Peter Polidoro [Tue, 5 Apr 2022 19:12:57 +0000 (15:12 -0400)]
gnu: Add python-sre-yield.
* gnu/packages/python-xyz.scm (python-sre-yield): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Peter Polidoro [Mon, 18 Apr 2022 21:17:11 +0000 (23:17 +0200)]
gnu: Add python-ajsonrpc.
* gnu/packages/python-web.scm (python-ajsonrpc): New variable.
Peter Polidoro [Tue, 5 Apr 2022 18:57:16 +0000 (14:57 -0400)]
gnu: Add python-quart.
* gnu/packages/python-web.scm (python-quart): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
jgart [Sat, 9 Apr 2022 15:49:56 +0000 (11:49 -0400)]
gnu: janet: Update to 1.21.1.
* gnu/packages/lisp.scm (janet): Update to 1.21.1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Michael Rohleder [Mon, 11 Apr 2022 14:13:17 +0000 (16:13 +0200)]
gnu: mousepad: Update to 0.5.9.
* gnu/packages/xfce.scm (mousepad): Update to 0.5.9.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Michael Rohleder [Mon, 11 Apr 2022 13:52:30 +0000 (15:52 +0200)]
gnu: orage: Update to 4.16.0.
* gnu/packages/xfce.scm (orage): Update to 4.16.0.
[arguments]: Remove unneeded phase fix-build-with-libical3.
[native-inputs]: Add glib:bin for dbus-binding-tool.
[inputs]: Add dbus-glib for dbus support, libxfce4ui.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Felix Gruber [Sun, 17 Apr 2022 20:04:22 +0000 (20:04 +0000)]
gnu: Remove python-pyyaml-for-awscli.
* gnu/packages/python-xyz.scm (python-pyyaml-for-awscli): Remove
variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Felix Gruber [Sun, 17 Apr 2022 20:04:21 +0000 (20:04 +0000)]
gnu: Remove python-botocore-for-awscli.
* gnu/packages/python-xyz.scm (python-botocore-for-awscli): Remove
variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Felix Gruber [Mon, 18 Apr 2022 11:43:45 +0000 (11:43 +0000)]
gnu: awscli: Update to 1.22.90.
* gnu/packages/python-web.scm (awscli): Update to 1.22.90.
[arguments] Use search-input-file to find groff.
[inputs]: Replace python-botocore-for-awscli with python-botocore.
Add groff.
[native-inputs]: Remove groff.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Felix Gruber [Sun, 17 Apr 2022 20:04:19 +0000 (20:04 +0000)]
gnu: python-jmespath: Update to 1.0.0.
* gnu/packages/python-xyz.scm (python-jmespath): Update to 1.0.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Mon, 18 Apr 2022 20:58:06 +0000 (22:58 +0200)]
gnu: nss-certs: Support cross-compilation.
Reported by phodina <phodina@protonmail.com>.
* gnu/packages/certs.scm (nss-certs)[arguments]: In 'install' phase, do
not refer to '%output' when cross-compiling.
Petr Hodina [Sat, 16 Apr 2022 08:24:46 +0000 (10:24 +0200)]
gnu: ntp: Support cross-compilation.
* gnu/packages/ntp.scm (ntp)[arguments]: Add configuration flag.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Danny Milosavljevic [Thu, 14 Apr 2022 23:38:25 +0000 (01:38 +0200)]
gnu: openjdk17: Make big cursors work.
* gnu/packages/java.scm (openjdk17)[source]: Add patch.
Danny Milosavljevic [Thu, 14 Apr 2022 23:38:24 +0000 (01:38 +0200)]
gnu: openjdk16: Make big cursors work.
* gnu/packages/java.scm (openjdk16)[source]: Add patch.
Danny Milosavljevic [Thu, 14 Apr 2022 23:38:21 +0000 (01:38 +0200)]
gnu: openjdk15: Make big cursors work.
* gnu/packages/patches/openjdk-15-xcursor-no-dynamic.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/java.scm (openjdk15)[source]: Add it.
jgart [Sun, 17 Apr 2022 18:47:48 +0000 (14:47 -0400)]
gnu: Add cl-ipfs-api2.
* gnu/packages/lisp-xyz.scm (cl-ipfs-api2, ecl-cl-ipfs-api2,
sbcl-cl-ipfs-api2): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Leo Famulari [Mon, 18 Apr 2022 04:23:04 +0000 (00:23 -0400)]
gnu: Mutt: Update to 2.2.3 [fixes CVE-2022-1328].
https://gitlab.com/muttmua/mutt/-/issues/404
* gnu/packages/mail.scm (mutt): Update to 2.2.3.
Greg Hogan [Tue, 12 Apr 2022 19:36:39 +0000 (19:36 +0000)]
gnu: ccache: Update to 4.6.
* gnu/packages/ccache.scm (ccache): Update to 4.6.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Raghav Gururajan [Sun, 17 Apr 2022 08:57:15 +0000 (04:57 -0400)]
gnu: gnucash: Update to 4.10.
Variables gnucash and gnucash-docs have to be updated together.
* gnu/packages/gnucash.scm (gnucash)[version]: Update to 4.10.
(gnucash-docs)[version]: Update to 4.10.
[build-system]: Migrate from gnu to cmake.
[arguments]: Disable tests.
Leo Famulari [Fri, 15 Apr 2022 14:52:14 +0000 (10:52 -0400)]
gnu: linux-libre 4.19: Update to 4.19.238.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.238.
(linux-libre-4.19-pristine-source): Update hash.
Leo Famulari [Fri, 15 Apr 2022 14:51:54 +0000 (10:51 -0400)]
gnu: linux-libre 5.4: Update to 5.4.189.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.189.
(linux-libre-5.4-pristine-source): Update hash.
Guillaume Le Vaillant [Sat, 16 Apr 2022 09:49:48 +0000 (11:49 +0200)]
gnu: bitcoin-unlimited: Update to 1.10.0.0.
* gnu/packages/finance.scm (bitcoin-unlimited): Update to 1.10.0.0.
[arguments]: Update 'fix-tests' phase.
Guillaume Le Vaillant [Sat, 16 Apr 2022 09:26:48 +0000 (11:26 +0200)]
gnu: electrum: Update to 4.2.1.
* gnu/packages/finance.scm (electrum): Update to 4.2.1.
[inputs]: Replace python-aiorpcx-0.18 by python-aiorpcx. Add zbar.
Guillaume Le Vaillant [Sat, 16 Apr 2022 09:12:17 +0000 (11:12 +0200)]
gnu: electron-cash: Update to 4.2.7.
* gnu/packages/finance.scm (electron-cash): Update to 4.2.7.
Dominic Martinez [Mon, 11 Apr 2022 17:58:45 +0000 (13:58 -0400)]
gnu: emacs-message-view-patch: Update to 0.2.0-
40bc2e5
* gnu/packages/emacs-xyz (emacs-message-view-patch): Update it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Dominic Martinez [Mon, 11 Apr 2022 17:58:44 +0000 (13:58 -0400)]
gnu: emacs-mu4e-patch: Rename to emacs-message-view-patch
The name was changed upstream to reflect that this extension works for both
mu4e and gnus.
* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): Deprecate it.
(emacs-message-view-patch): Renamed from emacs-mu4e-patch. Description,
synopsis, and inputs adjusted to reflect that mu4e is not required.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Michael Rohleder [Mon, 11 Apr 2022 14:05:35 +0000 (16:05 +0200)]
gnu: xfce4-diskperf-plugin: Update to 2.7.0.
* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Michael Rohleder [Mon, 11 Apr 2022 12:05:01 +0000 (14:05 +0200)]
gnu: elementary-xfce-icon-theme: Update to 0.16.
* gnu/packages/xfce.scm (elementary-xfce-icon-theme): Update to 0.16.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Zhu Zihao [Mon, 11 Apr 2022 10:36:46 +0000 (18:36 +0800)]
gnu: xfce4-terminal: Update to 1.0.0.
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.0.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Vincent Prat [Fri, 8 Apr 2022 14:29:38 +0000 (16:29 +0200)]
gnu: Add python-verspec.
* gnu/packages/python.xyz.scm (python-verspec): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Vincent Prat [Fri, 8 Apr 2022 13:11:21 +0000 (15:11 +0200)]
gnu: Add python-shtab.
* gnu/packages/python-xyz.scm (python-shtab): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Fri, 15 Apr 2022 16:12:24 +0000 (18:12 +0200)]
gnu: shepherd: Support cross-compilation.
Reported by phodina <phodina@protonmail.com>.
* gnu/packages/admin.scm (shepherd-0.9)[arguments]: New field.
[native-inputs]: Add GUILE-FIBERS-1.1.
B. Wilson [Fri, 25 Feb 2022 06:31:05 +0000 (15:31 +0900)]
gnu: mblaze: Offer contrib executables.
* gnu/packages/mail.scm (mblaze)[outputs, inputs]: New fields.
[arguments]: Add #:modules. Add 'install-contrib' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Chadwain Holness [Thu, 24 Mar 2022 17:37:04 +0000 (13:37 -0400)]
gnu: streamlink: Update to 3.2.0.
* gnu/packages/video.scm (streamlink): Update to 3.2.0.
[inputs]: Add python-lxml and python-pycountry, remove python-iso3166 and python-iso639.
[arguments]<#:phases>{check}: Use pytest.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Fri, 15 Apr 2022 13:45:27 +0000 (15:45 +0200)]
gnu: python-lxml: Add 4.7.1.
* gnu/packages/xml.scm (python-lxml-4.7): New variable.
André A. Gomes [Fri, 15 Apr 2022 15:07:05 +0000 (17:07 +0200)]
gnu: cl-nfiles: Update to 0.4.0.
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 0.4.0.
[inputs]: Add sbcl-quri.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Efraim Flashner [Thu, 14 Apr 2022 23:11:03 +0000 (02:11 +0300)]
gnu: python-hmmlearn: Remove cythonized file.
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
Efraim Flashner [Thu, 14 Apr 2022 20:30:27 +0000 (23:30 +0300)]
gnu: python-aiohttp: Remove cythonized files.
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
Efraim Flashner [Thu, 14 Apr 2022 20:21:55 +0000 (23:21 +0300)]
gnu: python-pywavelets: Remove cythonized files.
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
Efraim Flashner [Thu, 14 Apr 2022 19:57:49 +0000 (22:57 +0300)]
gnu: python-igraph: Update to 0.9.10.
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
Efraim Flashner [Thu, 14 Apr 2022 19:57:06 +0000 (22:57 +0300)]
gnu: igraph: Update to 0.9.8.
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
Efraim Flashner [Thu, 14 Apr 2022 19:55:33 +0000 (22:55 +0300)]
gnu: scregseg: Remove cythonized file.
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
Paul A. Patience [Thu, 14 Apr 2022 14:07:53 +0000 (14:07 +0000)]
gnu: cl-py4cl: Update to 0.0.0-1.
2f2a008.
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.
2f2a008.
[arguments]<#:phases>: Adjust substitutions to renamed files.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
jgart [Fri, 1 Apr 2022 20:22:20 +0000 (16:22 -0400)]
gnu: Add emacs-org-modern.
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.
Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
Paul A. Patience [Thu, 14 Apr 2022 13:50:44 +0000 (13:50 +0000)]
gnu: Add cl-numpy-file-format.
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
sbcl-numpy-file-format): New variables.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Foo Chuan Wei [Thu, 14 Apr 2022 08:53:43 +0000 (08:53 +0000)]
gnu: cl-who: Update to 1.1.4-3.
07dafe9.
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.
07dafe9.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
Leo Famulari [Thu, 14 Apr 2022 01:02:31 +0000 (21:02 -0400)]
gnu: linux-libre 5.10: Update to 5.10.111.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
Leo Famulari [Thu, 14 Apr 2022 01:02:13 +0000 (21:02 -0400)]
gnu: linux-libre 5.15: Update to 5.15.34.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
Leo Famulari [Thu, 14 Apr 2022 01:02:00 +0000 (21:02 -0400)]
gnu: linux-libre: Update to 5.16.20.
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
Leo Famulari [Thu, 14 Apr 2022 01:01:46 +0000 (21:01 -0400)]
gnu: linux-libre 5.17: Update to 5.17.3.
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
Leo Famulari [Thu, 14 Apr 2022 03:48:12 +0000 (23:48 -0400)]
gnu: Update linux-libre 5.17 configuration files.
This option that adds new hardware support appeared after the 5.17 release.
* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
Mădălin Ionel Patrașcu [Mon, 11 Apr 2022 14:03:35 +0000 (16:03 +0200)]
gnu: Add r-xcir.
* gnu/packages/bioconductor.scm (r-xcir): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Ludovic Courtès [Thu, 14 Apr 2022 12:47:18 +0000 (14:47 +0200)]
gnu: sundials: Remove input labels.
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
Ludovic Courtès [Thu, 14 Apr 2022 09:57:16 +0000 (11:57 +0200)]
gnu: sundials: Update to 6.1.1.
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags. Change "MPI_ENABLE" to "ENABLE_MPI".
Ludovic Courtès [Sat, 9 Apr 2022 09:02:33 +0000 (11:02 +0200)]
daemon: Support systemd-style socket activation.
* nix/nix-daemon/guix-daemon.cc (SD_LISTEN_FDS_START): New macro.
(systemd_activation_sockets): New function.
(main): Use it. Remove obsolete 'printMsg' call.
* doc/guix.texi (Invoking guix-daemon): Document socket activation.
Ludovic Courtès [Wed, 6 Apr 2022 20:37:33 +0000 (22:37 +0200)]
publish: Support systemd-style socket activation.
* guix/scripts/publish.scm (systemd-socket): New procedure.
(guix-publish): Add 'style' variable. Adjust startup message depending
on whether STYLE is 'systemd.
* doc/guix.texi (Invoking guix publish): Mention socket activation.
Ludovic Courtès [Wed, 6 Apr 2022 09:20:21 +0000 (11:20 +0200)]
publish: Use SRFI-71 instead of SRFI-11.
* guix/scripts/publish.scm (make-request-handler): Use 'let' instead of
'let-values'.
Ludovic Courtès [Thu, 14 Apr 2022 09:32:57 +0000 (11:32 +0200)]
gnu: guile-fibers@1.1: Support cross-compilation.
Fixes <https://issues.guix.gnu.org/54793>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.
* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
Ludovic Courtès [Wed, 13 Apr 2022 15:56:37 +0000 (17:56 +0200)]
style: Correctly read dots in pairs and improper lists.
Until now dots were read as symbols.
* guix/scripts/style.scm (read-with-comments)[dot]: New variable.
[dot?, reverse/dot]: New procedures.
Use 'reverse/dot' instead of 'reverse' when reading lists.
* tests/style.scm ("read-with-comments: dot notation")
("((a . 1) (b . 2))", "(a b c . boom)"): New tests.
Ricardo Wurmus [Thu, 14 Apr 2022 11:38:30 +0000 (13:38 +0200)]
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section.
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
Ricardo Wurmus [Thu, 14 Apr 2022 11:37:23 +0000 (13:37 +0200)]
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section.
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
Ricardo Wurmus [Thu, 14 Apr 2022 11:35:22 +0000 (13:35 +0200)]
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
Ricardo Wurmus [Thu, 14 Apr 2022 11:34:11 +0000 (13:34 +0200)]
gnu: r-absseq: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
Ricardo Wurmus [Thu, 14 Apr 2022 11:32:52 +0000 (13:32 +0200)]
gnu: r-abarray: Move out of experiments section.
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
Ricardo Wurmus [Thu, 14 Apr 2022 11:31:33 +0000 (13:31 +0200)]
gnu: r-aneufinder: Move to packages section.
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
Mădălin Ionel Patrașcu [Tue, 12 Apr 2022 21:57:55 +0000 (23:57 +0200)]
gnu: Add r-absseq.
* gnu/packages/bioconductor.scm (r-absseq): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Tue, 12 Apr 2022 16:15:09 +0000 (18:15 +0200)]
gnu: Add r-abarray.
* gnu/packages/bioconductor.scm (r-abarray): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Tue, 12 Apr 2022 22:30:47 +0000 (00:30 +0200)]
gnu: Add r-acde.
* gnu/packages/bioconductor.scm (r-acde): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Mon, 11 Apr 2022 14:29:16 +0000 (16:29 +0200)]
gnu: Add r-wppi.
* gnu/packages/bioconductor.scm (r-wppi): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Wed, 13 Apr 2022 14:12:58 +0000 (16:12 +0200)]
gnu: Add r-acme.
* gnu/packages/bioconductor.scm (r-acme): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Wed, 13 Apr 2022 12:21:38 +0000 (14:21 +0200)]
gnu: Add r-acgh.
* gnu/packages/bioconductor.scm (r-acgh): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Attila Lendvai [Thu, 14 Apr 2022 08:14:40 +0000 (10:14 +0200)]
gnu: libfprint: Fix build, add python for the tests.
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Wed, 13 Apr 2022 12:04:42 +0000 (14:04 +0200)]
gnu: Add r-ace.
* gnu/packages/bioconductor.scm (r-ace): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Mădălin Ionel Patrașcu [Wed, 13 Apr 2022 11:21:03 +0000 (13:21 +0200)]
gnu: r-catalyst: Update description.
* gnu/packages/bioconductor.scm (r-catalyst)[description]: Add Texinfo markup
and clarify a sentence.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:04 +0000 (10:59 +0200)]
gnu: r-tcgabiolinks: Update to 2.22.4.
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.22.4.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:04 +0000 (10:59 +0200)]
gnu: r-omnipathr: Update to 3.2.8.
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.2.8.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:04 +0000 (10:59 +0200)]
gnu: r-bgeedb: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.20.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:04 +0000 (10:59 +0200)]
gnu: r-gviz: Update to 1.38.4.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.38.4.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:04 +0000 (10:59 +0200)]
gnu: r-catalyst: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.18.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:03 +0000 (10:59 +0200)]
gnu: r-mscoreutils: Update to 1.6.2.
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.6.2.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:03 +0000 (10:59 +0200)]
gnu: r-singler: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-singler): Update to 1.8.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:03 +0000 (10:59 +0200)]
gnu: r-s4vectors: Update to 0.32.4.
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.4.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:03 +0000 (10:59 +0200)]
gnu: r-experimenthub: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.2.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:03 +0000 (10:59 +0200)]
gnu: r-universalmotif: Update to 1.12.4.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.12.4.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:03 +0000 (10:59 +0200)]
gnu: r-variancepartition: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.24.1.
[propagated-inputs]: Add r-aod, r-rdpack, and r-rhpcblasctl.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:02 +0000 (10:59 +0200)]
gnu: r-cytolib: Update to 2.6.2.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.6.2.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:02 +0000 (10:59 +0200)]
gnu: r-rsubread: Update to 2.8.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.2.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:02 +0000 (10:59 +0200)]
gnu: r-ropls: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.26.4.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:02 +0000 (10:59 +0200)]
gnu: r-birewire: Update to 3.26.5.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.26.5.
[propagated-inputs]: Remove r-tsne; add r-rtsne.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:02 +0000 (10:59 +0200)]
gnu: r-biocfilecache: Update to 2.2.1.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.2.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:01 +0000 (10:59 +0200)]
gnu: r-massspecwavelet: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.60.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:01 +0000 (10:59 +0200)]
gnu: r-atacseqqc: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.18.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:01 +0000 (10:59 +0200)]
gnu: r-genomicscores: Update to 2.6.1.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.6.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:01 +0000 (10:59 +0200)]
gnu: r-clusterprofiler: Update to 4.2.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.2.2.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:01 +0000 (10:59 +0200)]
gnu: r-enrichplot: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.14.2.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:00 +0000 (10:59 +0200)]
gnu: r-geoquery: Update to 2.62.2.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.2.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:00 +0000 (10:59 +0200)]
gnu: r-karyoploter: Update to 1.20.3.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.20.3.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:00 +0000 (10:59 +0200)]
gnu: r-destiny: Update to 3.8.1.
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.8.1.
[native-inputs]: Add r-knitr.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:00 +0000 (10:59 +0200)]
gnu: r-chippeakanno: Update to 3.28.1.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.28.1.
Ricardo Wurmus [Thu, 14 Apr 2022 08:59:00 +0000 (10:59 +0200)]
gnu: r-diffbind: Update to 3.4.11.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.4.11.
HCoop / jackhill / guix / guix.git / log