;; replace them.
(with-directory-excursion "inst/www/shared"
(replace-file "strftime/strftime-min.js"
- (string-append (assoc-ref inputs "js-strftime")
- "/share/javascript/strftime.min.js"))
+ (search-input-file inputs
+ "/share/javascript/strftime.min.js"))
(replace-file "highlight/highlight.pack.js"
- (string-append (assoc-ref inputs "js-highlight")
- "/share/javascript/highlight.min.js"))
+ (search-input-file inputs
+ "/share/javascript/highlight.min.js"))
(replace-file "datatables/js/jquery.dataTables.min.js"
- (string-append (assoc-ref inputs "js-datatables")
- "/share/javascript/jquery.dataTables.min.js"))
+ (search-input-file inputs
+ "/share/javascript/jquery.dataTables.min.js"))
(replace-file "selectize/js/selectize.min.js"
- (string-append (assoc-ref inputs "js-selectize")
- "/share/javascript/selectize.min.js"))
+ (search-input-file inputs
+ "/share/javascript/selectize.min.js"))
(for-each (match-lambda
((source . target)
(minify source #:target target)))
(add-after 'unpack 'replace-minified-javascript
(lambda* (#:key inputs #:allow-other-keys)
(with-directory-excursion "inst/www/jsTree-3.3.7/"
- (symlink (string-append (assoc-ref inputs "js-requirejs")
- "/share/javascript/require.min.js")
+ (symlink (search-input-file inputs
+ "/share/javascript/require.min.js")
"libs/require.js")
(call-with-values
(lambda ()
ggplot2 package.")
(license license:gpl3)))
+(define-public r-cvauc
+ (package
+ (name "r-cvauc")
+ (version "1.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "cvAUC" version))
+ (sha256
+ (base32
+ "13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"))))
+ (properties `((upstream-name . "cvAUC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-rocr" ,r-rocr)))
+ (home-page "https://github.com/ledell/cvAUC")
+ (synopsis "Cross-validated area under the ROC curve confidence intervals")
+ (description
+ "This package contains various tools for working with and evaluating
+cross-validated area under the ROC curve (AUC) estimators. The primary
+functions of the package are @code{ci.cvAUC} and @code{ci.pooled.cvAUC}, which
+report cross-validated AUC and compute confidence intervals for
+cross-validated AUC estimates based on influence curves for i.i.d. and pooled
+repeated measures data, respectively.")
+ (license license:asl2.0)))
+
+(define-public r-gam
+ (package
+ (name "r-gam")
+ (version "1.20")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gam" version))
+ (sha256
+ (base32
+ "1zhy2fp7pxac8xp3z3hndhprj4s5gx3305b627vc78bal1ml3swi"))))
+ (properties `((upstream-name . "gam")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-foreach" ,r-foreach)))
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (home-page "https://cran.r-project.org/package=gam")
+ (synopsis "Generalized additive models")
+ (description
+ "This package provides functions for fitting and working with generalized
+additive models, as described in chapter 7 of \"Statistical Models in
+S\" (Chambers and Hastie (eds), 1991), and \"Generalized Additive
+Models\" (Hastie and Tibshirani, 1990).")
+ (license license:gpl2)))
+
+(define-public r-superlearner
+ (package
+ (name "r-superlearner")
+ (version "2.0-28")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "SuperLearner" version))
+ (sha256
+ (base32
+ "00any24msgflyagy87nznpfjz5g9v15frqda6c679wa8plx26hjz"))))
+ (properties `((upstream-name . "SuperLearner")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cvauc" ,r-cvauc)
+ ("r-gam" ,r-gam)
+ ("r-nnls" ,r-nnls)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/ecpolley/SuperLearner")
+ (synopsis "Super learner prediction")
+ (description
+ "This package implements the super learner prediction method and contains
+a library of prediction algorithms to be used in the super learner.")
+ (license license:gpl3)))
+
+(define-public r-drtmle
+ (package
+ (name "r-drtmle")
+ (version "1.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "drtmle" version))
+ (sha256
+ (base32
+ "08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"))))
+ (properties `((upstream-name . "drtmle")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-future-apply" ,r-future-apply)
+ ("r-np" ,r-np)
+ ("r-superlearner" ,r-superlearner)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/benkeser/drtmle")
+ (synopsis "Doubly-robust nonparametric estimation and inference")
+ (description
+ "This package implements targeted minimum loss-based estimators of
+counterfactual means and causal effects that are doubly-robust with respect
+both to consistency and asymptotic normality.")
+ (license license:expat)))
+
+(define-public r-dofuture
+ (package
+ (name "r-dofuture")
+ (version "0.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "doFuture" version))
+ (sha256
+ (base32
+ "1hqzdlgcrc5l6xjwdylsc9iiysi2wx8k1j1vmw3wryj26057c9y4"))))
+ (properties `((upstream-name . "doFuture")))
+ (build-system r-build-system)
+ (arguments
+ '(#:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'set-HOME
+ (lambda _ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs
+ `(("r-foreach" ,r-foreach)
+ ("r-future" ,r-future)
+ ("r-globals" ,r-globals)
+ ("r-iterators" ,r-iterators)))
+ (native-inputs
+ `(("r-r-rsp" ,r-r-rsp))) ; vignette builder
+ (home-page "https://github.com/HenrikBengtsson/doFuture")
+ (synopsis "Foreach parallel adapter using the future API")
+ (description
+ "This package provides a @code{%dopar%} adapter such that any type of
+futures can be used as backends for the @code{foreach} framework.")
+ (license license:lgpl2.1+)))
+
+(define-public r-superheat
+ (package
+ (name "r-superheat")
+ (version "0.1.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "superheat" version))
+ (sha256
+ (base32
+ "01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"))))
+ (properties `((upstream-name . "superheat")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-dplyr" ,r-dplyr)
+ ("r-ggdendro" ,r-ggdendro)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gtable" ,r-gtable)
+ ("r-magrittr" ,r-magrittr)
+ ("r-plyr" ,r-plyr)
+ ("r-scales" ,r-scales)))
+ (home-page "https://cran.r-project.org/package=superheat")
+ (synopsis "Graphical tool for exploring complex datasets using heatmaps")
+ (description
+ "This package provides a system for generating extendable and
+customizable heatmaps for exploring complex datasets, including big data and
+data with multiple data types.")
+ (license license:cc0)))
+
+(define-public r-qualv
+ (package
+ (name "r-qualv")
+ (version "0.3-3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "qualV" version))
+ (sha256
+ (base32
+ "1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx"))))
+ (properties `((upstream-name . "qualV")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-kernsmooth" ,r-kernsmooth)))
+ (home-page "http://qualV.R-Forge.R-Project.org/")
+ (synopsis "Qualitative Validation Methods")
+ (description
+ "This package provides qualitative methods for the validation of dynamic
+models. It contains
+
+@enumerate
+@item an orthogonal set of deviance measures for absolute, relative and
+ ordinal scale and
+@item approaches accounting for time shifts.
+@end enumerate
+
+The first approach transforms time to take time delays and speed differences
+into account. The second divides the time series into interval units
+according to their main features and finds the @dfn{longest common
+subsequence} (LCS) using a dynamic programming algorithm.")
+ (license license:gpl2+)))
+
(define-public r-mosaiccore
(package
(name "r-mosaiccore")
(lambda* (#:key inputs #:allow-other-keys)
(setenv "TZ" "UTC+1")
(setenv "TZDIR"
- (string-append (assoc-ref inputs "tzdata")
- "/share/zoneinfo"))
- #t)))))
+ (search-input-directory inputs
+ "share/zoneinfo")))))))
(native-inputs
`(("tzdata" ,tzdata-for-tests)
("pandoc" ,pandoc)
HCoop / jackhill / guix / guix.git / blobdiff