jackhill/guix/guix.git
9 years agoAdd Andy to 'AUTHORS'.
Ludovic Courtès [Sun, 5 Apr 2015 20:48:41 +0000 (22:48 +0200)]
Add Andy to 'AUTHORS'.

9 years agosystem: Take kernel modules from the user-specified kernel.
Andy Wingo [Sun, 5 Apr 2015 20:47:16 +0000 (22:47 +0200)]
system: Take kernel modules from the user-specified kernel.

* gnu/system/linux-initrd.scm (base-initrd): Add #:linux option to
  specify the linux kernel to use.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Propagate
  #:linux to base-initrd.
* gnu/system.scm (operating-system-initrd-file): Pass #:linux to
  'make-initrd'.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
9 years agognu: nginx: Clean up installation directories.
David Thompson [Sun, 5 Apr 2015 16:34:45 +0000 (12:34 -0400)]
gnu: nginx: Clean up installation directories.

* gnu/packages/web.scm (nginx): Add 'fix-root-dirs' phase.

9 years agognu: nginx: Use modify-phases syntax.
David Thompson [Sun, 5 Apr 2015 16:31:54 +0000 (12:31 -0400)]
gnu: nginx: Use modify-phases syntax.

* gnu/packages/web.scm (nginx): Use modify-phases syntax.

9 years agognu: Add livestreamer.
David Thompson [Sat, 4 Apr 2015 17:18:40 +0000 (13:18 -0400)]
gnu: Add livestreamer.

* gnu/packages/video.scm (livestreamer): New variable.

9 years agognu: Add python-singledispatch.
David Thompson [Sat, 4 Apr 2015 17:17:35 +0000 (13:17 -0400)]
gnu: Add python-singledispatch.

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch): New
  variables.

9 years agognu: python-requests: Fix Python 2 version and add support for Python 3.
David Thompson [Sat, 4 Apr 2015 17:15:40 +0000 (13:15 -0400)]
gnu: python-requests: Fix Python 2 version and add support for Python 3.

* gnu/packages/python.scm (python-requests): New variable.
  (python2-requests): Generate based on Python 3 variant.

9 years agognu: gnome-mines: Update to 3.16.0.
宋文武 [Sun, 5 Apr 2015 15:55:09 +0000 (23:55 +0800)]
gnu: gnome-mines: Update to 3.16.0.

* gnu/packages/gnome.scm (gnome-mines): Update to 3.16.0.

9 years agognu: gsettings-desktop-schemas: Enable GObject introspection.
宋文武 [Sun, 5 Apr 2015 14:53:02 +0000 (22:53 +0800)]
gnu: gsettings-desktop-schemas: Enable GObject introspection.

* gnu/packages/gnome.scm (gsettings-desktop-schemas)[native-inputs]:
  Add gobject-introspection.

9 years agognu: gsettings-desktop-schemas: Update to 3.16.0.
宋文武 [Sun, 5 Apr 2015 14:48:32 +0000 (22:48 +0800)]
gnu: gsettings-desktop-schemas: Update to 3.16.0.

* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 3.16.0.

9 years agognu: Add aalib.
宋文武 [Sat, 4 Apr 2015 15:08:52 +0000 (23:08 +0800)]
gnu: Add aalib.

* gnu/packages/video.scm (aalib): New variable.

9 years agognu: Add WavPack.
宋文武 [Sun, 5 Apr 2015 02:36:05 +0000 (10:36 +0800)]
gnu: Add WavPack.

* gnu/packages/audio.scm (wavpack): New variable.

9 years agognu: Add libshout.
宋文武 [Sat, 4 Apr 2015 08:38:10 +0000 (16:38 +0800)]
gnu: Add libshout.

* gnu/packages/xiph.scm (libshout): New varibale.

9 years agognu: Add libavc1394.
宋文武 [Sat, 4 Apr 2015 08:19:18 +0000 (16:19 +0800)]
gnu: Add libavc1394.

* gnu/packages/linux.scm (libavc1394): New variable.

9 years agognu: Add libraw1394.
宋文武 [Sat, 4 Apr 2015 08:00:05 +0000 (16:00 +0800)]
gnu: Add libraw1394.

* gnu/packages/linux.scm (libraw1394): New variable.

9 years agognu: Add icecast.
David Thompson [Sat, 28 Feb 2015 02:15:12 +0000 (21:15 -0500)]
gnu: Add icecast.

* gnu/packages/xiph.scm (icecast): New variable.

9 years agoscripts: Add 'publish' command.
David Thompson [Tue, 17 Mar 2015 14:21:31 +0000 (10:21 -0400)]
scripts: Add 'publish' command.

* guix/scripts/publish.scm: New file.
* po/guix/POTFILES.in: Add it.
* tests/publish.scm: New file.
* Makefile.am (MODULES): Add script module.
  (SCM_TESTS): Add test module.
* doc/guix.texi ("Invoking guix publish"): New node.

9 years agostore: Add query-path-info operation.
David Thompson [Tue, 17 Mar 2015 14:19:36 +0000 (10:19 -0400)]
store: Add query-path-info operation.

* guix/store.scm (<path-info>): New record type.
  (read-path-info): New procedure.
  (read-arg): Add 'path-info' syntax.
  (query-path-info): New variable.
* tests/store.scm ("query-path-info"): New test.

9 years agognu: node: Update to 0.12.2.
David Thompson [Sat, 4 Apr 2015 17:47:28 +0000 (13:47 -0400)]
gnu: node: Update to 0.12.2.

9 years agognu: Add gnome-terminal.
Andy Wingo [Sat, 4 Apr 2015 17:14:38 +0000 (13:14 -0400)]
gnu: Add gnome-terminal.

* gnu/packages/gnome.scm (gnome-terminal): New variable.

9 years agognu: Perl GD: Add stub patch.
Mark H Weaver [Sat, 4 Apr 2015 15:15:30 +0000 (11:15 -0400)]
gnu: Perl GD: Add stub patch.

This is a temporary fix to enable hydra to complete evaluations, which were
broken by f7ee7a9b06a386863d7752ba028a79bb98d3504d due to a missing patch
file.  The real patch will be put into place in a later commit.

* gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch:
  New file.  This is just a stub.
* gnu-system.am (dist_patch_DATA): Add it.

9 years agognu: source-highlight: Remove obsolete patch.
Mark H Weaver [Sat, 4 Apr 2015 15:00:21 +0000 (11:00 -0400)]
gnu: source-highlight: Remove obsolete patch.

This should have been done in a952b10c23c9ca5931793d862a718b55492a046d.

* gnu/packages/patches/source-highlight-regexrange-test.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/pretty-print.scm (source-highlight)[source]: Remove patch.

9 years agognu: source-highlight: Update to 3.1.8.
Mark H Weaver [Sat, 4 Apr 2015 07:34:28 +0000 (03:34 -0400)]
gnu: source-highlight: Update to 3.1.8.

* gnu/packages/pretty-print.scm (source-highlight): Update to 3.1.8.

9 years agobuild-system: Add haskell-build-system.
Federico Beffa [Fri, 27 Mar 2015 08:36:56 +0000 (09:36 +0100)]
build-system: Add haskell-build-system.

* guix/build-system/haskell.scm: New file.
* guix/build/haskell-build-system.scm: New file.
* doc/guix.texi: Add section on 'haskell-build-system'.

9 years agognu: ghc: Fix i686 build.
Federico Beffa [Sat, 28 Mar 2015 19:09:37 +0000 (20:09 +0100)]
gnu: ghc: Fix i686 build.

* gnu/packages/haskell.scm (ghc-bootstrap-7.8.4): Replace with ...
  (ghc-bootstrap-i686-7.8.4, ghc-bootstrap-x86_64-7.8.4): ... these.
  (ghc)[native-inputs]: Select the appropriate bootstrap.

9 years agognu: Add Catalyst-View-JSON.
Eric Bavier [Fri, 3 Apr 2015 19:49:48 +0000 (14:49 -0500)]
gnu: Add Catalyst-View-JSON.

* gnu/packages/web.scm (perl-catalyst-view-json): New variable.

9 years agognu: Add Perl YAML.
Eric Bavier [Fri, 3 Apr 2015 19:49:06 +0000 (14:49 -0500)]
gnu: Add Perl YAML.

* gnu/packages/perl.scm (perl-yaml): New variable.

9 years agognu: Add Test-YAML.
Eric Bavier [Fri, 3 Apr 2015 19:48:41 +0000 (14:48 -0500)]
gnu: Add Test-YAML.

* gnu/packages/perl.scm (perl-test-yaml): New variable.

9 years agognu: Add Test-Base.
Eric Bavier [Fri, 3 Apr 2015 19:48:04 +0000 (14:48 -0500)]
gnu: Add Test-Base.

* gnu/packages/perl.scm (perl-test-base): New variable.

9 years agognu: Add Spiffy.
Eric Bavier [Fri, 3 Apr 2015 19:47:37 +0000 (14:47 -0500)]
gnu: Add Spiffy.

* gnu/packages/perl.scm (perl-spiffy): New variable.

9 years agognu: Add Catalyst-View-Download.
Eric Bavier [Fri, 3 Apr 2015 19:20:10 +0000 (14:20 -0500)]
gnu: Add Catalyst-View-Download.

* gnu/packages/web.scm (perl-catalyst-view-download): New variable.

9 years agognu: Add Test-WWW-Mechanize-Catalyst.
Eric Bavier [Fri, 3 Apr 2015 19:19:05 +0000 (14:19 -0500)]
gnu: Add Test-WWW-Mechanize-Catalyst.

* gnu/packages/web.scm (perl-test-www-mechanize-catalyst): New
  variable.

9 years agognu: Add Text-CSV.
Eric Bavier [Fri, 3 Apr 2015 19:14:39 +0000 (14:14 -0500)]
gnu: Add Text-CSV.

* gnu/packages/perl.scm (perl-text-csv): New variable.

9 years agognu: Add Test-utf8.
Eric Bavier [Fri, 3 Apr 2015 18:31:19 +0000 (13:31 -0500)]
gnu: Add Test-utf8.

* gnu/packages/perl.scm (perl-test-utf8): New variable.

9 years agognu: Add Catalyst-TraitFor-Request-ProxyBase.
Eric Bavier [Fri, 3 Apr 2015 16:59:37 +0000 (11:59 -0500)]
gnu: Add Catalyst-TraitFor-Request-ProxyBase.

* gnu/packages/web.scm (perl-catalyst-traitfor-request-proxybase): New
  variable.

9 years agognu: Add CatalystX-RoleApplicator.
Eric Bavier [Fri, 3 Apr 2015 16:58:38 +0000 (11:58 -0500)]
gnu: Add CatalystX-RoleApplicator.

* gnu/packages/web.scm (perl-catalystx-roleapplicator): New variable.

9 years agognu: Add MooseX-RelatedClassRoles.
Eric Bavier [Fri, 3 Apr 2015 16:58:11 +0000 (11:58 -0500)]
gnu: Add MooseX-RelatedClassRoles.

* gnu/packages/perl.scm (perl-moosex-relatedclassroles): New variable.

9 years agognu: Add Catalyst-Plugin-StackTrace.
Eric Bavier [Fri, 3 Apr 2015 16:31:46 +0000 (11:31 -0500)]
gnu: Add Catalyst-Plugin-StackTrace.

* gnu/packages/web.scm (perl-catalyst-plugin-stacktrace): New
  variable.

9 years agognu: Add Catalyst-Plugin-Session-Store-FastMmap.
Eric Bavier [Fri, 3 Apr 2015 16:25:34 +0000 (11:25 -0500)]
gnu: Add Catalyst-Plugin-Session-Store-FastMmap.

* gnu/packages/web.scm (perl-catalyst-plugin-session-store-fastmmap): New
  variable.

9 years agognu: Add Cache-FastMmap.
Eric Bavier [Fri, 3 Apr 2015 16:24:52 +0000 (11:24 -0500)]
gnu: Add Cache-FastMmap.

* gnu/packages/perl.scm (perl-cache-fastmmap): New variable.

9 years agognu: Add Catalyst-Plugin-Session-State-Cookie.
Eric Bavier [Fri, 3 Apr 2015 16:14:29 +0000 (11:14 -0500)]
gnu: Add Catalyst-Plugin-Session-State-Cookie.

* gnu/packages/web.scm (perl-catalyst-plugin-session-state-cookie):
  New variable.

9 years agognu: Add Catalyst-Plugin-Captcha.
Eric Bavier [Fri, 3 Apr 2015 16:03:30 +0000 (11:03 -0500)]
gnu: Add Catalyst-Plugin-Captcha.

* gnu/packages/web.scm (perl-catalyst-plugin-captcha): New variable.

9 years agognu: Add GD-SecurityImage.
Eric Bavier [Fri, 3 Apr 2015 15:59:45 +0000 (10:59 -0500)]
gnu: Add GD-SecurityImage.

* gnu/packages/gd.scm (perl-gd-securityimage): New variable.

9 years agognu: Add PerlMagick.
Eric Bavier [Thu, 2 Apr 2015 21:20:24 +0000 (16:20 -0500)]
gnu: Add PerlMagick.

* gnu/packages/imagemagick.scm (perl-image-magick): New variable.

9 years agognu: Add Perl GD.
Eric Bavier [Thu, 2 Apr 2015 18:31:47 +0000 (13:31 -0500)]
gnu: Add Perl GD.

* gnu/packages/gd.scm (perl-gd): New variable.

9 years agognu: gst-plugins-base: Enable GObjection introspection.
宋文武 [Sat, 4 Apr 2015 04:39:31 +0000 (12:39 +0800)]
gnu: gst-plugins-base: Enable GObjection introspection.

* gnu/packages/gstreamer.scm (gst-plugins-base): Add gobject-introspection
  to 'native-inputs'.
  [arguments]<#:phases>: Rename patch-test-pb-utils to patch.  Add
  (setenv "CC" "gcc") to patch phase.

9 years agognu: gst-plugins-base: Move html documentation to 'doc' output.
宋文武 [Sat, 4 Apr 2015 04:30:25 +0000 (12:30 +0800)]
gnu: gst-plugins-base: Move html documentation to 'doc' output.

* gnu/packages/gstreamer.scm (gstreamer)[outputs]: New field.
  [arguments]: Add #:configure-flags.

9 years agognu: gst-plugins-base: Propagate input gstreamer.
宋文武 [Sat, 4 Apr 2015 04:05:10 +0000 (12:05 +0800)]
gnu: gst-plugins-base: Propagate input gstreamer.

* gnu/packages/gstreamer.scm (gst-plugins-base): Move "gstreamer" to
  'propagated-inputs'.

9 years agognu: gstreamer: Move html documentation to 'doc' output.
宋文武 [Sat, 4 Apr 2015 03:33:14 +0000 (11:33 +0800)]
gnu: gstreamer: Move html documentation to 'doc' output.

* gnu/packages/gstreamer.scm (gstreamer)[outputs]: New field.
  [arguments]: Add #:configure-flags.

9 years agognu: gstreamer: Enable GObject introspection.
宋文武 [Sat, 4 Apr 2015 03:14:31 +0000 (11:14 +0800)]
gnu: gstreamer: Enable GObject introspection.

* gnu/packages/gstreamer.scm (gstreamer): Add gobject-introspection
  to 'native-inputs'.
  [arguments]: New field.

9 years agognu: vte: Propagate GnuTLS.
Ludovic Courtès [Fri, 3 Apr 2015 21:27:21 +0000 (23:27 +0200)]
gnu: vte: Propagate GnuTLS.

* gnu/packages/gnome.scm (vte): Move GNUTLS from 'inputs' to
  'propagated-inputs'.  Suggested by 宋文武 <iyzsong@gmail.com>.

9 years agognu: vte: Update to 0.40.0.
Andy Wingo [Fri, 3 Apr 2015 07:21:41 +0000 (09:21 +0200)]
gnu: vte: Update to 0.40.0.

* gnu/packages/gnome.scm (vte): Update to 0.40.0.  Add 'inputs' field.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
9 years agobuild-system/glib-or-gtk: Wrap libexec programs.
Andy Wingo [Fri, 3 Apr 2015 07:20:50 +0000 (09:20 +0200)]
build-system/glib-or-gtk: Wrap libexec programs.

* guix/build/glib-or-gtk-build-system.scm (wrap-all-programs): Also
  wrap binaries in libexec/, such as those launched by dbus services.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
9 years agoservices: lsh: Change #:initialize? to default to #t.
Ludovic Courtès [Fri, 3 Apr 2015 20:12:26 +0000 (22:12 +0200)]
services: lsh: Change #:initialize? to default to #t.

* gnu/services/ssh.scm (lsh-service): Change #:initialize? to default
  to #t.
* doc/guix.texi (Using the Configuration System): Remove #:initialize? #t
  from example.
  (Networking Services): Adjust accordingly.

9 years agoui: Recognize 'guix help'.
Ludovic Courtès [Fri, 3 Apr 2015 20:10:02 +0000 (22:10 +0200)]
ui: Recognize 'guix help'.

Suggested by Andy Wingo.

* guix/ui.scm (guix-main): Add "help" case.

9 years agognu: Remove deleted patch file from build system.
David Thompson [Fri, 3 Apr 2015 20:29:37 +0000 (16:29 -0400)]
gnu: Remove deleted patch file from build system.

* gnu-system.am (dist_patch_DATA): Remove 'gnu/packages/patches/librep-rules.mk.patch'.

9 years agognu: librep: Update to 0.92.5.
宋文武 [Fri, 3 Apr 2015 15:33:41 +0000 (23:33 +0800)]
gnu: librep: Update to 0.92.5.

* gnu/packages/sawfish.scm (librep): Update to 0.92.5.
* gnu/packages/patches/librep-rules.mk.patch: Remove.

9 years agognu: xorg: Add patch to fix sis driver crashes.
Alex Kost [Wed, 1 Apr 2015 19:15:15 +0000 (22:15 +0300)]
gnu: xorg: Add patch to fix sis driver crashes.

* gnu/packages/patches/xf86-video-sis-fix-exa-crash.patch: New file.
* gnu/packages/xorg.scm (xf86-video-sis): Use it.
* gnu-system.am (dist_patch_DATA): Add it.

9 years agopackages: Fix typo.
Alex Kost [Thu, 2 Apr 2015 12:51:05 +0000 (15:51 +0300)]
packages: Fix typo.

* gnu/packages.scm: Fix the name of an exported variable (%patch-path).

9 years agognu: Add libinput.
宋文武 [Fri, 3 Apr 2015 08:49:40 +0000 (16:49 +0800)]
gnu: Add libinput.

* gnu/packages/freedesktop.scm (libinput): New variable.

9 years agodoc: Make it clear that store items must not be deleted by hand.
Ludovic Courtès [Thu, 2 Apr 2015 19:44:35 +0000 (21:44 +0200)]
doc: Make it clear that store items must not be deleted by hand.

* doc/guix.texi (Invoking guix gc): Add that this is the only way to
  delete files.

9 years agodoc: Remove bits about having to create /gnu/store manually.
Ludovic Courtès [Thu, 2 Apr 2015 19:40:01 +0000 (21:40 +0200)]
doc: Remove bits about having to create /gnu/store manually.

* doc/guix.texi (Build Environment Setup): Remove bit about creating
  /gnu/store.  This is done automatically since 15ddeff.

9 years agognu: libva: Fix 'license' field.
Ludovic Courtès [Thu, 2 Apr 2015 17:16:04 +0000 (19:16 +0200)]
gnu: libva: Fix 'license' field.

* gnu/packages/video.scm: Import (guix licenses) with the 'license:'
  prefix and adjust 'license' fields accordingly.  Fixes a bug whereby
  libva was referring to the 'expat' package instead of the 'expat'
  license.

9 years agognu: Add Catalyst-Plugin-AccessLog.
Eric Bavier [Wed, 1 Apr 2015 19:59:07 +0000 (14:59 -0500)]
gnu: Add Catalyst-Plugin-AccessLog.

* gnu/packages/web.scm (perl-catalyst-plugin-accesslog): New variable.

9 years agognu: Add DateTime.
Eric Bavier [Wed, 1 Apr 2015 19:56:47 +0000 (14:56 -0500)]
gnu: Add DateTime.

* gnu/packages/perl.scm (perl-datetime): New variable.

9 years agognu: Add DateTime-Locale.
Eric Bavier [Wed, 1 Apr 2015 19:55:29 +0000 (14:55 -0500)]
gnu: Add DateTime-Locale.

* gnu/packages/perl.scm (perl-datetime-locale): New variable.

9 years agognu: Add DateTime-TimeZone.
Eric Bavier [Wed, 1 Apr 2015 19:28:17 +0000 (14:28 -0500)]
gnu: Add DateTime-TimeZone.

* gnu/packages/perl.scm (perl-datetime-timezone): New variable.

9 years agognu: Add List-AllUtils.
Eric Bavier [Wed, 1 Apr 2015 19:21:50 +0000 (14:21 -0500)]
gnu: Add List-AllUtils.

* gnu/packages/perl.scm (perl-list-allutils): New variable.

9 years agognu: Add Class-Singleton.
Eric Bavier [Wed, 1 Apr 2015 19:04:37 +0000 (14:04 -0500)]
gnu: Add Class-Singleton.

* gnu/packages/perl.scm (perl-class-singleton): New variable.

9 years agognu: Add Catalyst-DispatchType-Regex.
Eric Bavier [Wed, 1 Apr 2015 17:28:57 +0000 (12:28 -0500)]
gnu: Add Catalyst-DispatchType-Regex.

* gnu/packages/web.scm (perl-catalyst-dispatchtype-regex): New
  variable.

9 years agognu: Add fcitx.
宋文武 [Thu, 2 Apr 2015 06:08:37 +0000 (14:08 +0800)]
gnu: Add fcitx.

* gnu/packages/fcitx.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.

9 years agognu: icecat: Apply fixes for CVE-2015-{0801,0807,0815,0816}.
Mark H Weaver [Thu, 2 Apr 2015 05:02:12 +0000 (01:02 -0400)]
gnu: icecat: Apply fixes for CVE-2015-{0801,0807,0815,0816}.

Actually, CVE-2015-0801 and CVE-2015-0816 were already patched in
4c153a9125fa0913077b06b5ed537958ae4ca163, but the corresponding CVEs
were not yet announced.

* gnu/packages/patches/icecat-bug-1146339.patch: Rename to ...
* gnu/packages/patches/icecat-CVE-2015-0801.patch: ... this.
* gnu/packages/patches/icecat-bug-1144991.patch: Rename to ...
* gnu/packages/patches/icecat-CVE-2015-0816.patch: ... this.
* gnu/packages/patches/icecat-CVE-2015-0807.patch,
  gnu/packages/patches/icecat-CVE-2015-0815-pt1.patch,
  gnu/packages/patches/icecat-CVE-2015-0815-pt2.patch,
  gnu/packages/patches/icecat-CVE-2015-0815-pt3.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them, and adapt to renamed files.
* gnu/packages/gnuzilla.scm (icecat): Add patches, and adapt to renamed files.

9 years agognu: linux-libre: Update to 3.19.3.
Mark H Weaver [Wed, 1 Apr 2015 21:37:07 +0000 (17:37 -0400)]
gnu: linux-libre: Update to 3.19.3.

The changes to linux-libre-*.conf are by Jason Self <j@jxself.org>.

* gnu/packages/patches/linux-libre-libreboot-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre): Update to version 3.19.3.
  Add patch.
* gnu/packages/linux-libre-i686.conf,
  gnu/packages/linux-libre-x86_64.conf: Update for 3.19.x.

Co-Authored-By: Jason Self <j@jxself.org>
9 years agoservices: syslog-service: Add 'config-file' argument.
Alex Kost [Sat, 28 Mar 2015 12:42:23 +0000 (15:42 +0300)]
services: syslog-service: Add 'config-file' argument.

* gnu/services/base.scm (syslog-service): Add 'config-file' keyword
argument.
* doc/guix.texi (Base Services): Document it.

9 years agognu: Add clustal omega.
Ricardo Wurmus [Fri, 27 Mar 2015 09:09:10 +0000 (10:09 +0100)]
gnu: Add clustal omega.

* gnu/packages/bioinformatics.scm (clustal-omega): New variable.

9 years agognu: Add argtable.
Ricardo Wurmus [Tue, 31 Mar 2015 14:28:51 +0000 (16:28 +0200)]
gnu: Add argtable.

* gnu/packages/popt.scm (argtable): New variable.

9 years agognu: pulseaudio: Increase timeout on cpu-mix-test.
Mark H Weaver [Tue, 31 Mar 2015 18:13:29 +0000 (14:13 -0400)]
gnu: pulseaudio: Increase timeout on cpu-mix-test.

* gnu/packages/patches/pulseaudio-longer-test-timeout.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (pulseaudio)[source]: Add patch.

9 years agoAdd (guix build gremlin).
Ludovic Courtès [Tue, 31 Mar 2015 20:10:08 +0000 (22:10 +0200)]
Add (guix build gremlin).

* guix/build/gremlin.scm, tests/gremlin.scm: New files.
* Makefile.am (MODULES): Add guix/build/gremlin.scm.
  (SCM_TESTS): Add tests/gremlin.scm.

9 years agotests: Fix module name for 'lint'.
Ludovic Courtès [Tue, 31 Mar 2015 19:59:05 +0000 (21:59 +0200)]
tests: Fix module name for 'lint'.

* tests/lint.scm: Change module name to 'test-lint'.

9 years agognu: xterm: Update to 317.
Mark H Weaver [Tue, 31 Mar 2015 18:30:05 +0000 (14:30 -0400)]
gnu: xterm: Update to 317.

* gnu/packages/xorg.scm (xterm): Update to 317.

9 years agognu: pbtranscript-tofu: Add missing inputs.
Ricardo Wurmus [Tue, 31 Mar 2015 11:46:27 +0000 (13:46 +0200)]
gnu: pbtranscript-tofu: Add missing inputs.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[inputs]: Add missing
  runtime inputs.

9 years agognu: pbtranscript-tofu: Delete pre-built libraries.
Ricardo Wurmus [Tue, 31 Mar 2015 10:37:31 +0000 (12:37 +0200)]
gnu: pbtranscript-tofu: Delete pre-built libraries.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Delete
  "build" directory and any shared objects after unpacking.

9 years agognu: Add python-networkx.
Ricardo Wurmus [Tue, 31 Mar 2015 10:35:09 +0000 (12:35 +0200)]
gnu: Add python-networkx.

* gnu/packages/python.scm (python-networkx, python2-networkx): New variables.

9 years agognu: Add python-decorator.
Ricardo Wurmus [Tue, 31 Mar 2015 10:34:37 +0000 (12:34 +0200)]
gnu: Add python-decorator.

* gnu/packages/python.scm (python-decorator, python2-decorator): New
  variables.

9 years agognu: Add vcftools.
Ricardo Wurmus [Fri, 20 Mar 2015 15:50:33 +0000 (16:50 +0100)]
gnu: Add vcftools.

* gnu/packages/bioinformatics.scm (vcftools): New variable.

9 years agognu: Add cutadapt.
Ricardo Wurmus [Fri, 20 Mar 2015 15:17:55 +0000 (16:17 +0100)]
gnu: Add cutadapt.

* gnu/packages/bioinformatics.scm (cutadapt): New variable.

9 years agognu: ngircd: Fix test suite.
Taylan Ulrich Bayırlı/Kammer [Mon, 30 Mar 2015 08:37:11 +0000 (10:37 +0200)]
gnu: ngircd: Fix test suite.

* gnu/packages/messaging.scm (ngircd): Overwrite getpid.sh with a more
  reliable version.

9 years agoinstall: Create /var/tmp.
Ludovic Courtès [Tue, 31 Mar 2015 11:59:37 +0000 (13:59 +0200)]
install: Create /var/tmp.

Suggested by Mark H Weaver <mhw@netris.org>.

* gnu/build/install.scm (directives): Add /var/tmp.

9 years agognu: Add missing copyright line.
Ludovic Courtès [Mon, 30 Mar 2015 13:37:35 +0000 (15:37 +0200)]
gnu: Add missing copyright line.

* gnu/packages/graphics.scm: Add copyright line for 87bafa0.

9 years agoelf: Add missing argument in 'elf-segment'.
Ludovic Courtès [Mon, 30 Mar 2015 13:20:55 +0000 (15:20 +0200)]
elf: Add missing argument in 'elf-segment'.

* guix/elf.scm (elf-segment): Add missing argument N.

9 years agoRevert "gnu: tzdata: Update to 2015b."
Mark H Weaver [Mon, 30 Mar 2015 09:59:51 +0000 (05:59 -0400)]
Revert "gnu: tzdata: Update to 2015b."

This reverts commit 41fd23334d9932c978579576fd86c5f89894c015.

9 years agognu: Add audacity.
Taylan Ulrich Bayırlı/Kammer [Fri, 20 Feb 2015 20:52:21 +0000 (21:52 +0100)]
gnu: Add audacity.

* gnu/packages/audacity.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.

9 years agognu: portaudio: Patch for Audacity compatibility.
Taylan Ulrich Bayırlı/Kammer [Mon, 2 Mar 2015 00:06:35 +0000 (01:06 +0100)]
gnu: portaudio: Patch for Audacity compatibility.

* gnu/packages/audio.scm (portaudio): Add a patch for Audacity compatibility.
* gnu/packages/patches/portaudio-audacity-compat.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.

9 years agognu: tzdata: Update to 2015b.
Mark H Weaver [Mon, 30 Mar 2015 09:33:33 +0000 (05:33 -0400)]
gnu: tzdata: Update to 2015b.

* gnu/packages/base.scm (tzdata): Update to 2015b.

9 years agognu: liba52: Pass --build to configure.
Mark H Weaver [Mon, 30 Mar 2015 01:35:34 +0000 (21:35 -0400)]
gnu: liba52: Pass --build to configure.

* gnu/packages/video.scm (liba52)[arguments]: Pass --build to configure.

9 years agognu: xbindkeys: Pass --build to configure.
Mark H Weaver [Mon, 30 Mar 2015 01:34:02 +0000 (21:34 -0400)]
gnu: xbindkeys: Pass --build to configure.

* gnu/packages/xdisorg.scm (xbindkeys)[arguments]: Pass --build to
  configure.

9 years agogexp: Slightly simplify 'lower-inputs'.
Ludovic Courtès [Sat, 28 Mar 2015 17:24:03 +0000 (18:24 +0100)]
gexp: Slightly simplify 'lower-inputs'.

* guix/gexp.scm (lower-inputs): Simplify first case by removing the
  'input' binding.

9 years agogexp: Add 'local-file'.
Ludovic Courtès [Sat, 28 Mar 2015 20:26:33 +0000 (21:26 +0100)]
gexp: Add 'local-file'.

* guix/gexp.scm (<local-file>): New record type.
  (local-file): New procedure.
  (local-file-compiler): New compiler.
  (gexp->sexp) <struct? thing>: Handle the case where 'lower' returns a
  file name.
  (text-file*): Update docstring.local-file doc
* tests/gexp.scm ("one local file", "gexp->derivation, local-file"): New
  tests.
* doc/guix.texi (G-Expressions): Mention local files early.  Document
  'local-file'.  Update 'text-file*' documentation.

9 years agodoc: Update gexp wrt. extensibility.
Ludovic Courtès [Sat, 28 Mar 2015 20:16:36 +0000 (21:16 +0100)]
doc: Update gexp wrt. extensibility.

This is a followup to bcb1328.

* doc/guix.texi (G-Expressions): Move paragraph about extensibility
  below.  Remove assumptions that things are either packages or
  derivations.

9 years agognu: Add tocc.
Eric Bavier [Fri, 27 Mar 2015 21:16:41 +0000 (16:16 -0500)]
gnu: Add tocc.

* gnu/packages/search.scm (libtocc, tocc): New variables.