jackhill/guix/guix.git
4 years agostore: Add 'with-build-handler'.
Ludovic Courtès [Wed, 18 Mar 2020 21:17:39 +0000 (22:17 +0100)]
store: Add 'with-build-handler'.

* guix/store.scm (current-build-prompt): New variable.
(call-with-build-handler, invoke-build-handler): New procedures.
(with-build-handler): New macro.
* tests/store.scm ("with-build-handler"): New test.

4 years agosyscalls: 'with-file-lock' re-grabs lock when reentering its dynamic extent.
Ludovic Courtès [Thu, 19 Mar 2020 10:14:29 +0000 (11:14 +0100)]
syscalls: 'with-file-lock' re-grabs lock when reentering its dynamic extent.

* guix/build/syscalls.scm (call-with-file-lock)
(call-with-file-lock/no-wait): Initialize PORT in the 'dynamic-wind'
"in" handler.  This allows us to re-enter a captured continuation and
have the lock grabbed anew.

4 years agotests: install: Abort when one installation step fails.
Mathieu Othacehe [Sun, 22 Mar 2020 09:52:43 +0000 (10:52 +0100)]
tests: install: Abort when one installation step fails.

When marionette-eval calls fail in gui-test-program, the installation
continues which results in two scenarios:

- hang forever at the next marionette-eval call,

- keep going and start a broken installation, which is annoying because it
clears the terminal and hides the error.

Make sure that gui-test-program is exited with #f return code when one of the
marionette-eval calls fail.

* gnu/tests/install.scm (gui-test-program): Add a new macro
"marionette-eval*". Throw an exception when one on the marionette-eval calls
fail.

4 years agognu: python-bleach: Update to 3.1.3 (fixes CVE-2020-6816).
Efraim Flashner [Sun, 22 Mar 2020 08:39:08 +0000 (10:39 +0200)]
gnu: python-bleach: Update to 3.1.3 (fixes CVE-2020-6816).

* gnu/packages/python-xyz.scm (python-bleach): Update to 3.1.3.
[native-inputs]: Remove python-pytest-runner2. Add python-datrie,
python-genshi, python-lxml.
[home-page]: Update to new home-page.

4 years agognu: Add python-block-tracing.
Efraim Flashner [Tue, 17 Mar 2020 07:05:14 +0000 (09:05 +0200)]
gnu: Add python-block-tracing.

* gnu/packages/python-xyz.scm (python-block-tracing): New variable.

4 years agognu: Add python-privy.
Efraim Flashner [Tue, 17 Mar 2020 07:03:55 +0000 (09:03 +0200)]
gnu: Add python-privy.

* gnu/packages/python-crypto.scm (python-privy): New variable.

4 years agognu: Add python-argon2-cffi.
Efraim Flashner [Tue, 17 Mar 2020 07:02:53 +0000 (09:02 +0200)]
gnu: Add python-argon2-cffi.

* gnu/packages/python-crypto.scm (python-argon2-cffi): New variable.

4 years agognu: Add python-userspacefs.
Efraim Flashner [Tue, 17 Mar 2020 07:01:59 +0000 (09:01 +0200)]
gnu: Add python-userspacefs.

* gnu/packages/python-xyz.scm (python-userspacefs): New variable.

4 years agognu: Add python-fusepyng.
Efraim Flashner [Tue, 17 Mar 2020 07:01:13 +0000 (09:01 +0200)]
gnu: Add python-fusepyng.

* gnu/packages/python-xyz.scm (python-fusepyng): New variable.

4 years agognu: Add python-keyrings.alt.
Efraim Flashner [Tue, 17 Mar 2020 06:59:18 +0000 (08:59 +0200)]
gnu: Add python-keyrings.alt.

* gnu/packages/python-crypto.scm (python-keyring.alt): New variable.

4 years agognu: edirect: Install more programs.
Efraim Flashner [Sun, 15 Mar 2020 21:27:45 +0000 (23:27 +0200)]
gnu: edirect: Install more programs.

* gnu/packages/bioinformatics.scm (edirect)[arguments]: Add
'patch-programs phase to work around not finding binaries in the PATH.
Rewrite 'install phase to install many more scripts. Rewrite
'wrap-program to wrap more scripts with more programs.
[inputs]: Add edirect-go-programs.
[native-search-paths]: New field.

4 years agognu: Add edirect-go-programs.
Efraim Flashner [Sun, 15 Mar 2020 21:21:34 +0000 (23:21 +0200)]
gnu: Add edirect-go-programs.

* gnu/packages/bioinformatics.scm (edirect-go-programs): New variable.
(edirect)[source]: Adjust snippet to not use non-free software.

4 years agognu: Add go-github-com-surgebase-porter2.
Efraim Flashner [Sun, 15 Mar 2020 21:16:03 +0000 (23:16 +0200)]
gnu: Add go-github-com-surgebase-porter2.

* gnu/packages/golang.scm (go-github-com-surgebase-porter2): New variable.

4 years agognu: Add go-github-com-surge-glog.
Efraim Flashner [Sun, 15 Mar 2020 21:15:28 +0000 (23:15 +0200)]
gnu: Add go-github-com-surge-glog.

* gnu/packages/golang.scm (go-github-com-surge-glog): New variable.

4 years agognu: Add go-github-com-pbnjay-memory.
Efraim Flashner [Sun, 15 Mar 2020 21:14:45 +0000 (23:14 +0200)]
gnu: Add go-github-com-pbnjay-memory.

* gnu/packages/golang.scm (go-github-com-pbnjay-memory): New variable.

4 years agognu: Add go-github-com-klauspost-cpuid.
Efraim Flashner [Sun, 15 Mar 2020 21:14:15 +0000 (23:14 +0200)]
gnu: Add go-github-com-klauspost-cpuid.

* gnu/packages/golang.scm (go-github-com-klauspost-cpuid): New variable.

4 years agognu: Add go-github-com-gedex-inflector.
Efraim Flashner [Sun, 15 Mar 2020 21:13:42 +0000 (23:13 +0200)]
gnu: Add go-github-com-gedex-inflector.

* gnu/packages/golang.scm (go-github-com-gedex-inflector): New variable.

4 years agognu: Add go-github-com-fogleman-gg.
Efraim Flashner [Sun, 15 Mar 2020 21:13:04 +0000 (23:13 +0200)]
gnu: Add go-github-com-fogleman-gg.

* gnu/packages/golang.scm (go-github-com-fogleman-gg): New variable.

4 years agognu: Add go-github-com-golang-freetype.
Efraim Flashner [Sun, 15 Mar 2020 21:12:19 +0000 (23:12 +0200)]
gnu: Add go-github-com-golang-freetype.

* gnu/packages/golang.scm (go-github-com-golang-freetype): New variable.

4 years agognu: Add go-golang-org-rainycape-unidecode.
Efraim Flashner [Sun, 15 Mar 2020 21:11:40 +0000 (23:11 +0200)]
gnu: Add go-golang-org-rainycape-unidecode.

* gnu/packages/golang.scm (go-golang-org-rainycape-unidecode): New variable.

4 years agognu: Add go-golang-org-x-image.
Efraim Flashner [Sun, 15 Mar 2020 13:55:22 +0000 (15:55 +0200)]
gnu: Add go-golang-org-x-image.

* gnu/packages/golang.scm (go-golang-org-x-image): New variable.

4 years agoservices: Add fontconfig-file-system-service.
Efraim Flashner [Wed, 18 Mar 2020 10:38:15 +0000 (12:38 +0200)]
services: Add fontconfig-file-system-service.

* gnu/services/desktop.scm (%fontconfig-file-system,
fontconfig-file-system-service): New variables.
(%desktop-services): Add fontconfig-file-system-service.

4 years agognu: cutter: Update to 1.10.1.
pinoaffe@airmail.cc [Sat, 21 Mar 2020 08:58:35 +0000 (08:58 +0000)]
gnu: cutter: Update to 1.10.1.

* gnu/packages/engineering.scm (cutter): Update to 1.10.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agognu: radare2: Update to 4.2.1.
pinoaffe@airmail.cc [Sat, 21 Mar 2020 08:57:21 +0000 (08:57 +0000)]
gnu: radare2: Update to 4.2.1.

* gnu/packages/engineering.scm (radare2): Update to 4.2.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agognu: clipmenu: Improve the package definition
Damien Cassou [Sat, 21 Mar 2020 16:33:39 +0000 (17:33 +0100)]
gnu: clipmenu: Improve the package definition

* gnu/packages/xdisorg.scm (clipmenu): Add the package's unit-tests to the
check phase.  Wrap the program so the PATH contains all dependencies. The
previous approach to patch the script was incomplete and more complex.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agognu: clipnotify: Comment on the lack of a test suite.
Damien Cassou [Sat, 21 Mar 2020 16:45:11 +0000 (17:45 +0100)]
gnu: clipnotify: Comment on the lack of a test suite.

* gnu/packages/xdisorg.scm (clipnotify): Add a comment

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agognu: clipmenu: Re-indent.
Damien Cassou [Sat, 21 Mar 2020 16:42:07 +0000 (17:42 +0100)]
gnu: clipmenu: Re-indent.

* gnu/packages/xdisorg.scm (clipmenu): Re-indent

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
4 years agoguix-install.sh: /etc/profile.d/guix.sh sources ~/.guix-profile/etc/profile.
Ludovic Courtès [Sat, 21 Mar 2020 22:27:12 +0000 (23:27 +0100)]
guix-install.sh: /etc/profile.d/guix.sh sources ~/.guix-profile/etc/profile.

* etc/guix-install.sh (sys_create_init_profile): Source
~/.guix-profile/etc/profile instead of running 'guix package
--search-paths=prefix'

4 years agoguix-install.sh: Add a trailing colon to 'INFOPATH'.
Ludovic Courtès [Sat, 21 Mar 2020 22:22:19 +0000 (23:22 +0100)]
guix-install.sh: Add a trailing colon to 'INFOPATH'.

Fixes <https://bugs.gnu.org/39984>.
Suggested by Adam Porter <adam@alphapapa.net>.

* etc/guix-install.sh (sys_create_init_profile): Add a trailing colon to
'INFOPATH'.

4 years agodownload: Delete the output file upon failure.
Ludovic Courtès [Sat, 21 Mar 2020 22:08:04 +0000 (23:08 +0100)]
download: Delete the output file upon failure.

This allows ENOSPC conditions to be properly reported as such rather
than as a hash mismatch due to the availability of a truncated file.

Fixes <https://bugs.gnu.org/39993>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

* guix/build/download.scm (url-fetch): In the failure case, delete FILE.

4 years agognu: Add dragonfly-reverb
Alexandros Theodotou [Tue, 25 Feb 2020 15:17:10 +0000 (15:17 +0000)]
gnu: Add dragonfly-reverb

* gnu/packages/music.scm (dragonfly-reverb): New variable.

4 years agognu: linux-libre: Update to 5.4.27.
Mark H Weaver [Sat, 21 Mar 2020 20:35:12 +0000 (16:35 -0400)]
gnu: linux-libre: Update to 5.4.27.

* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.27.
(linux-libre-5.4-pristine-source): Update hash.

4 years agognu: linux-libre@4.19: Update to 4.19.112.
Mark H Weaver [Sat, 21 Mar 2020 20:34:33 +0000 (16:34 -0400)]
gnu: linux-libre@4.19: Update to 4.19.112.

* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.112.
(linux-libre-4.19-pristine-source): Update hash.

4 years agognu: linux-libre@4.14: Update to 4.14.174.
Mark H Weaver [Sat, 21 Mar 2020 20:33:13 +0000 (16:33 -0400)]
gnu: linux-libre@4.14: Update to 4.14.174.

* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.174.
(linux-libre-4.14-pristine-source): Update hash.

4 years agognu: linux-libre@4.9: Update to 4.9.217.
Mark H Weaver [Sat, 21 Mar 2020 20:32:48 +0000 (16:32 -0400)]
gnu: linux-libre@4.9: Update to 4.9.217.

* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.217.
(linux-libre-4.9-pristine-source): Update hash.

4 years agognu: linux-libre@4.4: Update to 4.4.217.
Mark H Weaver [Sat, 21 Mar 2020 20:31:51 +0000 (16:31 -0400)]
gnu: linux-libre@4.4: Update to 4.4.217.

* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.217.
(linux-libre-4.4-pristine-source): Update hash.

4 years agognu: ghc-stylish-haskell: Deprecate older duplicate package.
John Soo [Fri, 13 Dec 2019 14:32:00 +0000 (06:32 -0800)]
gnu: ghc-stylish-haskell: Deprecate older duplicate package.

* gnu/packages/haskell-xyz.scm (ghc-stylish-haskell): Deprecate it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: stylish-haskell: Update description.
John Soo [Fri, 13 Dec 2019 14:29:27 +0000 (06:29 -0800)]
gnu: stylish-haskell: Update description.

* gnu/packages/haskell-apps.scm (stylish-haskell): Update description.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: Add r-oai.
Wiktor Żelazny [Thu, 3 Oct 2019 13:51:30 +0000 (15:51 +0200)]
gnu: Add r-oai.

* gnu/packages/cran.scm (r-oai): new variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: Add r-latex2exp.
Wiktor Żelazny [Thu, 3 Oct 2019 13:49:13 +0000 (15:49 +0200)]
gnu: Add r-latex2exp.

* gnu/packages/cran.scm (r-latex2exp): new variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: Add r-httpcode.
Wiktor Żelazny [Thu, 3 Oct 2019 13:46:37 +0000 (15:46 +0200)]
gnu: Add r-httpcode.

* gnu/packages/cran.scm (r-httpcode): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: global: Add 'python-wrapper' as input.
wednesday [Wed, 24 Apr 2019 15:27:36 +0000 (16:27 +0100)]
gnu: global: Add 'python-wrapper' as input.

* gnu/packages/code.scm (global)[inputs]: Add 'python-wrapper' to fix
tagging python code.

4 years agoRevert "gnu: Remove qemu-minimal@2.10."
Marius Bakke [Sat, 21 Mar 2020 20:24:28 +0000 (21:24 +0100)]
Revert "gnu: Remove qemu-minimal@2.10."

This package was still in use by american-fuzzy-lop.

This reverts commit 559f37328851fc1ae1d90f27fab7beff3d804421.

4 years agognu: gpgme: Fix build.
Tobias Geerinckx-Rice [Sat, 21 Mar 2020 19:41:28 +0000 (20:41 +0100)]
gnu: gpgme: Fix build.

Reported by joshuaBPMan on #guix.

* gnu/packages/gnupg.scm (gpgme)[arguments]: Add ‘disable-failing-test’ phase.

4 years agognu: python-pygraphviz: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:45:44 +0000 (00:45 +0100)]
gnu: python-pygraphviz: Use HTTPS home page.

* gnu/packages/graphviz.scm (python-pygraphviz)[home-page]: Use HTTPS.

4 years agognu: python-tables: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:59:12 +0000 (00:59 +0100)]
gnu: python-tables: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-tables)[home-page]: Use HTTPS.

4 years agognu: python-future: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:01:24 +0000 (00:01 +0100)]
gnu: python-future: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-future)[home-page]: Use HTTPS.

4 years agognu: python-scrypt: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:07:12 +0000 (00:07 +0100)]
gnu: python-scrypt: Use HTTPS home page.

* gnu/packages/python-crypto.scm (python-scrypt)[home-page]: Use HTTPS.

4 years agognu: python-scikit-learn: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:21:20 +0000 (00:21 +0100)]
gnu: python-scikit-learn: Use HTTPS home page.

* gnu/packages/machine-learning.scm (python-scikit-learn)[home-page]: Use HTTPS.

4 years agognu: python2-pyro: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:57:00 +0000 (00:57 +0100)]
gnu: python2-pyro: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python2-pyro)[home-page]: Use HTTPS.

4 years agognu: python2-element-tree: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:22:11 +0000 (00:22 +0100)]
gnu: python2-element-tree: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python2-element-tree)[home-page]: Use HTTPS.

4 years agognu: python-cheetah: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:29:14 +0000 (00:29 +0100)]
gnu: python-cheetah: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-cheetah)[home-page]: Use HTTPS.

4 years agognu: python-kivy: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:50:22 +0000 (00:50 +0100)]
gnu: python-kivy: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python-kivy)[home-page]: Use HTTPS.

4 years agognu: Add gnome-shell-extension-topicons-redux.
Ekaitz Zarraga [Fri, 20 Mar 2020 19:34:51 +0000 (19:34 +0000)]
gnu: Add gnome-shell-extension-topicons-redux.

* gnu/packages/gnome-xyz.scm (gnome-shell-extension-topicons-redux): New
variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: ghc-extra: Downgrade to 1.6.21.
Alexandru-Sergiu Marton [Sat, 21 Mar 2020 07:10:57 +0000 (09:10 +0200)]
gnu: ghc-extra: Downgrade to 1.6.21.

* gnu/packages/haskell-xyz.scm (ghc-extra): Downgrade to 1.6.21.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
4 years agognu: Remove qemu-minimal@2.10.
Marius Bakke [Sat, 21 Mar 2020 19:16:34 +0000 (20:16 +0100)]
gnu: Remove qemu-minimal@2.10.

* gnu/packages/virtualization.scm (qemu-minimal-2.10): Remove variable.

4 years agognu: Remove flex@2.6.1.
Marius Bakke [Sat, 21 Mar 2020 19:15:48 +0000 (20:15 +0100)]
gnu: Remove flex@2.6.1.

* gnu/packages/flex.scm (flex-2.6.1): Remove variable.

4 years agognu: GRUB: Use the latest version of QEMU for tests.
Marius Bakke [Sat, 21 Mar 2020 14:14:08 +0000 (15:14 +0100)]
gnu: GRUB: Use the latest version of QEMU for tests.

* gnu/packages/bootloaders.scm (grub)[native-inputs]: Change from
QEMU-MINIMAL-2.10 to QEMU-MINIMAL.

4 years agognu: GRUB: Build with the latest version of Flex.
Marius Bakke [Sat, 21 Mar 2020 14:13:28 +0000 (15:13 +0100)]
gnu: GRUB: Build with the latest version of Flex.

* gnu/packages/bootloaders.scm (grub)[native-inputs]: Change from FLEX-2.6.1
to FLEX.

4 years agognu: python-grpcio: Update to 1.27.2.
Marius Bakke [Sat, 21 Mar 2020 11:46:13 +0000 (12:46 +0100)]
gnu: python-grpcio: Update to 1.27.2.

* gnu/packages/rpc.scm (python-grpcio): Update to 1.27.2.
[source](modules, snippet): New fields.
[arguments]: Add phases to use system libraries and the correct compiler.
[inputs]: Add C-ARES, OPENSSL, and ZLIB.

4 years agognu: TensorFlow: Correct gRPC input.
Marius Bakke [Sat, 21 Mar 2020 14:19:03 +0000 (15:19 +0100)]
gnu: TensorFlow: Correct gRPC input.

* gnu/packages/machine-learning.scm (tensorflow)[native-inputs]: Move
GRPC:STATIC ...
[inputs]: ... here.

4 years agognu: gRPC: Update to 1.27.3.
Marius Bakke [Sat, 21 Mar 2020 11:33:15 +0000 (12:33 +0100)]
gnu: gRPC: Update to 1.27.3.

* gnu/packages/rpc.scm (grpc): Update to 1.27.3.
[arguments]: Add "-DgRPC_ABSL_PROVIDER=package" in #:configure-flags.
[inputs]: Add ABSEIL-CPP.
(grpc-1.16.1): New public variable.
* gnu/packages/hyperledger.scm (hyperledger-iroha)[inputs]: Change from GRPC
to GRPC-1.16.
* gnu/packages/machine-learning.scm (tensorflow)[native-inputs, inputs]: Likewise.

4 years agognu: python-gast: Update to 0.3.3.
Marius Bakke [Sat, 21 Mar 2020 08:56:05 +0000 (09:56 +0100)]
gnu: python-gast: Update to 0.3.3.

* gnu/packages/python-xyz.scm (python-gast): Update to 0.3.3.

4 years agognu: go-gopkg.in-mgo.v2: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:43:31 +0000 (00:43 +0100)]
gnu: go-gopkg.in-mgo.v2: Use HTTPS home page.

* gnu/packages/databases.scm (go-gopkg.in-mgo.v2)[home-page]: Use HTTPS.

4 years agognu: lua5.2-expat: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:00:24 +0000 (00:00 +0100)]
gnu: lua5.2-expat: Use HTTPS home page.

* gnu/packages/lua.scm (lua5.2-expat)[home-page]: Use HTTPS.

4 years agognu: git-test-sequence: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:35:05 +0000 (00:35 +0100)]
gnu: git-test-sequence: Use HTTPS home page.

* gnu/packages/version-control.scm (git-test-sequence)[home-page]: Use HTTPS.

4 years agognu: ogre: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:12:00 +0000 (00:12 +0100)]
gnu: ogre: Use HTTPS home page.

* gnu/packages/graphics.scm (ogre)[home-page]: Use HTTPS.

4 years agognu: ruby-sequel: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:03:43 +0000 (00:03 +0100)]
gnu: ruby-sequel: Use HTTPS home page.

* gnu/packages/ruby.scm (ruby-sequel)[home-page]: Use HTTPS.

4 years agognu: ruby-rspec: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:13:19 +0000 (00:13 +0100)]
gnu: ruby-rspec: Use HTTPS home page.

* gnu/packages/ruby.scm (ruby-rspec)[home-page]: Use HTTPS.

4 years agognu: opencl-clhpp: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:33:58 +0000 (00:33 +0100)]
gnu: opencl-clhpp: Use HTTPS home page.

* gnu/packages/opencl.scm (opencl-clhpp)[home-page]: Use HTTPS.

4 years agognu: gnupg: Update to 2.2.20 [security fix].
Tobias Geerinckx-Rice [Sat, 21 Mar 2020 15:19:01 +0000 (16:19 +0100)]
gnu: gnupg: Update to 2.2.20 [security fix].

* gnu/packages/gnupg.scm (gnupg): Update to 2.2.20.

4 years agognu: Add emacs-objed.
6033fe7de85d [Wed, 18 Mar 2020 17:56:33 +0000 (18:56 +0100)]
gnu: Add emacs-objed.

*gnu/packages/emacs-xyz.scm (emacs-objed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
4 years agognu: blktrace: Update to db4f634.
Vincent Legoll [Sat, 21 Mar 2020 12:08:25 +0000 (13:08 +0100)]
gnu: blktrace: Update to db4f634.

* gnu/packages/linux.scm (blktrace): Update to db4f634.
[revision]: Increment variable.
[patches]: Remove variable.
* gnu/packages/patches/blktrace-use-rmtree.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
4 years agognu: coreutils: Improve description.
Vitaliy Shatrov [Sat, 21 Mar 2020 14:03:01 +0000 (15:03 +0100)]
gnu: coreutils: Improve description.

* gnu/packages/base.scm (coreutils): Improve description and state that there
is no shell included.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
4 years agognu: Add r-boa.
Danny Milosavljevic [Thu, 19 Mar 2020 22:52:50 +0000 (23:52 +0100)]
gnu: Add r-boa.

* gnu/packages/cran.scm (r-boa): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
4 years agognu: Add r-crochet.
Naga Malleswari [Thu, 19 Mar 2020 07:59:05 +0000 (13:29 +0530)]
gnu: Add r-crochet.

* gnu/packages/cran.scm (r-crochet): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
4 years agognu: Add hash-extender.
Jakub Kądziołka [Fri, 20 Mar 2020 19:31:59 +0000 (20:31 +0100)]
gnu: Add hash-extender.

* gnu/packages/crypto.scm (hash-extender): New variable.
* gnu/packages/patches/hash-extender-test-suite.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the new file.

4 years agognu: python-grpcio: Move to (gnu packages rpc).
Marius Bakke [Sat, 21 Mar 2020 11:20:14 +0000 (12:20 +0100)]
gnu: python-grpcio: Move to (gnu packages rpc).

* gnu/packages/python-xyz.scm (python-grpcio): Move from here ...
* gnu/packages/rpc.scm (python-grpcio): ... to here.

4 years agognu: gRPC: Move to (gnu packages rpc).
Marius Bakke [Sat, 21 Mar 2020 11:17:11 +0000 (12:17 +0100)]
gnu: gRPC: Move to (gnu packages rpc).

* gnu/packages/machine-learning.scm (grpc): Move to ...
* gnu/packages/rpc.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/hyperledger.scm: Adjust module imports.

4 years agognu: python-language-server: Build with python-jedi@0.15.2.
Marius Bakke [Sat, 21 Mar 2020 10:58:26 +0000 (11:58 +0100)]
gnu: python-language-server: Build with python-jedi@0.15.2.

* gnu/packages/python-xyz.scm (python-language-server)[propagated-inputs]:
Remove PYTHON-JEDI.  Add PYTHON-JEDI-0.15.
(python-jedi-0.15, python-parso-0.5): New public variables.

4 years agognu: python-django: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:05:03 +0000 (00:05 +0100)]
gnu: python-django: Use HTTPS home page.

* gnu/packages/django.scm (python-django)[home-page]: Use HTTPS.

4 years agognu: python2-s3cmd: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:17:13 +0000 (00:17 +0100)]
gnu: python2-s3cmd: Use HTTPS home page.

* gnu/packages/python-xyz.scm (python2-s3cmd)[home-page]: Use HTTPS.

4 years agognu: rsync: Use system zlib and popt libraries.
Tobias Geerinckx-Rice [Sat, 21 Mar 2020 00:08:08 +0000 (01:08 +0100)]
gnu: rsync: Use system zlib and popt libraries.

Reduce our likelihood of contracting security bugs at the expense of
compression ratio (in some cases) and compatibility with rsync≤3.1.1.

rsync@3.1.2 was released in 2014.  Time to upgrade your CentOS box.

* gnu/packages/rsync.scm (rsync)[inputs]: Add popt and zlib.
[arguments]: Use them.

4 years agognu: perl-archive-zip: Update to 1.68.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 04:14:57 +0000 (05:14 +0100)]
gnu: perl-archive-zip: Update to 1.68.

* gnu/packages/perl-compression.scm (perl-archive-zip): Update to 1.68.

4 years agognu: guile3.0-syntax-highlight: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:12:08 +0000 (00:12 +0100)]
gnu: guile3.0-syntax-highlight: Use HTTPS home page.

* gnu/packages/guile-xyz.scm (guile3.0-syntax-highlight)[home-page]: Use HTTPS.

4 years agognu: guile-rsvg: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:23:31 +0000 (00:23 +0100)]
gnu: guile-rsvg: Use HTTPS home page.

* gnu/packages/gtk.scm (guile-rsvg)[home-page]: Use HTTPS.

4 years agognu: hdf-eos2: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:02:00 +0000 (00:02 +0100)]
gnu: hdf-eos2: Use HTTPS home page.

* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.

4 years agognu: ruby-omniauth: Update to 1.9.1.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 03:26:42 +0000 (04:26 +0100)]
gnu: ruby-omniauth: Update to 1.9.1.

* gnu/packages/ruby.scm (ruby-omniauth): Update to 1.9.1.

4 years agognu: Use ‘license:’ prefix in (gnu packages libreoffice).
Tobias Geerinckx-Rice [Mon, 17 Feb 2020 20:21:55 +0000 (21:21 +0100)]
gnu: Use ‘license:’ prefix in (gnu packages libreoffice).

* gnu/packages/libreoffice.scm: Import (guix licenses) with a #:prefix
and adjust all callers.

4 years agognu: r-maptools: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:07:28 +0000 (00:07 +0100)]
gnu: r-maptools: Use HTTPS home page.

* gnu/packages/cran.scm (r-maptools)[home-page]: Use HTTPS.

4 years agognu: ocaml-sedlex: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:25:19 +0000 (00:25 +0100)]
gnu: ocaml-sedlex: Use HTTPS home page.

* gnu/packages/ocaml.scm (ocaml-sedlex)[home-page]: Use HTTPS.

4 years agognu: ocaml-tsdl: Update to 0.9.7.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 02:01:02 +0000 (03:01 +0100)]
gnu: ocaml-tsdl: Update to 0.9.7.

* gnu/packages/ocaml.scm (ocaml-tsdl): Update to 0.9.7.
[native-inputs]: Remove ocaml-ocb-stubblr.
[inputs]: Remove ocaml-result.

4 years agognu: ocaml-tsdl: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:32:29 +0000 (00:32 +0100)]
gnu: ocaml-tsdl: Use HTTPS home page.

* gnu/packages/ocaml.scm (ocaml-tsdl)[home-page]: Use HTTPS.

4 years agognu: sbcl-parse-number: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:31:29 +0000 (00:31 +0100)]
gnu: sbcl-parse-number: Use HTTPS home page.

* gnu/packages/lisp-xyz.scm (sbcl-parse-number)[home-page]: Use HTTPS.

4 years agognu: sbcl-parse-js: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:49:52 +0000 (00:49 +0100)]
gnu: sbcl-parse-js: Use HTTPS home page.

* gnu/packages/lisp-xyz.scm (sbcl-parse-js)[home-page]: Use HTTPS.

4 years agognu: sbcl-cl+ssl: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:18:43 +0000 (00:18 +0100)]
gnu: sbcl-cl+ssl: Use HTTPS home page.

* gnu/packages/lisp-xyz.scm (sbcl-cl+ssl)[home-page]: Use HTTPS.

4 years agognu: cl-jonathan: Use HTTPS home page.
Tobias Geerinckx-Rice [Fri, 20 Mar 2020 23:27:48 +0000 (00:27 +0100)]
gnu: cl-jonathan: Use HTTPS home page.

* gnu/packages/lisp-xyz.scm (cl-jonathan)[home-page]: Use HTTPS.

4 years agognu: python-botocore: Update to 1.15.26.
Christopher Baines [Sat, 21 Mar 2020 00:01:19 +0000 (00:01 +0000)]
gnu: python-botocore: Update to 1.15.26.

To keep compatability with awscli.

* gnu/packages/python-xyz.scm (python-botocore): Update to 1.15.26.

4 years agopackages: 'package-field-location' preserves the original file name.
Ludovic Courtès [Fri, 20 Mar 2020 22:34:03 +0000 (23:34 +0100)]
packages: 'package-field-location' preserves the original file name.

Fixes <https://bugs.gnu.org/39425>.
Reported by Alex ter Weele <alex.ter.weele@gmail.com>.

* guix/packages.scm (package-field-location): Remove 'with-fluids' for
'%file-port-name-canonicalization'.  Change the 'file' field of the
resulting location to FILE.

4 years agognu: guix: Install SysV init files to $(prefix)/etc.
Ludovic Courtès [Fri, 20 Mar 2020 22:12:36 +0000 (23:12 +0100)]
gnu: guix: Install SysV init files to $(prefix)/etc.

Fixes <https://bugs.gnu.org/40153>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.

This is a followup to 73fbe04107d38f4561636c74d28d7a4935cbb1ef.

* gnu/packages/package-management.scm (guix)[arguments]: In 'bootstrap'
phase, change "sysvinitservicedir" in 'nix/local.mk'.