;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2019 Tanguy Le Carrour <tanguy@bioneland.org>
;;; Copyright © 2019 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2020 Riku Viitanen <riku.viitanen@protonmail.com>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;; Copyright © 2020 sirgazil <sirgazil@zoho.com>
;;;
(propagated-inputs `(("numpy" ,python-numpy)))
(inputs
`(("hdf4" ,hdf4)
- ("libjpeg" ,libjpeg)
+ ("libjpeg" ,libjpeg-turbo)
("zlib" ,zlib)))
(arguments
`(#:phases
(define-public python-six
(package
(name "python-six")
- (version "1.12.0")
+ (version "1.14.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "six" version))
(sha256
(base32
- "0wxs1q74v07ssjywbbm7x6h5v9qx209ld2yfsif4060sxi0h2sni"))))
+ "02lw67hprv57hyg3cfy02y3ixjk3nzwc0dx3c4ynlvkfwkfdnsr3"))))
(build-system python-build-system)
(arguments
`(#:phases
(lambda _
(invoke "py.test" "-v"))))))
(native-inputs
- `(("python-py" ,python-py)
- ("python-pytest" ,python-pytest-bootstrap)))
+ `(("python-pytest" ,python-pytest-bootstrap)))
(home-page "https://pypi.org/project/six/")
(synopsis "Python 2 and 3 compatibility utilities")
(description
(define-public python-py
(package
(name "python-py")
- (version "1.8.0")
+ (version "1.8.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "py" version))
(sha256
(base32
- "0lsy1gajva083pzc7csj1cvbmminb7b4l6a0prdzyb3fd829nqyw"))))
+ "1ajjazg3913n0sp3vjyva9c2qh5anx8ziryng935f89604a0h9sy"))))
(build-system python-build-system)
(arguments
;; FIXME: "ImportError: 'test' module incorrectly imported from
(define-public python-pyparsing
(package
(name "python-pyparsing")
- (version "2.3.1")
+ (version "2.4.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyparsing" version))
(sha256
- (base32 "0yk6xl885b91dmlhlsap7x78hk2rdr879fln9anbq6k4ca42djb6"))))
+ (base32 "17wn5zlijc9m9zj26gy3f541y7smpj8rfhl51d025c2gm210b0sc"))))
(build-system python-build-system)
(outputs '("out" "doc"))
(arguments
(inputs
`(("freetype" ,freetype)
("lcms" ,lcms)
- ("libjpeg" ,libjpeg)
+ ("libjpeg" ,libjpeg-turbo)
("libtiff" ,libtiff)
("libwebp" ,libwebp)
("openjpeg" ,openjpeg)
(define-public python-setuptools-scm
(package
(name "python-setuptools-scm")
- (version "3.2.0")
+ (version "3.4.3")
(source (origin
(method url-fetch)
(uri (pypi-uri "setuptools_scm" version))
(sha256
(base32
- "0n3knn3p1sqlx31k2lahn7z9bacvlv8nhlfidj77vz50bxqlgasj"))))
+ "083k93wi7mrmp1cn28hcbnr6sivbgls0y7zz2m5qzn1wg04a3f16"))))
(build-system python-build-system)
(home-page "https://github.com/pypa/setuptools_scm/")
(synopsis "Manage Python package versions in SCM metadata")
them as the version argument or in a SCM managed file.")
(license license:expat)))
-;; Needed by python-lazy-object-proxy, remove on next update cycle.
-(define-public python-setuptools-scm-3.3
- (package
- (inherit python-setuptools-scm)
- (version "3.3.3")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "setuptools_scm" version))
- (sha256
- (base32
- "19cyndx23xmpbhz4qrwmfwsmnnaczd0dw7qg977ksq2dbvxy29dx"))))))
-
(define-public python2-setuptools-scm
(package-with-python2 python-setuptools-scm))
"0y3hg12iby1qyaspnbisz4s4vxax7syikk3skznwqizqyv89y9yk"))))
(build-system python-build-system)
(arguments
- `(#:python ,python-2))
- (native-inputs
- `(("python-wheel" ,python2-wheel)))
+ `(#:python ,python-2
+ #:phases (modify-phases %standard-phases
+ ;; The build system tests for python-wheel, but it is
+ ;; not required for Guix nor the test suite. Just drop
+ ;; it to make bootstrapping pytest easier.
+ (add-after 'unpack 'drop-wheel-dependency
+ (lambda _
+ (substitute* "setup.cfg"
+ (("^[[:blank:]]+wheel")
+ ""))
+ #t)))))
(propagated-inputs
`(("python-pathlib2" ,python2-pathlib2)
("python-typing" ,python2-typing)))
for older versions of Python.")
(license license:asl2.0)))
+;; For importlib-metadata-bootstrap below.
+(define-public python2-importlib-resources-bootstrap
+ (hidden-package
+ (package/inherit
+ python2-importlib-resources
+ (name "python2-importlib-resources-bootstrap")
+ (propagated-inputs
+ `(("python-pathlib2-bootstrap" ,python2-pathlib2-bootstrap)
+ ("python-typing" ,python2-typing))))))
+
(define-public python-importlib-metadata
(package
(name "python-importlib-metadata")
- (version "1.4.0")
+ (version "1.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "importlib_metadata" version))
(sha256
- (base32 "1n76444v7zn910xrhh8954jdn4byxbn9f1jck6b85a716mbh2z7i"))))
+ (base32
+ "00ikdj4gjhankdljnz7g5ggak4k9lql2926x0x117ir9j2lv7x86"))))
(build-system python-build-system)
(propagated-inputs
`(("python-zipp" ,python-zipp)))
(native-inputs
`(("python-setuptools-scm" ,python-setuptools-scm)
+ ("python-pyfakefs" ,python-pyfakefs)
("python-packaging" ,python-packaging)))
(home-page "https://importlib-metadata.readthedocs.io/")
(synopsis "Read metadata from Python packages")
(package/inherit
base
(name "python2-importlib-metadata")
+ (native-inputs
+ `(("python-setuptools-scm" ,python2-setuptools-scm)
+ ("python-pyfakefs" ,python2-pyfakefs-bootstrap)
+ ("python-packaging" ,python2-packaging-bootstrap)))
(propagated-inputs
`(("python-configparser" ,python2-configparser)
("python-contextlib2" ,python2-contextlib2)
("python-pathlib2" ,python2-pathlib2)
,@(package-propagated-inputs base))))))
+;; This package is used by python2-pytest, and thus must not depend on it.
+(define-public python2-importlib-metadata-bootstrap
+ (hidden-package
+ (package/inherit
+ python2-importlib-metadata
+ (name "python2-importlib-metadata-bootstrap")
+ (arguments
+ `(#:tests? #f
+ ,@(package-arguments python2-importlib-metadata)))
+ (propagated-inputs
+ `(("python-zipp" ,python2-zipp-bootstrap)
+ ("python-pathlib2" ,python2-pathlib2-bootstrap)
+ ("python-configparser" ,python2-configparser)
+ ("python-contextlib2" ,python2-contextlib2-bootstrap)
+ ("python-importlib-resources" ,python2-importlib-resources-bootstrap))))))
+
(define-public python-jaraco-packaging
(package
(name "python-jaraco-packaging")
(define-public python-flake8
(package
(name "python-flake8")
- (version "3.7.7")
+ (version "3.7.9")
(source (origin
(method url-fetch)
(uri (pypi-uri "flake8" version))
(sha256
(base32
- "0qg6zggqigrd4k3gv88shd1a27d0cwgfql8vfiq2c7rl7w3rd6c5"))))
+ "1yscj6avirm6m12bjh4fn2lfgxaamqsjh9pirdqfi0fcgq8ils25"))))
(build-system python-build-system)
(arguments
`(#:phases
("python-mccabe" ,python-mccabe)))
(native-inputs
`(("python-mock" ,python-mock)
- ("python-pytest" ,python-pytest-bootstrap)
- ("python-pytest-runner" ,python-pytest-runner)))
+ ("python-pytest" ,python-pytest-bootstrap)))
(home-page "https://gitlab.com/pycqa/flake8")
(synopsis
"The modular source code checker: pep8, pyflakes and co")
(propagated-inputs
`(("python2-configparser" ,python2-configparser)
("python2-enum34" ,python2-enum34)
+ ("python2-functools32" ,python2-functools32)
("python2-typing" ,python2-typing)
,@(package-propagated-inputs base))))))
(define-public python-fonttools
(package
(name "python-fonttools")
- (version "3.38.0")
+ (version "4.2.4")
(source (origin
(method url-fetch)
(uri (pypi-uri "fonttools" version ".zip"))
(sha256
(base32
- "12ripk3s7skgxr1bs9r8n13r94ym3s8iir7ivfixls9fa4dabmlh"))))
+ "0rz2fn707x8ri507bb5k5y3di851dwchn0886f77g5bgiflmnpwm"))))
(build-system python-build-system)
(native-inputs
`(("unzip" ,unzip)
from an XML-based format.")
(license license:expat)))
+;; Fonttools 4.x dropped support for Python 2, so stick with 3.x here.
(define-public python2-fonttools
- (package-with-python2 python-fonttools))
+ (let ((base (package-with-python2 (strip-python2-variant python-fonttools))))
+ (package/inherit
+ base
+ (version "3.44.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "fonttools" version ".zip"))
+ (sha256
+ (base32
+ "0v6399g755f2hn1ry62i5b6gdinf2fpx2966v3bxh6bjw1accb5p")))))))
(define-public python-ly
(package
(native-inputs
`(("python2-unittest2" ,python2-unittest2))))))
+;; This package is used by python2-pytest via python2-importlib-metadata,
+;; and thus can not depend on python-unittest2 (which depends on pytest).
+(define-public python2-contextlib2-bootstrap
+ (hidden-package
+ (package/inherit
+ python2-contextlib2
+ (name "python2-contextlib2-bootstrap")
+ (arguments
+ `(#:tests? #f
+ ,@(package-arguments python2-contextlib2)))
+ (native-inputs '()))))
+
(define-public python-texttable
(package
(name "python-texttable")
(define-public python-pluggy
(package
(name "python-pluggy")
- (version "0.11.0")
+ (version "0.13.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pluggy" version))
(sha256
(base32
- "10511a54dvafw1jrk75mrhml53c7b7w4yaw7241696lc2hfvr895"))))
+ "1c35qyhvy27q9ih9n899f3h4sdnpgq027dbiilly2qb5cvgarchm"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools-scm" ,python-setuptools-scm)))
(description "Pluggy is an extraction of the plugin manager as used by
Pytest but stripped of Pytest specific details.")
(home-page "https://pypi.org/project/pluggy/")
+ (properties `((python2-variant . ,(delay python2-pluggy))))
(license license:expat)))
(define-public python2-pluggy
- (package-with-python2 python-pluggy))
+ (let ((base (package-with-python2 (strip-python2-variant
+ python-pluggy))))
+ (package/inherit
+ base
+ (propagated-inputs
+ `(("python-importlib-metadata" ,python2-importlib-metadata))))))
+
+;; This package requires python2-importlib-metadata, but that package
+;; ends up needing python2-pluggy via python2-pytest, so we need this
+;; variant to solve the circular dependency.
+(define-public python2-pluggy-bootstrap
+ (hidden-package
+ (package/inherit
+ python2-pluggy
+ (name "python2-pluggy-bootstrap")
+ (arguments
+ `(#:tests? #f
+ ,@(package-arguments python2-pluggy)))
+ (propagated-inputs
+ `(("python-importlib-metadata" ,python2-importlib-metadata-bootstrap))))))
(define-public python-tox
(package
(arguments
`(#:phases (modify-phases %standard-phases
(replace 'check
- (lambda _
- (invoke "pytest" "-vv"))))))
+ (lambda* (#:key tests? #:allow-other-keys)
+ (if tests?
+ (invoke "nosetests" "-v")
+ (format #t "test suite not run~%"))
+ #t)))))
(propagated-inputs
`(("python-markupsafe" ,python-markupsafe)))
(native-inputs
`(("python-mock" ,python-mock)
- ("python-pytest" ,python-pytest)))
+ ("python-nose" ,python-nose)))
(home-page "https://www.makotemplates.org/")
(synopsis "Templating language for Python")
(description "Mako is a templating language for Python that compiles
(define-public python2-pathlib2
(package
(name "python2-pathlib2")
- (version "2.3.3")
+ (version "2.3.5")
(source (origin
(method url-fetch)
(uri (pypi-uri "pathlib2" version))
(sha256
(base32
- "0hpp92vqqgcd8h92msm9slv161b1q160igjwnkf2ag6cx0c96695"))))
+ "0s4qa8c082fdkb17izh4mfgwrjd1n5pya18wvrbwqdvvb5xs9nbc"))))
(build-system python-build-system)
;; We only need the the Python 2 variant, since for Python 3 our minimum
;; version is 3.4 which already includes this package as part of the
(base32
"1w1aaay424ciz8fz3fkzxb0pxzfxn184f2whpyn4fx72bn50x47k"))))
(native-inputs
- `(("python-setuptools-scm" ,python-setuptools-scm-3.3)))
+ `(("python-setuptools-scm" ,python-setuptools-scm)))
(build-system python-build-system)
(home-page "https://github.com/ionelmc/python-lazy-object-proxy")
(synopsis "Lazy object proxy for python")
(define-public python-attrs
(package
(name "python-attrs")
- (version "19.1.0")
+ (version "19.3.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "attrs" version))
(sha256
(base32
- "16g33zr5f449lqc5wgvzpknxryfzrfsxcr6kpgxwn7l5fkv71f7h"))))
+ "0wky4h28n7xnr6xv69p9z6kv8bzn50d10c3drmd9ds8gawbcxdzp"))))
(build-system python-build-system)
(arguments
`(#:modules ((guix build utils)
(define-public python-configparser
(package
(name "python-configparser")
- (version "3.7.1")
+ (version "4.0.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "configparser" version))
(sha256
(base32
- "0cnz213il9lhgda6x70fw7mfqr8da43s3wm343lwzhqx94mgmmav"))))
+ "1priacxym85yjcf68hh38w55nqswaxp71ryjyfdk222kg9l85ln7"))))
+ (native-inputs
+ `(("python-setuptools_scm" ,python-setuptools-scm)))
(build-system python-build-system)
(home-page "https://github.com/jaraco/configparser/")
(synopsis "Backport of configparser from python 3.5")
(define-public python-scandir
(package
(name "python-scandir")
- (version "1.9.0")
+ (version "1.10.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scandir" version))
(sha256
- (base32 "0r3hvf1a9jm1rkqgx40gxkmccknkaiqjavs8lccgq9s8khh5x5s4"))))
+ (base32 "1bkqwmf056pkchf05ywbnf659wqlp6lljcdb0y88wr9f0vv32ijd"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
(arguments
`(#:phases (modify-phases %standard-phases
(replace 'check
- (lambda _ (invoke "py.test" "-vv"))))))
+ (lambda* (#:key tests? #:allow-other-keys)
+ (if tests?
+ (invoke "py.test" "-vv")
+ (format #t "test suite not run~%"))
+ #t)))))
(native-inputs
`(("python-pretend" ,python-pretend)
("python-pytest" ,python-pytest)))
(define-public python2-packaging
(package-with-python2 python-packaging))
+;; Variants with minimal dependencies, for bootstrapping Pytest.
+(define-public python-packaging-bootstrap
+ (hidden-package
+ (package/inherit
+ python-packaging
+ (name "python-packaging-bootstrap")
+ (native-inputs '())
+ (propagated-inputs
+ `(("python-pyparsing" ,python-pyparsing)))
+ (arguments '(#:tests? #f)))))
+
+(define-public python2-packaging-bootstrap
+ (hidden-package
+ (package/inherit
+ python2-packaging
+ (name "python2-packaging-bootstrap")
+ (native-inputs '())
+ (propagated-inputs
+ `(("python-pyparsing" ,python2-pyparsing)))
+ (arguments
+ `(#:tests? #f
+ ,@(package-arguments python2-packaging))))))
+
(define-public python-relatorio
(package
(name "python-relatorio")
(define-public python-typing
(package
(name "python-typing")
- (version "3.6.6")
+ (version "3.7.4.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "typing" version))
(sha256
(base32
- "0ba9acs4awx15bf9v3nrs781msbd2nx826906nj6fqks2bvca9s0"))))
+ "08xs7s5pyq99hbrzw23inczmidz90krvpv9q5p1qrvh6yzrydpwi"))))
(build-system python-build-system)
(home-page "https://docs.python.org/3/library/typing.html")
(synopsis "Type hints for Python")
(define-public python-more-itertools
(package
(name "python-more-itertools")
- (version "7.1.0")
+ (version "8.2.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "more-itertools" version))
(sha256
(base32
- "16phg2f2dvm6ci5wr49ncha5lmc0m2in3bsl33c61vzca4gkvd4b"))))
+ "01x5nwm1zxmnd06cllbdd095xxc2nd25ing1a726m2kd30rbkpdi"))))
(build-system python-build-system)
(home-page "https://github.com/erikrose/more-itertools")
(synopsis "More routines for operating on iterables, beyond itertools")
(base32
"1r12cm6mcdwdzz7d47a6g4l437xsvapdlgyhqay3i2nrlv03da9q"))))
(arguments
- `(#:python ,python2-minimal))
+ `(#:python ,python-2))
(propagated-inputs
`(("python2-six" ,python2-six-bootstrap)))))
(base32
"0fm0w5id2yhqld95hg2m636vjgkz377rvgdfqaxc25vbylr9lklp"))))
(build-system python-build-system)
- (native-inputs
- `(("python-tox" ,python-tox)))
+ (arguments
+ ;; FIXME: Tests require many extra dependencies, and would introduce
+ ;; a circular dependency on hypothesis, which uses this package.
+ '(#:tests? #f))
(home-page "http://www.grantjenks.com/docs/sortedcontainers/")
(synopsis "Sorted List, Sorted Dict, Sorted Set")
(description
pure-Python.")
(license license:asl2.0)))
+(define-public python2-sortedcontainers
+ (package-with-python2 python-sortedcontainers))
+
(define-public python-cloudpickle
(package
(name "python-cloudpickle")
HCoop / jackhill / guix / guix.git / blobdiff