zimoun [Wed, 27 Nov 2019 16:59:25 +0000 (17:59 +0100)]
gnu: r-quadprog: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Pierre Neidhardt [Mon, 11 Nov 2019 14:38:11 +0000 (15:38 +0100)]
gnu: Add glib-with-documentation.
* gnu/packages/glib.scm (glib-with-documentation): New variable.
(glib)[properties]: Hide package.
Efraim Flashner [Wed, 27 Nov 2019 09:24:41 +0000 (11:24 +0200)]
gnu: denemo: Move some inputs to native-inputs.
* gnu/packages/music.scm (denemo)[inputs]: Move intltool, gtk-doc,
libtool ...
[native-inputs]: .. to here.
Ricardo Wurmus [Wed, 27 Nov 2019 08:57:45 +0000 (09:57 +0100)]
gnu: python-seaborn: Disable matrix test.
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Add phase
"fix-tests".
Ricardo Wurmus [Wed, 27 Nov 2019 07:21:12 +0000 (08:21 +0100)]
gnu: python-matplotlib: Update to 3.1.2.
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.2.
[arguments]: Disable test_backend_webagg and test_constrainedlayout; skip
other tests tagged with "webagg".
Ricardo Wurmus [Tue, 26 Nov 2019 20:01:47 +0000 (21:01 +0100)]
gnu: python-seaborn: Add patch to fix tests.
* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add upstream patch to
fix test failures.
Ludovic Courtès [Tue, 26 Nov 2019 22:51:11 +0000 (23:51 +0100)]
daemon: 'deletePath' uses 'statx' when available.
* nix/libutil/util.cc (_deletePath) [HAVE_STATX]: Use 'statx'.
Ludovic Courtès [Tue, 26 Nov 2019 22:35:24 +0000 (23:35 +0100)]
daemon: GC remove-unused-links phase uses 'statx' when available.
* config-daemon.ac: Check for 'statx'.
* nix/libstore/gc.cc (LocalStore::removeUnusedLinks) [HAVE_STATX]: Use
'statx' instead of 'lstat'.
Ludovic Courtès [Tue, 26 Nov 2019 11:30:45 +0000 (12:30 +0100)]
substitute: Make '%allow-unauthenticated-substitutes?' public.
* guix/scripts/substitute.scm (warn-about-missing-authentication): New
procedure.
(%allow-unauthenticated-substitutes?): Turn into a public parameter and
use 'warn-about-missing-authentication'.
(valid-narinfo?): Adjust accordingly.
* tests/substitute.scm (call-with-narinfo): Likewise.
Ludovic Courtès [Tue, 26 Nov 2019 11:21:26 +0000 (12:21 +0100)]
ui: Adjust SRFI-34 exception handling to Guile 2.9.5.
* guix/ui.scm (report-load-error, warn-about-load-error)
(read/eval): Match (or 'srfi-34 '%exception) instead of just 'srfi-34 to
match what Guile 2.9.5 does.
Alexandros Theodotou [Fri, 8 Nov 2019 09:25:08 +0000 (09:25 +0000)]
gnu: Add helm.
* gnu/packages/music.scm: (helm): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
Mark H Weaver [Tue, 26 Nov 2019 19:38:02 +0000 (14:38 -0500)]
gnu: linux-libre@4.9: Update to 4.9.203.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.203.
(linux-libre-4.9-pristine-source): Update hash.
Mark H Weaver [Tue, 26 Nov 2019 19:37:01 +0000 (14:37 -0500)]
gnu: linux-libre@4.4: Update to 4.4.203.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.203.
(linux-libre-4.4-pristine-source): Update hash.
Efraim Flashner [Tue, 26 Nov 2019 18:57:33 +0000 (20:57 +0200)]
gnu: emacs-shift-number: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-shift-number)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:56:03 +0000 (20:56 +0200)]
gnu: emacs-rsw-elisp: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-rsw-elisp)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:53:34 +0000 (20:53 +0200)]
gnu: emacs-helm-mode-manager: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-helm-mode-manager)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:51:31 +0000 (20:51 +0200)]
gnu: emacs-m-buffer-el: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-m-buffer-el)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:49:55 +0000 (20:49 +0200)]
gnu: emacs-validate: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-validate)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:48:19 +0000 (20:48 +0200)]
gnu: emacs-groovy-modes: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-groovy-modes)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:46:27 +0000 (20:46 +0200)]
gnu: emacs-pretty-mode: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-pretty-mode)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:44:58 +0000 (20:44 +0200)]
gnu: emacs-auto-complete: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-auto-complete)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:43:04 +0000 (20:43 +0200)]
gnu: emacs-cyberpunk-theme: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-cyberpunk-theme)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:41:03 +0000 (20:41 +0200)]
gnu: emacs-flx: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-flx)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:33:29 +0000 (20:33 +0200)]
gnu: emacs-neotree: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-neotree)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:31:33 +0000 (20:31 +0200)]
gnu: emacs-better-defaults: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-better-defaults)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:30:02 +0000 (20:30 +0200)]
gnu: emacs-solarized-theme: Don't use unstable tarball.
* gnu/packages/emacs-xyz.scm (emacs-solarized-theme)[source]: Download
using git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:27:24 +0000 (20:27 +0200)]
gnu: python-django-jinja: Don't use unstable tarball.
* gnu/packages/django.scm (python-django-jinja)[source]: Download using
git-fetch.
Efraim Flashner [Tue, 26 Nov 2019 18:25:10 +0000 (20:25 +0200)]
gnu: python-django-debug-toolbar: Don't use unstable tarball.
* gnu/packages/django.scm (python-django-debug-toolbar)[source]:
Download using git-fetch.
Hartmut Goebel [Tue, 26 Nov 2019 17:38:53 +0000 (18:38 +0100)]
gnu: pdfposter: Update to 0.7.post1.
* gnu/packages/pdf.scm (pdfposter): Update to 0.7.post1.
[source]<pyi-uri> Remove extra file extension.
[arguments]: No longer use python-2. Update comment.
[inputs]: Replace PyPDF by PyPDF2.
Nicolas Goaziou [Tue, 26 Nov 2019 16:48:03 +0000 (17:48 +0100)]
gnu: musescore: Update to 3.3.3.
* gnu/packages/music.scm (musescore): Update to 3.3.3.
Efraim Flashner [Tue, 26 Nov 2019 16:15:54 +0000 (18:15 +0200)]
gnu: gnuastro: Update to 0.11.
* gnu/packages/astronomy.scm (gnuastro): Update to 0.11.
Efraim Flashner [Tue, 26 Nov 2019 15:38:33 +0000 (17:38 +0200)]
gnupg: Update to 2.2.18.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.18.
Efraim Flashner [Tue, 26 Nov 2019 09:44:21 +0000 (11:44 +0200)]
doc: Fix typo.
* doc/guix.texi (php-fpm-service-type): Note that the socket-group
default is "nagios" and not "php-fpm".
Hartmut Goebel [Fri, 22 Nov 2019 09:26:15 +0000 (10:26 +0100)]
gnu: kdeconnect: Remove useless code.
After fixing wrap-qt-program, setting QT_PLUGIN_PATH here is no longer
necessary.
* gnu/packages/kde.scm (kdeconnect)[arguments]<phases>{wrap-executable}:
Remove setting QT_PLUGIN_PATH.
Hartmut Goebel [Fri, 22 Nov 2019 08:56:20 +0000 (09:56 +0100)]
gnu: python-pyqt: Fix output directory for plugins.
This defaults to QT_INSTALL_PLUGINS, thus we should use the same
sub-directory ($out/lib/qt5/plugins) here.
* gnu/packages/qt.scm (python-pyqt)[arguments]<phases>{configure}:
Change base file name for plugins.
Hartmut Goebel [Fri, 22 Nov 2019 08:25:56 +0000 (09:25 +0100)]
guix: Fix wrap-qt-program.
Directory names added here need to match qtbase's native-search-path
specifications.
* guix/build/qt-utils.scm (wrap-qt-program): Change paths used for
QML2_IMPORT_PATH and QT_PLUGIN_PATH.
Hartmut Goebel [Fri, 22 Nov 2019 08:07:50 +0000 (09:07 +0100)]
gnu: sddm: Fix output directory for QML files.
Path must match qtbase's native-search-path specification, otherwise it
will not be picked up by other packages.
* gnu/packages/display-managers.scm (sddm)[arguments]<configure-flags>:
Change value of "-DQT_IMPORTS_DIR".
Efraim Flashner [Tue, 26 Nov 2019 09:00:09 +0000 (11:00 +0200)]
gnu: youtube-dl: Update to 2019.11.22.
* gnu/packages/video.scm (youtube-dl): Update to 2019.11.22.
Christopher Baines [Tue, 26 Nov 2019 07:21:15 +0000 (07:21 +0000)]
gnu: guix-data-service: Update to 0.0.1-6.
af13248.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-6.
af13248.
Brett Gilio [Fri, 22 Nov 2019 22:44:05 +0000 (16:44 -0600)]
gnu: emacs-dashboard: Update to 1.6.0.
From
9e3e34ccabc6330c9e0528028bef64e388783c78 Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg@posteo.net>
Date: Fri, 22 Nov 2019 16:42:54 -0600
Subject: [PATCH] gnu: emacs-dashboard: Update to 1.6.0.
* gnu/packages/emacs-xyz.scm (emacs-dashboard): Update to 1.6.0.
Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
Guillaume Le Vaillant [Wed, 20 Nov 2019 12:46:39 +0000 (13:46 +0100)]
gnu: gnucash: Activate database support.
* gnu/packages/gnucash.scm (gnucash)[inputs]: Add libdbi and libdbi-drivers.
[arguments]: Remove '-DWITH_SQL=OFF' from 'configure-flags' and add
'GNC_DBD_DIR' to program wrapping.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Guillaume Le Vaillant [Wed, 20 Nov 2019 12:46:38 +0000 (13:46 +0100)]
gnu: Add libdbi-drivers.
* gnu/packages/databases.scm (libdbi-drivers): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Guillaume Le Vaillant [Wed, 20 Nov 2019 12:46:37 +0000 (13:46 +0100)]
gnu: Add libdbi.
* gnu/packages/databases.scm (libdbi): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Guillaume Le Vaillant [Tue, 12 Nov 2019 18:05:18 +0000 (19:05 +0100)]
gnu: Add pam-mount.
* gnu/packages/admin.scm (pam-mount): New variable.
* gnu/packages/patches/pam-mount-luks2-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Guillaume Le Vaillant [Tue, 12 Nov 2019 18:05:17 +0000 (19:05 +0100)]
gnu: Add libhx.
* gnu/packages/c.scm (libhx): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Vagrant Cascadian [Tue, 12 Nov 2019 03:14:16 +0000 (19:14 -0800)]
daemon: boost::format: Fix typo "referred".
* nix/boost/format/exceptions.hpp (too_few_args): Fix typo.
(too_many_args): Fix typo.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Ludovic Courtès [Thu, 21 Nov 2019 14:41:11 +0000 (15:41 +0100)]
guix build: '--keep-failed' implies '--no-offload'.
* guix/scripts/build.scm (set-build-options-from-command-line): Pass
#:offload? #f when 'keep-failed? is true.
* doc/guix.texi (Common Build Options): Document it.
Ludovic Courtès [Thu, 21 Nov 2019 14:28:13 +0000 (15:28 +0100)]
Use 'offload?' instead of 'build-hook?' internally.
* guix/scripts/archive.scm (%default-options): Replace 'build-hook?'
with 'offload?'.
* guix/scripts/build.scm (set-build-options-from-command-line): Pass
#:offload? instead of #:use-build-hook?.
(%standard-build-options): Use the 'offload? key instead of 'build-hook?.
(%default-options): Replace 'build-hook?' with 'offload?'.
* guix/scripts/copy.scm (%default-options): Likewise.
* guix/scripts/deploy.scm (%default-options): Likewise.
* guix/scripts/environment.scm (%default-options): Likewise.
* guix/scripts/pack.scm (%default-options): Likewise.
* guix/scripts/package.scm (%default-options): Likewise.
* guix/scripts/pull.scm (%default-options): Likewise.
* guix/scripts/system.scm (%default-options): Likewise.
* guix/scripts/time-machine.scm (%default-options): Likewise.
* guix/store.scm (set-build-options): Have #:use-build-hook? default
to *unspecified*. Add #:offload?. Add call to 'warn-about-deprecation'
when #:use-build-hook? is specified.
Ludovic Courtès [Thu, 21 Nov 2019 14:14:33 +0000 (15:14 +0100)]
guix build, daemon: Rename "--no-build-hook" to "--no-offload".
This is a followup to
bc69ea2d605810cc32e13ed03d5848b8dc358b61.
* guix/scripts/build.scm (show-build-options-help): Rename
"--no-build-hook" to "--no-offload".
(%standard-build-options): Likewise, and warn when "--no-build-hook" is
passed.
* nix/nix-daemon/guix-daemon.cc (options): Add "--no-offload" and mark
"--no-build-hook" as hidden.
* guix/scripts/offload.scm: Adjust comment.
* doc/guix.texi (Invoking guix-daemon, Common Build Options): Replace
"--no-build-hook" with "--no-offload".
* etc/completion/fish/guix.fish, etc/completion/zsh/_guix: Adjust
accordingly.
Ludovic Courtès [Mon, 25 Nov 2019 21:03:37 +0000 (22:03 +0100)]
doc: cookbook: Add cross-references to the Guile manual.
* doc/guix-cookbook.texi (A Scheme Crash Course): Add cross-reference to
the Guile manual.
Ludovic Courtès [Mon, 25 Nov 2019 20:55:46 +0000 (21:55 +0100)]
doc: cookbook: Use @result{} & co. instead of a '>' prompt.
* doc/guix-cookbook.texi (A Scheme Crash Course)
(Extended example): Use @result{}, @print{}, and @error{}.
Ludovic Courtès [Mon, 25 Nov 2019 20:44:29 +0000 (21:44 +0100)]
doc: cookbook: Use Texinfo quotes.
* doc/guix-cookbook.texi: Use Texinfo quotes ``like this'' instead of
straight quotes or curly quotes.
Ludovic Courtès [Mon, 25 Nov 2019 20:35:53 +0000 (21:35 +0100)]
doc: cookbook: Add cross-reference about ./pre-inst-env.
* doc/guix-cookbook.texi (Direct checkout hacking): Refer to "Running
Guix Before It Is Installed".
Ludovic Courtès [Mon, 25 Nov 2019 20:30:40 +0000 (21:30 +0100)]
doc: cookbook: Use @lisp for Scheme snippets.
* doc/guix-cookbook.texi: Use @lisp instead of @example where
appropriate.
Ludovic Courtès [Sun, 24 Nov 2019 19:48:11 +0000 (20:48 +0100)]
tests: Avoid unnecessary use of 'mock'.
* tests/build-utils.scm ("wrap-script, simple case"): Use the real
'which' instead of mocking it.
Ludovic Courtès [Sun, 24 Nov 2019 19:47:20 +0000 (20:47 +0100)]
tests: Avoid (catch 'srfi-34 …) form.
* tests/build-utils.scm ("wrap-script, raises condition"): Use 'guard'
instead of "catch 'srfi-34".
Mark H Weaver [Mon, 25 Nov 2019 06:47:07 +0000 (01:47 -0500)]
gnu: linux-libre: Update to 5.3.13.
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.13.
(linux-libre-5.3-pristine-source): Update hash.
Mark H Weaver [Mon, 25 Nov 2019 06:46:15 +0000 (01:46 -0500)]
gnu: linux-libre@4.19: Update to 4.19.86.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.86.
(linux-libre-4.19-pristine-source): Update hash.
Mark H Weaver [Mon, 25 Nov 2019 06:45:42 +0000 (01:45 -0500)]
gnu: linux-libre@4.14: Update to 4.14.156.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.156.
(linux-libre-4.14-pristine-source): Update hash.
Alex Griffin [Wed, 20 Nov 2019 01:59:32 +0000 (19:59 -0600)]
gnu: Add netcat-openbsd.
* gnu/packages/admin.scm (netcat-openbsd): New variable.
Ricardo Wurmus [Mon, 25 Nov 2019 14:24:50 +0000 (15:24 +0100)]
gnu: r-rrcov: Update to 1.4-9.
* gnu/packages/statistics.scm (r-rrcov): Update to 1.4-9.
Ricardo Wurmus [Mon, 25 Nov 2019 14:24:40 +0000 (15:24 +0100)]
gnu: r-future: Update to 1.15.1.
* gnu/packages/cran.scm (r-future): Update to 1.15.1.
Ricardo Wurmus [Mon, 25 Nov 2019 14:24:28 +0000 (15:24 +0100)]
gnu: r-epi: Update to 2.40.
* gnu/packages/cran.scm (r-epi): Update to 2.40.
Ricardo Wurmus [Mon, 25 Nov 2019 14:24:02 +0000 (15:24 +0100)]
gnu: r-vioplot: Update to 0.3.3.
* gnu/packages/cran.scm (r-vioplot): Update to 0.3.3.
Jan Nieuwenhuizen [Wed, 18 Sep 2019 19:21:55 +0000 (21:21 +0200)]
gnu: mes: Update to 0.21.
* gnu/packages/mes.scm (mes): Update to 0.21.
Ricardo Wurmus [Sun, 24 Nov 2019 23:11:05 +0000 (00:11 +0100)]
gnu: guile-gi: Update to 0.2.1.
* gnu/packages/guile-xyz.scm (guile-gi): Update to 0.2.1.
[arguments]: Add phase to start Xorg server for tests.
[native-inputs]: Add xorg-server.
Ricardo Wurmus [Sun, 24 Nov 2019 23:09:15 +0000 (00:09 +0100)]
gnu: Add bsequencer.
* gnu/packages/music.scm (bsequencer): New variable.
Ricardo Wurmus [Sun, 24 Nov 2019 14:09:54 +0000 (15:09 +0100)]
gnu: r-bookdown: Update to 0.16.
* gnu/packages/cran.scm (r-bookdown): Update to 0.16.
Ricardo Wurmus [Sun, 24 Nov 2019 14:09:36 +0000 (15:09 +0100)]
gnu: r-protviz: Update to 0.5.1.
* gnu/packages/cran.scm (r-protviz): Update to 0.5.1.
[inputs]: Remove perl and python-2.
Ricardo Wurmus [Sun, 24 Nov 2019 14:09:26 +0000 (15:09 +0100)]
gnu: r-rnifti: Update to 1.0.0.
* gnu/packages/cran.scm (r-rnifti): Update to 1.0.0.
Ricardo Wurmus [Sun, 24 Nov 2019 14:09:13 +0000 (15:09 +0100)]
gnu: r-tidytree: Update to 0.3.0.
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.0.
Ricardo Wurmus [Sun, 24 Nov 2019 14:08:43 +0000 (15:08 +0100)]
gnu: r-sjplot: Update to 2.8.0.
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.0.
[propagated-inputs]: Remove r-broom and r-nlme; add r-effectsize and
r-parameters.
Ricardo Wurmus [Sun, 24 Nov 2019 14:08:22 +0000 (15:08 +0100)]
gnu: r-tidyverse: Update to 1.3.0.
* gnu/packages/cran.scm (r-tidyverse): Update to 1.3.0.
[propagated-inputs]: Add r-pillar.
Ricardo Wurmus [Sun, 24 Nov 2019 14:06:13 +0000 (15:06 +0100)]
gnu: r-parameters: Update to 0.3.0.
* gnu/packages/cran.scm (r-parameters): Update to 0.3.0.
Ricardo Wurmus [Sun, 24 Nov 2019 14:05:19 +0000 (15:05 +0100)]
gnu: r-abn: Update to 2.2.
* gnu/packages/cran.scm (r-abn): Update to 2.2.
Ricardo Wurmus [Sun, 24 Nov 2019 14:05:04 +0000 (15:05 +0100)]
gnu: r-limsolve: Update to 1.5.6.
* gnu/packages/cran.scm (r-limsolve): Update to 1.5.6.
Ricardo Wurmus [Sun, 24 Nov 2019 14:04:29 +0000 (15:04 +0100)]
gnu: r-prodlim: Update to 2019.11.13.
* gnu/packages/cran.scm (r-prodlim): Update to 2019.11.13.
Ricardo Wurmus [Sun, 24 Nov 2019 14:04:17 +0000 (15:04 +0100)]
gnu: r-webshot: Update to 0.5.2.
* gnu/packages/cran.scm (r-webshot): Update to 0.5.2.
Ricardo Wurmus [Sun, 24 Nov 2019 14:04:06 +0000 (15:04 +0100)]
gnu: r-insight: Update to 0.7.0.
* gnu/packages/cran.scm (r-insight): Update to 0.7.0.
Ricardo Wurmus [Sun, 24 Nov 2019 14:03:45 +0000 (15:03 +0100)]
gnu: Add r-effectsize.
* gnu/packages/cran.scm (r-effectsize): New variable.
Ricardo Wurmus [Sun, 24 Nov 2019 14:02:53 +0000 (15:02 +0100)]
gnu: r-rcppeigen: Update to 0.3.3.7.0.
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.7.0.
Ricardo Wurmus [Sun, 24 Nov 2019 14:02:45 +0000 (15:02 +0100)]
gnu: r-rlang: Update to 0.4.2.
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.2.
Ricardo Wurmus [Sun, 24 Nov 2019 14:02:31 +0000 (15:02 +0100)]
gnu: r-digest: Update to 0.6.23.
* gnu/packages/statistics.scm (r-digest): Update to 0.6.23.
Ricardo Wurmus [Sun, 24 Nov 2019 13:06:16 +0000 (14:06 +0100)]
gnu: r-pheatmap: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-pheatmap): Move from here...
* gnu/packages/cran.scm (r-pheatmap): ...to here.
Ricardo Wurmus [Sun, 24 Nov 2019 13:05:08 +0000 (14:05 +0100)]
gnu: r-scales: Update to 1.1.0.
* gnu/packages/cran.scm (r-scales): Update to 1.1.0.
[propagated-inputs]: Remove r-rcpp; add r-farver and r-lifecycle.
Ricardo Wurmus [Sun, 24 Nov 2019 13:03:26 +0000 (14:03 +0100)]
gnu: r-scales: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-scales): Move variable from here...
* gnu/packages/cran.scm (r-scales): ...to here.
Efraim Flashner [Mon, 25 Nov 2019 07:58:15 +0000 (09:58 +0200)]
gnu: sdsl-lite: Don't use bundled libraries.
* gnu/packages/datastructures.scm (sdsl-lite)[source]: Remove bundled
libraries in a snippet. Add patch to link to external libraries.
[arguments]: Add phase to install static library.
[native-inputs]: Add libdivsufsort.
Efraim Flashner [Mon, 25 Nov 2019 07:59:38 +0000 (09:59 +0200)]
gnu: sdsl-lite: Remove unused inputs.
Documentation also wants graphviz, which drastically increases
'guiz size sdsl-lite'.
* gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Remove
doxygen.
Efraim Flashner [Mon, 25 Nov 2019 08:55:01 +0000 (10:55 +0200)]
gnu: libdivsufsort: Move to datastructures.scm.
* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
Efraim Flashner [Mon, 25 Nov 2019 07:36:32 +0000 (09:36 +0200)]
gnu: Add boost-static.
* gnu/packages/boost.scm (boost-static): New variable.
Efraim Flashner [Sun, 24 Nov 2019 21:57:52 +0000 (23:57 +0200)]
gnu: coq-bignums: Don't use unstable tarball.
* gnu/pacakges/coq.scm (coq-bignums)[source]: Download using git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 21:48:44 +0000 (23:48 +0200)]
gnu: bioperl-minimal: Don't use unstable tarball.
* gnu/packages/bioinformatics.scm (bioperl-minimal)[source]: Download
using git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 18:01:17 +0000 (20:01 +0200)]
gnu: innoextract: Update to 1.8.
* gnu/packages/compression.scm (innoextract): Update to 1.8.
Efraim Flashner [Sun, 24 Nov 2019 17:36:21 +0000 (19:36 +0200)]
gnu: innoextract: Don't use unstable tarball.
* gnu/packages/compression.scm (innoextract)[source]: Download the
release tarball.
Efraim Flashner [Sun, 24 Nov 2019 17:30:45 +0000 (19:30 +0200)]
gnu: unshield: Don't use unstable tarball.
* gnu/packages/compression.scm (unshield)[source]: Download using
git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 17:27:33 +0000 (19:27 +0200)]
gnu: snappy: Don't use unstable tarball.
* gnu/packages/compression.scm (snappy)[source]: Download using
git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 17:23:56 +0000 (19:23 +0200)]
gnu: sfarklib: Don't use unstable tarball.
* gnu/packages/compression.scm (sfarklib)[source]: Download using
git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 17:21:07 +0000 (19:21 +0200)]
gnu: cinnamon-desktop: Don't use unstable tarball.
* gnu/packages/cinnamon.scm (cinnamon-desktop)[source]: Download using
git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 17:16:50 +0000 (19:16 +0200)]
gnu: sparsehash: Don't use unstable tarball.
* gnu/packages/datastructures.scm (sparsehash)[source]: Download using
git-fetch.
Efraim Flashner [Sun, 24 Nov 2019 14:17:39 +0000 (16:17 +0200)]
gnu: imlib2: Sort inputs alphabetically.
* gnu/packages/image.scm (imlib2)[inputs]: Sort alphabetically.
HCoop / jackhill / guix / guix.git / log