,
  sbcl-cl-gobject-introspection): New variables.

4 years agognu: WebKitGTK: Embed absolute file name of libWPEBackend-fdo-1.0.so.
Marius Bakke [Sun, 6 Oct 2019 12:24:04 +0000 (14:24 +0200)]
gnu: WebKitGTK: Embed absolute file name of libWPEBackend-fdo-1.0.so.

Fixes <https://bugs.gnu.org/37545>.
Reported by Vagrant Cascadian <vagrant@debian.org>.

* gnu/packages/webkit.scm (webkitgtk)[arguments]: Add phase.

4 years agognu: linux-libre: Remove glibc from CPATH before the build.
Marius Bakke [Fri, 4 Oct 2019 19:36:42 +0000 (21:36 +0200)]
gnu: linux-libre: Remove glibc from CPATH before the build.

Fixes <https://bugs.gnu.org/37593>.

* gnu/packages/linux.scm (make-linux-libre*)[arguments]: Drop "libc" from CPATH.

4 years agognu: linux-libre: Try to aggressively gather entropy during boot.
Marius Bakke [Thu, 3 Oct 2019 20:22:08 +0000 (22:22 +0200)]
gnu: linux-libre: Try to aggressively gather entropy during boot.

Fixes <https://bugs.gnu.org/37501>.

* gnu/packages/patches/linux-libre-active-entropy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre-5.2-source): Use it.

4 years agognu: perf: Treat kernel headers as system headers.
Marius Bakke [Mon, 23 Sep 2019 14:13:43 +0000 (16:13 +0200)]
gnu: perf: Treat kernel headers as system headers.

* gnu/packages/linux.scm (perf)[arguments]: Instead of disabling -Werror,
set C_INCLUDE_PATH.

4 years agoservices: shepherd: Compile service files.
Ludovic Courtès [Sun, 6 Oct 2019 10:51:33 +0000 (12:51 +0200)]
services: shepherd: Compile service files.

This reduces resident memory for PID 1 from 29.8MiB to 28.7MiB right
after boot on a bare-bones system (x86_64-linux).

* gnu/services/shepherd.scm (scm->go): New procedure.
(shepherd-configuration-file)[config]: Call it and use 'load-compiled'
instead of 'primitive-load'.

4 years agoservices: udev: Explicitly depend on (gnu build linux-boot).
Ludovic Courtès [Sun, 6 Oct 2019 10:42:41 +0000 (12:42 +0200)]
services: udev: Explicitly depend on (gnu build linux-boot).

* gnu/services/base.scm (udev-shepherd-service): Wrap 'start' method in
'with-imported-modules'.

4 years agoservices: agetty: Explicitly depend on (gnu build linux-boot).
Ludovic Courtès [Sun, 6 Oct 2019 10:01:24 +0000 (12:01 +0200)]
services: agetty: Explicitly depend on (gnu build linux-boot).

* gnu/services/base.scm (default-serial-port): Wrap in
'with-imported-modules'.

4 years agosystem: Add 'mount' and 'umount' to '%setuid-programs'.
Ludovic Courtès [Sun, 6 Oct 2019 09:44:06 +0000 (11:44 +0200)]
system: Add 'mount' and 'umount' to '%setuid-programs'.

Fixes <https://bugs.gnu.org/37569>.
Reported by Diego Nicola Barbato <dnbarbato@posteo.de>.

* gnu/system.scm (%setuid-programs): Add "mount" and "umount" from
util-linux.

4 years agognu: Add cl-random-forest.
Guillaume Le Vaillant [Thu, 3 Oct 2019 12:11:31 +0000 (14:11 +0200)]
gnu: Add cl-random-forest.

* gnu/packages/machine-learning.scm (sbcl-cl-random-forest, cl-random-forest,
  ecl-cl-random-forest): New variables.

4 years agognu: Add cl-online-learning.
Guillaume Le Vaillant [Thu, 3 Oct 2019 12:11:30 +0000 (14:11 +0200)]
gnu: Add cl-online-learning.

* gnu/packages/machine-learning.scm (sbcl-cl-online-learning,
  cl-online-learning, ecl-cl-online-learning): New variables.

4 years agognu: Add cl-libsvm-format.
Guillaume Le Vaillant [Thu, 3 Oct 2019 12:11:29 +0000 (14:11 +0200)]
gnu: Add cl-libsvm-format.

* gnu/packages/machine-learning.scm (sbcl-cl-libsvm-format, cl-libsvm-format,
  ecl-cl-libsvm-format): New variables.

4 years agognu: Add cl-store.
Guillaume Le Vaillant [Thu, 3 Oct 2019 12:11:28 +0000 (14:11 +0200)]
gnu: Add cl-store.

* gnu/packages/lisp.scm (sbcl-cl-store, cl-store, ecl-cl-store): New
  variables.

4 years agognu: sbcl-hu.dwim.asdf: Update to 20190521.
Guillaume Le Vaillant [Thu, 3 Oct 2019 09:01:13 +0000 (11:01 +0200)]
gnu: sbcl-hu.dwim.asdf: Update to 20190521.

* gnu/packages/lisp.scm (sbcl-hu.dwim.asdf): Update to 20190521.
  [uri]: Fetch more recent version from Quicklisp.

4 years agognu: sbcl-alexandria: Update to 1.0.0.
Guillaume Le Vaillant [Thu, 3 Oct 2019 09:01:12 +0000 (11:01 +0200)]
gnu: sbcl-alexandria: Update to 1.0.0.

* gnu/packages/lisp.scm (sbcl-alexandria): Update to 1.0.0.
  [native-inputs]: Add rt.

4 years agognu: ecl: Do not compile the deprecated MIT-RT.
Guillaume Le Vaillant [Thu, 3 Oct 2019 09:01:11 +0000 (11:01 +0200)]
gnu: ecl: Do not compile the deprecated MIT-RT.

Compiling the rt bundled with ECL prevents the ecl-rt package from compiling
properly, as ECL thinks it has already been compiled.

* gnu/packages/lisp.scm (ecl)[arguments]: Add '--without-rt' to
  'configure-flags'.

4 years agognu: Add chanl.
Guillaume Le Vaillant [Tue, 1 Oct 2019 08:55:24 +0000 (10:55 +0200)]
gnu: Add chanl.

* gnu/packages/lisp.scm (sbcl-chanl, cl-chanl, ecl-chanl): New variables.

4 years agognu: Remove rust-clippy.
Efraim Flashner [Sun, 6 Oct 2019 11:38:02 +0000 (14:38 +0300)]
gnu: Remove rust-clippy.

This was added by accident in 14f3a7e37314451b9b93d7b7536f3ae3dec1ed68.

* gnu/packages/crates-io.scm (rust-clippy): Remove variable.

4 years agognu: endless-sky: Update to 0.9.10.
Timotej Lazar [Sat, 5 Oct 2019 16:46:12 +0000 (18:46 +0200)]
gnu: endless-sky: Update to 0.9.10.

* gnu/packages/games.scm (endless-sky): Update to 0.9.10.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: zabbix: Update to 4.2.7.
Giovanni Biscuolo [Fri, 4 Oct 2019 16:15:28 +0000 (18:15 +0200)]
gnu: zabbix: Update to 4.2.7.

* gnu/packages/monitoring.scm: (zabbix) Update to 4.2.7.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: Update python-pastel to 0.1.1.
tlecarrour@easter-eggs.com [Fri, 4 Oct 2019 07:48:40 +0000 (09:48 +0200)]
gnu: Update python-pastel to 0.1.1.

* gnu/packages/graphics.scm (python-pastel): Update to 0.1.1.
[arguments]: Add custom 'check phase.
[description]: Simplify description.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
4 years agognu: waybar: Update to 0.8.0.
Efraim Flashner [Sun, 6 Oct 2019 08:05:27 +0000 (11:05 +0300)]
gnu: waybar: Update to 0.8.0.

* gnu/packages/wm.scm (waybar): Update to 0.8.0.

4 years agognu: r-data-table: Update to 1.12.4.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 02:46:22 +0000 (04:46 +0200)]
gnu: r-data-table: Update to 1.12.4.

* gnu/packages/statistics.scm (r-data-table): Update to 1.12.4.
[inputs]: Add zlib.

4 years agognu: python-mnemonic: Update to 0.19.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 02:13:49 +0000 (04:13 +0200)]
gnu: python-mnemonic: Update to 0.19.

* gnu/packages/finance.scm (python-mnemonic): Update to 0.19.

4 years agognu: r-gamlss-dist: Update to 5.1-5.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:56:59 +0000 (02:56 +0200)]
gnu: r-gamlss-dist: Update to 5.1-5.

* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-5.

4 years agognu: python-traitlets: Update to 4.3.3.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:47:52 +0000 (02:47 +0200)]
gnu: python-traitlets: Update to 4.3.3.

* gnu/packages/python-xyz.scm (python-traitlets): Update to 4.3.3.

4 years agognu: r-pegas: Update to 0.12.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:26:37 +0000 (02:26 +0200)]
gnu: r-pegas: Update to 0.12.

* gnu/packages/cran.scm (r-pegas): Update to 0.12.

4 years agognu: rust-miniz-oxide: Update to 0.3.3.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:21:16 +0000 (02:21 +0200)]
gnu: rust-miniz-oxide: Update to 0.3.3.

* gnu/packages/crates-io.scm (rust-miniz-oxide): Update to 0.3.3.

4 years agognu: rust-openssl-sys: Update to 0.9.50.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:18:29 +0000 (02:18 +0200)]
gnu: rust-openssl-sys: Update to 0.9.50.

* gnu/packages/crates-io.scm (rust-openssl-sys): Update to 0.9.50.

4 years agognu: r-polspline: Update to 1.1.16.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:17:32 +0000 (02:17 +0200)]
gnu: r-polspline: Update to 1.1.16.

* gnu/packages/cran.scm (r-polspline): Update to 1.1.16.

4 years agognu: perl-test-tcp: Update to 2.21.
Tobias Geerinckx-Rice [Sun, 6 Oct 2019 00:03:16 +0000 (02:03 +0200)]
gnu: perl-test-tcp: Update to 2.21.

* gnu/packages/web.scm (perl-test-tcp): Update to 2.21.