;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 David Thompson <davet@gnu.org>
-;;; Copyright © 2015, 2017, 2019, 2020 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2017, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
;;; Copyright © 2016, 2017, 2018, 2019 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Christopher Allan Webber <cwebber@dustycloud.org>
;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu>
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2019, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr>
;;; Copyright © 2019 Alexandros Theodotou <alex@zrythm.org>
;;; Copyright © 2019 Brett Gilio <brettg@gnu.org>
+;;; Copyright © 2020 Giacomo Leidi <goodoldpaul@autistici.org>
+;;; Copyright © 2021 Eric Bavier <bavier@posteo.net>
+;;; Copyright © 2021 Vinicius Monego <monego@posteo.net>
+;;; Copyright © 2021 Hugo Lecomte <hugo.lecomte@inria.fr>
;;;
;;; This file is part of GNU Guix.
;;;
#:use-module (gnu packages graphviz)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
+ #:use-module (gnu packages python-build)
+ #:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages time))
(define-public python-sphinx
(package
(name "python-sphinx")
- (version "3.2.1")
+ (version "3.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Sphinx" version))
(sha256
(base32
- "1s70hxhddzf656kmj01lws4cbywgsinbg8750r9ilf7s2sdns79j"))))
+ "0023vc2i29pjxmvdqbz1wdbi7gbj56y1br1b2z8h8wa44li5k38y"))))
(build-system python-build-system)
(arguments
`(#:phases
(properties `((python2-variant . ,(delay python2-sphinx))))))
;; Sphinx 2 does not support Python 2, so we stick with this older version here.
-;; Remove this package once python2-pbcore no longer requires it.
(define-public python2-sphinx
(let ((base (package-with-python2 (strip-python2-variant python-sphinx))))
(package
`(modify-phases ,phases
(add-before 'check 'disable-broken-tests
(lambda _
- ;; These tests are broken when using Python2:
- ;; <https://github.com/sphinx-doc/sphinx/issues/4710>.
- (for-each delete-file '("tests/test_api_translator.py"
- "tests/test_setup_command.py"))
- #t))))))
+ (for-each delete-file
+ ;; These tests are broken when using Python2:
+ ;; <https://github.com/sphinx-doc/sphinx/issues/4710>.
+ '("tests/test_api_translator.py"
+ "tests/test_setup_command.py"
+ ;; This one fails for unknown reasons.
+ "tests/test_correct_year.py"))))))))
(native-inputs `(("python2-mock" ,python2-mock)
("python2-enum34" ,python2-enum34)
,@(package-native-inputs base)))
;; Sphinx 2 has some dependencies that do not support Python 2, so
;; we keep our own propagated-inputs here instead of inheriting.
- (propagated-inputs `(("python2-pytz" ,python2-pytz)
- ("python2-typing" ,python2-typing)
- ("python2-imagesize" ,python2-imagesize)
- ("python2-sphinx-alabaster-theme"
- ,python2-sphinx-alabaster-theme)
- ("python2-babel" ,python2-babel-2.6)
- ("python2-snowballstemmer" ,python2-snowballstemmer)
- ("python2-docutils" ,python2-docutils-0.14)
- ("python2-jinja2" ,python2-jinja2)
- ("python2-packaging" ,python2-packaging)
- ("python2-pygments" ,python2-pygments)
- ("python2-requests" ,python2-requests)
- ("python2-six" ,python2-six)
- ("python2-sphinxcontrib-websupport"
- ,python2-sphinxcontrib-websupport))))))
+ (propagated-inputs
+ `(("python2-pytz" ,python2-pytz)
+ ("python2-typing" ,python2-typing)
+ ("python2-imagesize" ,python2-imagesize)
+ ("python2-sphinx-alabaster-theme" ,python2-sphinx-alabaster-theme)
+ ("python2-babel" ,python2-babel)
+ ("python2-snowballstemmer" ,python2-snowballstemmer)
+ ("python2-docutils" ,python2-docutils-0.14)
+ ("python2-jinja2" ,python2-jinja2)
+ ("python2-packaging" ,python2-packaging)
+ ("python2-pygments" ,python2-pygments)
+ ("python2-requests" ,python2-requests)
+ ("python2-six" ,python2-six)
+ ("python2-sphinxcontrib-websupport" ,python2-sphinxcontrib-websupport))))))
(define-public python-sphinxcontrib-applehelp
(package
@url{Devhelp,https://wiki.gnome.org/Apps/Devhelp} documents.")
(license license:bsd-2)))
+(define-public python-sphinxcontrib-github-alt
+ (package
+ (name "python-sphinxcontrib-github-alt")
+ (version "1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sphinxcontrib_github_alt" version))
+ (sha256
+ (base32
+ "1x9af78vamjjcdrrhiah3wg613jv7gm8yh9vvqfrmf4vam6mimyg"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-docutils" ,python-docutils)
+ ("python-sphinx" ,python-sphinx)))
+ (home-page "https://github.com/jupyter/sphinxcontrib_github_alt")
+ (synopsis "Link to GitHub pages from Sphinx docs")
+ (description
+ "This package lets you link to GitHub issues, pull requests, commits and
+users from Sphinx docs.")
+ (license license:bsd-2)))
+
(define-public python-sphinxcontrib-htmlhelp
(package
(name "python-sphinxcontrib-htmlhelp")
(define-public python-sphinx-gallery
(package
(name "python-sphinx-gallery")
- (version "0.1.13")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/sphinx-gallery/sphinx-gallery")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "14nbqh9krx2l2y2ylbln6l6w8iak3wac1lngvaf278y1cx7685kg"))))
+ (version "0.9.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sphinx-gallery" version))
+ (sha256
+ (base32 "14zyhr7m92nafhhnzfvnbgkf5m91krd9mjyi24zn59bjq6zyr8hl"))))
(build-system python-build-system)
(arguments
- ;; FIXME: Tests attempt to download <https://docs.python.org/3/objects.inv>,
- ;; <https://docs.scipy.org/doc/numpy/objects.inv>, and
- ;; <https://matplotlib.org/objects.inv>.
- `(#:tests? #f))
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'check 'writable-files-for-tests
+ (lambda _
+ (for-each make-file-writable (find-files "."))))
+ (replace 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (add-installed-pythonpath inputs outputs)
+ (invoke "python" "-m" "pytest" "--pyargs" "sphinx_gallery" "-k"
+ (string-append
+ ;; These tests require online data.
+ "not test_embed_code_links_get_data"
+ " and not test_run_sphinx"
+ ;; AssertionError.
+ " and not test_embed_links_and_styles"))))))))
(native-inputs
- `(("python-pytest-runner" ,python-pytest-runner)))
- (home-page "https://sphinx-gallery.github.io/")
+ `(("python-joblib" ,python-joblib)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-numpy" ,python-numpy)
+ ("python-pillow" ,python-pillow)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-sphinx" ,python-sphinx)))
+ (home-page "https://sphinx-gallery.github.io/stable/index.html")
(synopsis "Generate an examples gallery automatically")
(description
"@code{sphinx_gallery} is a Sphinx extension that builds an HTML version
from any set of Python scripts and puts it into an examples gallery.")
(license license:bsd-3)))
-(define-public python2-sphinx-gallery
- (package-with-python2 python-sphinx-gallery))
-
(define-public python-sphinx-me
(package
(name "python-sphinx-me")
(define-public python2-sphinx-alabaster-theme
(package-with-python2 python-sphinx-alabaster-theme))
+(define-public python-sphinx-argparse
+ (package
+ (name "python-sphinx-argparse")
+ (version "0.2.5")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sphinx-argparse" version))
+ (sha256
+ (base32 "05wc8f5hb3jsg2vh2jf7jsyan8d4i09ifrz2c8fp6f7x1zw9iav0"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-sphinx" ,python-sphinx)))
+ (native-inputs
+ `(("python-commonmark" ,python-commonmark)
+ ("python-pytest" ,python-pytest)
+ ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme)))
+ (home-page "https://github.com/ribozz/sphinx-argparse")
+ (synopsis "Sphinx extension for documenting argparse commands and options")
+ (description
+ "This package is a sphinx extension that automatically documents
+argparse commands and options")
+ (license license:expat)))
+
(define-public python-sphinx-cloud-sptheme
(package
(name "python-sphinx-cloud-sptheme")
(define-public python-breathe
(package
(name "python-breathe")
- (version "4.22.1")
+ (version "4.30.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "breathe" version))
(sha256
(base32
- "0snk538xv60z4vfhl3f7v5g658za7257hddkg07cknkn33k6cjvf"))))
+ "055h95fkdld7s49878fqjx1nri1drj1czc184vrb7i60mf2yqg9n"))))
(build-system python-build-system)
(propagated-inputs
`(("python-docutils" ,python-docutils)
- ("python-six" ,python-six)
("python-sphinx" ,python-sphinx)))
(home-page "https://github.com/michaeljones/breathe")
(synopsis "ReStructuredText and Sphinx bridge to Doxygen")
(define-public python-sphinx-intl
(package
(name "python-sphinx-intl")
- (version "2.0.0")
+ (version "2.0.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "sphinx-intl" version))
(sha256
- (base32
- "0zbf1bh23b3kza8bnjykmv2k21xmmr4gamhi3lnicnr6ypnrphr5"))))
+ (base32 "1d1q0sanjp4nkfvhsxi75zf3xjyyi8nzxvl3v7l0jy9ld70nwnmj"))))
(build-system python-build-system)
(propagated-inputs
`(("python-sphinx" ,python-sphinx)
documentation when a change is detected. It also includes a livereload
enabled web server.")
(license license:expat)))
+
+(define-public python-sphinx-autodoc-typehints
+ (package
+ (name "python-sphinx-autodoc-typehints")
+ (version "1.11.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sphinx-autodoc-typehints" version))
+ (sha256
+ (base32
+ "086v9mg21pvfx0lfqjx2xf36hnzrsripfg345xi59f7xwb9scjr4"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-setuptools-scm" ,python-setuptools-scm)
+ ("python-sphinx" ,python-sphinx)))
+ (native-inputs
+ `(("python-dataclasses" ,python-dataclasses)
+ ("python-pytest" ,python-pytest)
+ ("python-sphinx" ,python-sphinx)
+ ("python-sphobjinv" ,python-sphobjinv)
+ ("python-typing-extensions" ,python-typing-extensions)))
+ (home-page "https://pypi.org/project/sphinx-autodoc-typehints/")
+ (synopsis "Type hints for the Sphinx autodoc extension")
+ (description "This extension allows you to use Python 3 annotations for
+documenting acceptable argument types and return value types of functions.")
+ (license license:expat)))
+
+(define-public python-nbsphinx
+ (package
+ (name "python-nbsphinx")
+ (version "0.7.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "nbsphinx" version))
+ (sha256
+ (base32
+ "0j56bxdj08vn3q1804qwb1ywhga1mdg1awgm7i64wfpfwi8df2zm"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-docutils" ,python-docutils)
+ ("python-jinja2" ,python-jinja2)
+ ("python-nbconvert" ,python-nbconvert)
+ ("python-nbformat" ,python-nbformat)
+ ("python-sphinx" ,python-sphinx)
+ ("python-traitlets" ,python-traitlets)))
+ (home-page "https://nbsphinx.readthedocs.io/")
+ (synopsis "Jupyter Notebook Tools for Sphinx")
+ (description "@code{python-nbsphinx} is a Sphinx extension that
+provides a source parser for @code{*.ipynb} files. Custom Sphinx
+directives are used to show Jupyter Notebook code cells (and of course
+their results) in both HTML and LaTeX output. Un-evaluated notebooks
+- i.e. notebooks without stored output cells - will be automatically
+executed during the Sphinx build process.")
+ (license license:expat)))
+
+(define-public python-sphobjinv
+ (package
+ (name "python-sphobjinv")
+ (version "2.0.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "sphobjinv" version))
+ (sha256
+ (base32
+ "126lgm54c94ay3fci512ap4l607gak90pbz0fk98syxvj5izrrzx"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-attrs" ,python-attrs)
+ ("python-certifi" ,python-certifi)
+ ("python-fuzzywuzzy" ,python-fuzzywuzzy)
+ ("python-jsonschema" ,python-jsonschema)
+ ("python-levenshtein" ,python-levenshtein)))
+ (home-page "https://github.com/bskinn/sphobjinv")
+ (synopsis "Sphinx cross-reference tool")
+ (description "Sphinx objects.inv inspection/manipulation tool.")
+ (license license:expat)))
+
+(define-public python-jupyter-sphinx
+ (package
+ (name "python-jupyter-sphinx")
+ (version "0.3.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "jupyter_sphinx" version))
+ (sha256
+ (base32
+ "1wma60787m2451nn4bc4jw7bzqksplplb84wqxm34iaw70499z1p"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-ipython" ,python-ipython)
+ ("python-ipywidgets" ,python-ipywidgets)
+ ("python-nbconvert" ,python-nbconvert)
+ ("python-nbformat" ,python-nbformat)))
+ (native-inputs
+ `(("python-sphinx" ,python-sphinx)))
+ (home-page "https://github.com/jupyter/jupyter-sphinx/")
+ (synopsis "Jupyter Sphinx Extensions")
+ (description
+ "Jupyter-sphinx is a Sphinx extension that executes embedded code in a
+Jupyter kernel, and embeds outputs of that code in the document. It has
+support for rich output such as images, LaTeX math and even JavaScript
+widgets, and supports thebelab for live code execution with minimal effort.")
+ (license license:bsd-3)))
HCoop / jackhill / guix / guix.git / blobdiff