#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages sphinx)
#:use-module (gnu packages ssh)
#:use-module (gnu packages tcl)
#:use-module (gnu packages tex)
(define-public r-cluster
(package
(name "r-cluster")
- (version "2.0.9")
+ (version "2.1.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "cluster" version))
(sha256
(base32
- "1bg5dvs4bzj0rp75jpxaklz12rvyh5w99h7zkvfgpgn86ljg1rlf"))))
+ "055af3yz2biqbsbwm4arwr1yqnj4gicpzv2i6dbfl5pnz2z5byga"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-139")
+ (version "3.1-140")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
(base32
- "0fap121c18nbznyzvnqvsdiszg2nbmkas6zhgrz1f8jiv1lzqq04"))))
+ "0k9x5j34fx093a023da9ny3b3101lbwpmfm27mkvfj950l22z88x"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-digest
(package
(name "r-digest")
- (version "0.6.18")
+ (version "0.6.19")
(source
(origin
(method url-fetch)
(uri (cran-uri "digest" version))
(sha256
- (base32 "0k3iv0r8wy8w7zchmgrnrqv3bc149075j4817kf0q521vi4f6vbj"))))
+ (base32 "1x6cbj9qvkk7pxv9xdqibazw3x8psjp6x0m0ildx1jwyb2ymkl98"))))
(build-system r-build-system)
;; Vignettes require r-knitr, which requires r-digest, so we have to
;; disable them and the tests.
(define-public r-ggplot2
(package
(name "r-ggplot2")
- (version "3.1.1")
+ (version "3.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplot2" version))
(sha256
- (base32 "0y8cks9r9hvjlx0isnvbgs3p0al167hlr3q7c3syfcj77dzjkpmz"))))
+ (base32 "1cvk9pw59kxx19kamqwa15h26rbznp0vvqpn7y8kgjssnrzqkdii"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
("r-gtable" ,r-gtable)
- ("r-plyr" ,r-plyr)
("r-lazyeval" ,r-lazyeval)
("r-mass" ,r-mass)
("r-mgcv" ,r-mgcv)
(define-public r-gdtools
(package
(name "r-gdtools")
- (version "0.1.8")
+ (version "0.1.9")
(source
(origin
(method url-fetch)
(uri (cran-uri "gdtools" version))
(sha256
(base32
- "1ayy0s699ghaz34lklvcskfwman3x2n2772s5sa5x9k9xgsnxwcl"))))
+ "0w4fihf52q5qxxk0lg36x6yvjjl8vw66y60ncdjs5fvnxqn5z2vb"))))
(build-system r-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
(define-public r-evaluate
(package
(name "r-evaluate")
- (version "0.13")
+ (version "0.14")
(source (origin
(method url-fetch)
(uri (cran-uri "evaluate" version))
(sha256
(base32
- "0igvc27rsqxcswjb9slnpi5d509rffxn1y5d82hgqvv970nl3p2q"))))
+ "0a2y7j534gbgixkwj9r1z76l2vssw4g1hznzbpclc076wkdqpj58"))))
(build-system r-build-system)
(home-page "https://github.com/hadley/evaluate")
(synopsis "Parsing and evaluation tools for R")
(define-public r-formatr
(package
(name "r-formatr")
- (version "1.6")
+ (version "1.7")
(source (origin
(method url-fetch)
(uri (cran-uri "formatR" version))
(sha256
(base32
- "0a9229rg3s9qga5v2fwfdqr0z3bk2yycv8kijrcm3jh66l68zjgm"))))
+ "1nsxbrx31k3y6yql30qkrvdfyznlia2qfvwv95mfiy7m7wdn4rm3"))))
(build-system r-build-system)
(home-page "http://yihui.name/formatR")
(synopsis "Format R code automatically")
(define-public r-mime
(package
(name "r-mime")
- (version "0.6")
+ (version "0.7")
(source (origin
(method url-fetch)
(uri (cran-uri "mime" version))
(sha256
(base32
- "00f4gw4sg1kn03s67gficxgb7a7fb6pwhlvrxrml05q1mc2vcxa7"))))
+ "12vpip67ajb90b8p96w43ir7mavrw2i61bwvpfnrlmlj9kj3w20i"))))
(build-system r-build-system)
(home-page "https://github.com/yihui/mime")
(synopsis "R package to map filenames to MIME types")
(define-public r-markdown
(package
(name "r-markdown")
- (version "0.9")
+ (version "1.0")
(source (origin
(method url-fetch)
(uri (cran-uri "markdown" version))
(sha256
(base32
- "08xzs4bcf12jxp0276m6xqvq8kcgg5qp6fxrvsz6r9x73jjccs1h"))))
+ "19nrz0ba1yd5kicd65crkkz2r3kialm2hm6zdkp495l2s5r80b8p"))))
(build-system r-build-system)
;; Skip check phase because the tests require the r-knitr package to be
;; installed. This prevents installation failures. Knitr normally
(define-public r-knitr
(package
(name "r-knitr")
- (version "1.22")
+ (version "1.23")
(source (origin
(method url-fetch)
(uri (cran-uri "knitr" version))
(sha256
(base32
- "1iks80g1cj25rvgyf0y2jc2pmfvsq4sbgdp788w9016bk71wzdcs"))))
+ "16ba4258c915xydhniw4cw7fvv1vp4cnwd1w49ykx7zw00rznfq6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-evaluate" ,r-evaluate)
(define-public r-rlang
(package
(name "r-rlang")
- (version "0.3.4")
+ (version "0.4.0")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "1pks7d2xavzgaxqrnk3f79qsmv4wqv93f8991jv93pnb1mxpyijf"))))
+ "038mmbmklw17ncgz53vrdx2506c1jj6di3y165bbx2sl2yia8j4p"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
(define-public r-tibble
(package
(name "r-tibble")
- (version "2.1.1")
+ (version "2.1.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "tibble" version))
(sha256
(base32
- "111jl0hdjhh7hkydxvsr5l19gb0ylxq7xrkc28awnc9pzglpgis5"))))
+ "06jfayiip8j8ibdhw3fvxn4n8aqbqhwanrszpzlsf92xdfgfm34s"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
(define-public r-dplyr
(package
(name "r-dplyr")
- (version "0.8.0.1")
+ (version "0.8.1")
(source (origin
(method url-fetch)
(uri (cran-uri "dplyr" version))
(sha256
(base32
- "0p6dbjrgqyklc67g53v1a5xdp9x2jpcsdcs6v3djf9d366fqh244"))))
+ "1nw12hzk1jcac5879nfmf1yp98jpb3i59qkb8sfpk2cd6zqgfgjz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
(define-public r-dbplyr
(package
(name "r-dbplyr")
- (version "1.4.0")
+ (version "1.4.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "dbplyr" version))
(sha256
(base32
- "0f4gfkzl07gfwihyc747kdnzxahaw2g28wli4jmikrvczldvjqjx"))))
+ "1q2dflr88s5a1amzfld3087q422vf70052qn84zyd8895kdg10xp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
(define-public r-batchjobs
(package
(name "r-batchjobs")
- (version "1.7")
+ (version "1.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "BatchJobs" version))
(sha256
(base32
- "035658marnw57p4f38g99rwmvmb6hpbq0fhlxp3qbw22zfnnkvs9"))))
+ "1zz4sspj596pijxlz321g0jy2rg9ki83j6fihbwisjwr66p2vk1m"))))
(properties `((upstream-name . "BatchJobs")))
(build-system r-build-system)
(propagated-inputs
(define-public r-openssl
(package
(name "r-openssl")
- (version "1.3")
+ (version "1.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "openssl" version))
(sha256
(base32
- "1gx4mk7js1irzkql5rgk48ja9c6mm28ccxz483ngbhdd57az90qw"))))
+ "0mh4xwb9wnn5j2n1zzmjldqjqv2nn4wdidiixxciaqrqsi0l9834"))))
(build-system r-build-system)
(inputs
`(("libressl" ,libressl)))
(define-public r-plotrix
(package
(name "r-plotrix")
- (version "3.7-5")
+ (version "3.7-6")
(source (origin
(method url-fetch)
(uri (cran-uri "plotrix" version))
(sha256
(base32
- "0k6ivryac1k81z2dijjds376a9jxwk8rf5g48snj67cnjffkybxj"))))
+ "0ijfjlr7ls5hvfyzdmwab6bx0w3nvp0c8fgynj4355cj8mbzgmc3"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/plotrix")
(synopsis "Various plotting functions")
(define-public r-rcpparmadillo
(package
(name "r-rcpparmadillo")
- (version "0.9.400.2.0")
+ (version "0.9.500.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "RcppArmadillo" version))
(sha256
(base32
- "01bf8jdlzndmqqzw16lpwx7zz1hkykd001dxxd9rzrgmn86f2xvs"))))
+ "1lyvpb7n54ijlqns29qiixqr39334knf67cnixvlic58945glrhv"))))
(properties `((upstream-name . "RcppArmadillo")))
(build-system r-build-system)
;; All needed for vignettes
(define-public r-rmarkdown
(package
(name "r-rmarkdown")
- (version "1.12")
+ (version "1.13")
(source
(origin
(method url-fetch)
(uri (cran-uri "rmarkdown" version))
(sha256
(base32
- "0milpdaf4nd36kq6sci9wc5dhwswl4w9c9fychfbppgjsgfp6kfv"))))
+ "1vv3b8nlw8ra19492rjg3na42lwh3xr5a2jy2ia81fvvs846pywn"))))
(properties `((upstream-name . "rmarkdown")))
(build-system r-build-system)
(propagated-inputs
("r-mime" ,r-mime)
("r-stringr" ,r-stringr)
("r-tinytex" ,r-tinytex)
+ ("r-xfun" ,r-xfun)
("r-yaml" ,r-yaml)
("ghc-pandoc" ,ghc-pandoc)))
(home-page "http://rmarkdown.rstudio.com")
(define-public r-xml
(package
(name "r-xml")
- (version "3.98-1.19")
+ (version "3.98-1.20")
(source (origin
(method url-fetch)
(uri (cran-uri "XML" version))
(sha256
(base32
- "1axyfa56q45x7z4zd56aasdn9hz9niv2vv5qm1zp9i94vyic9cc1"))))
+ "0n28m8iz1wfgixr7fjswl238c5w9kggsrw0c8hdzp859dqvqdbs6"))))
(properties
`((upstream-name . "XML")))
(build-system r-build-system)
(define-public r-segmented
(package
(name "r-segmented")
- (version "0.5-3.0")
+ (version "1.0-0")
(source
(origin
(method url-fetch)
(uri (cran-uri "segmented" version))
(sha256
(base32
- "0nrik5fyq59hwiwjcpbi4p5yfavgfjq6wyrynhkrbm4k6v1g1wlq"))))
+ "1igsfkffpa60zn6j45lhw1zgr5pz6rjknv2f3sylnx5l9fdwibgf"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/segmented")
(synopsis "Regression models with breakpoints estimation")
(define-public r-dt
(package
(name "r-dt")
- (version "0.6")
+ (version "0.7")
(source (origin
(method url-fetch)
(uri (cran-uri "DT" version))
(sha256
(base32
- "05kr88yshq6siarp5q7aapvsr63vx3p0aqablwgifn8m2sfqxmif"))))
+ "0b6ywgzk9b35y5f69zwfz3vv7qwqqj3xsmy0xymf7nfcvrqg3qqx"))))
(properties
`((upstream-name . "DT")))
(build-system r-build-system)
(define-public r-glmnet
(package
(name "r-glmnet")
- (version "2.0-16")
+ (version "2.0-18")
(source
(origin
(method url-fetch)
(uri (cran-uri "glmnet" version))
(sha256
(base32
- "1brr51z1fzbpyj6myyir4g6dhbp6xwl7nx4xnvrjarnf5y0csk55"))))
+ "0sr5akaiaab1sdh9c8gfmc4kp9b4vqhd90d9ig0rqpqhp3bykp78"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
(define-public r-e1071
(package
(name "r-e1071")
- (version "1.7-1")
+ (version "1.7-2")
(source
(origin
(method url-fetch)
(uri (cran-uri "e1071" version))
(sha256
(base32
- "1zlxz3da216q6v6r4ff60il121xwz7g7m639vzdwglhw3jjh8psw"))))
+ "0lipj692rjjw8rrhqh2k9i5dh8y2sjrw9q53rwm32irhx2f2j73j"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)))
(define-public r-r-utils
(package
(name "r-r-utils")
- (version "2.8.0")
+ (version "2.9.0")
(source (origin
(method url-fetch)
(uri (cran-uri "R.utils" version))
(sha256
(base32
- "1jaarld1jgpzh18kh9g3rlzcrk51vdgn2n1d1y28szzxlz94vifg"))))
+ "1w4zn2db15bggfnh64fbyi2z2sj47rcd4xn53b28dsnkamdcramj"))))
(properties `((upstream-name . "R.utils")))
(build-system r-build-system)
(propagated-inputs
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
- (version "1.0-10")
+ (version "1.0-11")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
- "04md0wmqgif24g0a4hx19ifn4kk8nx10986vf2d9vascig6ikpri"))))
+ "0lkjph661blc1nwfzg9w48a60wvj6ffh4zjwlisvracsx4nn2883"))))
(build-system r-build-system)
(inputs
`(("gfortran" ,gfortran)))
(define-public r-hexbin
(package
(name "r-hexbin")
- (version "1.27.2")
+ (version "1.27.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "hexbin" version))
(sha256
(base32
- "0lpfl0015lg5x7lvv9dr302bca22c7fs91pnd896ypgpzqg7pm26"))))
+ "14f181lw6sj5xhfxbrpyyinsjfl0nzqilq6z80lgrhj2cnkj593y"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-zoo
(package
(name "r-zoo")
- (version "1.8-5")
+ (version "1.8-6")
(source (origin
(method url-fetch)
(uri (cran-uri "zoo" version))
(sha256
(base32
- "09p8gmd5ifz80ahnhiianarsr5xx3nz76jzp90d7v3fjffcrcww7"))))
+ "1k1pmzr9nfwbxq1xf0jzn3nawv4sgnkxkgzxnm1i887jcbrs85r2"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-ggthemes
(package
(name "r-ggthemes")
- (version "4.1.1")
+ (version "4.2.0")
(source (origin
(method url-fetch)
(uri (cran-uri "ggthemes" version))
(sha256
(base32
- "092hks6bxi6al8nclgswnzfmx5wp6n3qf63aqiajca7dx8w8n0m2"))))
+ "0rrkzfggc1nlda1w1lbqdycx6nawxbkac1szhvkwrqlzh6agxcsv"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ggplot2" ,r-ggplot2)
(define-public r-statmod
(package
(name "r-statmod")
- (version "1.4.30")
+ (version "1.4.32")
(source (origin
(method url-fetch)
(uri (cran-uri "statmod" version))
(sha256
(base32
- "07v4x8af60alcw6vbiwf5fp25bhra61kvxz9kqx64lszm0i1fb4x"))))
+ "083yyp84xj85zg4bhz7i90bqzl3p6155ch4abwsfc9k1lv7s2rrg"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/statmod")
(native-inputs
(define-public r-mclust
(package
(name "r-mclust")
- (version "5.4.3")
+ (version "5.4.4")
(source
(origin
(method url-fetch)
(uri (cran-uri "mclust" version))
(sha256
(base32
- "18x5ych9zi3y87rxi4pf6f23sl2918dp9xxpw1pqa7p7drw817p6"))))
+ "039ymr57bq5327gypizw0v2qb81j6bkqhjdh8yj23qa5sh51phyc"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(define-public r-prabclus
(package
(name "r-prabclus")
- (version "2.2-7")
+ (version "2.3-1")
(source
(origin
(method url-fetch)
(uri (cran-uri "prabclus" version))
(sha256
(base32
- "0h2nml8ri27mhfs2p6ngb6kfd6lyq30sc6813yybpskkrb6gs1pb"))))
+ "1h5k13w8mmmdy74l145zh64f339wy78z1nlg8xr3zg23gmv98cpg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
(define-public r-robustbase
(package
(name "r-robustbase")
- (version "0.93-4")
+ (version "0.93-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "robustbase" version))
(sha256
(base32
- "1q56y0iqp7qhavm4xnpzhs64q7l893y7yiq3b20fllpghka077pa"))))
+ "0mkzbsjl5nihyj7mzks14p6kr3spp44xvygjz4ran11gspdn9rdx"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(home-page "http://robustbase.r-forge.r-project.org/")
(synopsis "Basic robust statistics")
(description
- "This packages allows to analyze data with robust methods such as
+ "This package allows to analyze data with robust methods such as
regression methodology including model selections and multivariate statistics.")
(license license:gpl2+)))
(define-public r-fpc
(package
(name "r-fpc")
- (version "2.1-11.2")
+ (version "2.2-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "fpc" version))
(sha256
(base32
- "0wjjp9xn283acfg6cm1wa6fsi7pf0z97227hrnlpmprks3mbj8kr"))))
+ "1dy3pla4jjgs46izqg2kxajlxr80sbr9896jbzb1qszrdx7af041"))))
(build-system r-build-system)
(propagated-inputs
`(("r-class" ,r-class)
("r-kernlab" ,r-kernlab)
("r-mass" ,r-mass)
("r-mclust" ,r-mclust)
- ("r-mvtnorm" ,r-mvtnorm)
("r-prabclus" ,r-prabclus)
- ("r-robustbase" ,r-robustbase)
- ("r-trimcluster" ,r-trimcluster)))
+ ("r-robustbase" ,r-robustbase)))
(home-page "https://cran.r-project.org/web/packages/fpc")
(synopsis "Flexible procedures for clustering")
(description
(define-public r-quantreg
(package
(name "r-quantreg")
- (version "5.38")
+ (version "5.41")
(source
(origin
(method url-fetch)
(uri (cran-uri "quantreg" version))
(sha256
(base32
- "1vvvnk291f0dccg04l3nsnk585gq75sk0b2vdbrqv3lczvv18nw1"))))
+ "110ax3ngn6i94h7iw7ha67kfsmj94hycp7lk62nmyvkp34vpfykh"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(define-public r-car
(package
(name "r-car")
- (version "3.0-2")
+ (version "3.0-3")
(source
(origin
(method url-fetch)
(uri (cran-uri "car" version))
(sha256
(base32
- "0l3wyc9ia0ypcbap2p39slazfpbl84mjzydqvpsywrzdiyxajnfz"))))
+ "0vy3g3bjljd2al8xb9qr45f98is7yppc9jilqn7b6zvf5yqpr07s"))))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
(define-public r-numderiv
(package
(name "r-numderiv")
- (version "2016.8-1")
+ (version "2016.8-1.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "numDeriv" version))
(sha256
(base32
- "07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"))))
+ "0idk02pqkziik932bd8k72d1q775g1is3m4bc861pcxfz6gx3i6q"))))
(properties `((upstream-name . "numDeriv")))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/numDeriv")
(define-public r-sn
(package
(name "r-sn")
- (version "1.5-3")
+ (version "1.5-4")
(source
(origin
(method url-fetch)
(uri (cran-uri "sn" version))
(sha256
(base32
- "10via4lg0vx9pzq350vwhz5wv1dhzxr2l3r6jq99nk37vmyvj8fc"))))
+ "0x46gxkplxbnhaqbpiav1r4xlv4ib7n57kxmca7scqwj22y7wrs6"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mnormt" ,r-mnormt)
(home-page "http://azzalini.stat.unipd.it/SN")
(synopsis "The skew-normal and skew-t distributions")
(description
- "This packages provides functionalities to build and manipulate
+ "This package provides functionalities to build and manipulate
probability distributions of the skew-normal family and some related
ones, notably the skew-t family, and provides related statistical
methods for data fitting and diagnostics, in the univariate and the