(define r-with-tests
(package
(name "r-with-tests")
- (version "3.6.2")
+ (version "3.6.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
version ".tar.gz"))
(sha256
(base32
- "0m69pfi0nxyriyb2yz74xfzaxwfkinnf9kpvf1rz727vvmfa8rdx"))))
+ "13xaxwfbzj0bd6rn2n27z0n04lb93mcyq991w4vdbbg8v282jc49"))))
(build-system gnu-build-system)
(arguments
`(#:disallowed-references (,tzdata-for-tests)
("openblas" ,openblas)
("gfortran" ,gfortran)
("icu4c" ,icu4c)
- ("libjpeg" ,libjpeg)
+ ("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
("libtiff" ,libtiff)
("libxt" ,libxt)
(define-public r-foreign
(package
(name "r-foreign")
- (version "0.8-75")
+ (version "0.8-76")
(source
(origin
(method url-fetch)
(uri (cran-uri "foreign" version))
(sha256
(base32
- "0g4mi101srjbl17ydb2hl3854m3xj0llj6861lfr30sp08nkqavl"))))
+ "1z6x2x1z12wnv0z4p74d91r5wfaq30sdz4ynwx0lncz1q45mhbh5"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/foreign")
(synopsis "Read data stored by other statistics software")
(define-public r-nlme
(package
(name "r-nlme")
- (version "3.1-144")
+ (version "3.1-145")
(source
(origin
(method url-fetch)
(uri (cran-uri "nlme" version))
(sha256
- (base32 "1gqyq53fdq23wsi3f4n9vg4mn5i0v18zam5lnzlpg581xifx2779"))))
+ (base32 "1i9a3afdmn2ziks0imz0j09ay9n0zb9mhrymy9mg97vvlz5diwrh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(define-public r-nnet
(package
(name "r-nnet")
- (version "7.3-12")
+ (version "7.3-13")
(source
(origin
(method url-fetch)
(uri (cran-uri "nnet" version))
(sha256
(base32
- "17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"))))
+ "1z0rj5cm4ycw1y0gd5wwwg8c2298v90iybgqdqh17967jbi2125f"))))
(build-system r-build-system)
(home-page "http://www.stats.ox.ac.uk/pub/MASS4/")
(synopsis "Feed-forward neural networks and multinomial log-linear models")
(define-public r-survival
(package
(name "r-survival")
- (version "3.1-8")
+ (version "3.1-11")
(source
(origin
(method url-fetch)
(uri (cran-uri "survival" version))
(sha256
(base32
- "15fj4y8c107bwq22amx88r5hw7qndlcbr9sapzrpkpr7iqz3kkyf"))))
+ "1fbhbm3bnpg1nmj37h1d76x813ggvwk0cp51ixmmgb3pz47i5xj4"))))
(build-system r-build-system)
(propagated-inputs
`(("r-matrix" ,r-matrix)))
(define-public r-digest
(package
(name "r-digest")
- (version "0.6.24")
+ (version "0.6.25")
(source
(origin
(method url-fetch)
(uri (cran-uri "digest" version))
(sha256
- (base32 "01xsmcgqva9bza30zh7kj4lzapxgg4yiljfk99g4v6xng50mp604"))))
+ (base32 "1r9dkq0kxkps54gkmgcdngsd068p054va2vhnqhs5jmwp2vsvk0m"))))
(build-system r-build-system)
;; Vignettes require r-knitr, which requires r-digest, so we have to
;; disable them and the tests.
(define-public r-plyr
(package
(name "r-plyr")
- (version "1.8.5")
+ (version "1.8.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "plyr" version))
(sha256
- (base32 "0x4mbb3rgv1ayxqidw0p9i10khbg51fz5r62vw4il8d7licqq07a"))))
+ (base32 "11sjjdn146w95s1vsfmmgdls082cbnm1slv98xvyjhsl2mpx4mga"))))
(build-system r-build-system)
(propagated-inputs `(("r-rcpp" ,r-rcpp)))
(home-page "http://had.co.nz/plyr")
(define-public r-ggplot2
(package
(name "r-ggplot2")
- (version "3.2.1")
+ (version "3.3.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "ggplot2" version))
(sha256
- (base32 "0mjswqiqcwm0aqxll16bx2kwa6c9km3aql87bdj4347n1ali94g3"))))
+ (base32 "0j21am605kqqzlwhm45kaj0m2irnmy2vz0j7kzi9f0qdzrv3q3ij"))))
(build-system r-build-system)
(propagated-inputs
`(("r-digest" ,r-digest)
+ ("r-glue" ,r-glue)
("r-gtable" ,r-gtable)
- ("r-lazyeval" ,r-lazyeval)
+ ("r-isoband" ,r-isoband)
("r-mass" ,r-mass)
("r-mgcv" ,r-mgcv)
("r-tibble" ,r-tibble)
- ("r-reshape2" ,r-reshape2)
("r-rlang" ,r-rlang)
("r-scales" ,r-scales)
("r-svglite" ,r-svglite) ; Needed for 'ggsave'
- ("r-viridislite" ,r-viridislite)
("r-withr" ,r-withr)))
(home-page "https://ggplot2.tidyverse.org")
(synopsis "An implementation of the grammar of graphics")
("r-stringr" ,r-stringr)
("r-xfun" ,r-xfun)
("r-yaml" ,r-yaml)))
- (home-page "http://yihui.name/knitr/")
+ (home-page "https://yihui.org/knitr/")
(synopsis "General-purpose package for dynamic report generation in R")
(description
"This package provides a general-purpose tool for dynamic report
(define-public r-testthat
(package
(name "r-testthat")
- (version "2.3.1")
+ (version "2.3.2")
(source (origin
(method url-fetch)
(uri (cran-uri "testthat" version))
(sha256
(base32
- "0m8xchdpgn9iwj6gb2qw46zr85v9zf1gkbr9nnahmy5sp1s9bbky"))))
+ "0v70v2fs0f2ir962z9csbjlj8snrq9mbjfyhhb9dhz3zy26qs9hs"))))
(build-system r-build-system)
(propagated-inputs
`(("r-cli" ,r-cli)
(define-public r-rlang
(package
(name "r-rlang")
- (version "0.4.4")
+ (version "0.4.5")
(source (origin
(method url-fetch)
(uri (cran-uri "rlang" version))
(sha256
(base32
- "1kqmrk00lnkbclnvj1dizjbdav0g1w44yd6ja4yy3bivwan9jf23"))))
+ "1a0h3dr519p3jj6aygbhwi9f2zwlan6d07f1gkh2db56y5vaq7yd"))))
(build-system r-build-system)
(home-page "http://rlang.tidyverse.org")
(synopsis "Functions for base types, core R and Tidyverse features")
(define-public r-dplyr
(package
(name "r-dplyr")
- (version "0.8.3")
+ (version "0.8.5")
(source (origin
(method url-fetch)
(uri (cran-uri "dplyr" version))
(sha256
(base32
- "032c89wa04g9rih9shyvwl3il0bsrv3xk489x6867sk9bb3amd38"))))
+ "0602b4a9nffxx67q57csqp87nkrv33nn9wlaw1458yys9fzx6l2p"))))
(build-system r-build-system)
(propagated-inputs
`(("r-assertthat" ,r-assertthat)
("r-bh" ,r-bh)
+ ("r-ellipsis" ,r-ellipsis)
("r-glue" ,r-glue)
("r-magrittr" ,r-magrittr)
("r-pkgconfig" ,r-pkgconfig)
("r-rlang" ,r-rlang)
("r-tibble" ,r-tibble)
("r-tidyselect" ,r-tidyselect)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/hadley/dplyr")
(synopsis "Tools for working with data frames in R")
(description
(define-public python-statsmodels
(package
(name "python-statsmodels")
- (version "0.9.0")
+ (version "0.11.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "statsmodels" version))
(sha256
(base32
- "0fxs8a7sp4d7jvqlm36yi45i2d28kjfvraf9q8i9jr1chhxgjqb4"))))
+ "1w6mf8b86vizi2895j11szqryr2v1ckjig3wp9fv94aslfh3zpjv"))))
(build-system python-build-system)
(arguments
`(;; The test suite is very large and rather brittle. Tests often fail
(define-public r-ade4
(package
(name "r-ade4")
- (version "1.7-13")
+ (version "1.7-15")
(source
(origin
(method url-fetch)
(uri (cran-uri "ade4" version))
(sha256
(base32
- "16z9jk4qj35ghsk4lwmq241dgc770y8a70dlmp9q4gz6d8ssgl7m"))))
+ "1xpxznlqm8wb4d5z2dcrl0wi3jjciq2hr5rcx2b5aaipiiyzm1ij"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-mass" ,r-mass)))
+ `(("r-mass" ,r-mass)
+ ("r-pixmap" ,r-pixmap)
+ ("r-sp" ,r-sp)))
(home-page "http://pbil.univ-lyon1.fr/ADE-4")
(synopsis "Multivariate data analysis and graphical display")
(description
("r-jsonlite" ,r-jsonlite)
("r-magrittr" ,r-magrittr)
("r-promises" ,r-promises)))
- (home-page "http://rstudio.github.io/DT")
+ (home-page "https://rstudio.github.io/DT")
(synopsis "R wrapper of the DataTables JavaScript library")
(description
"This package allows for data objects in R to be rendered as HTML tables
(define-public r-mvtnorm
(package
(name "r-mvtnorm")
- (version "1.0-12")
+ (version "1.1-0")
(source (origin
(method url-fetch)
(uri (cran-uri "mvtnorm" version))
(sha256
(base32
- "03rfmii9j8x8fjv7hp8qd28z0svl4w0x54k2f4jpwv4qa7079i24"))))
+ "0pfb6qk4yb6xaya8i1wvx6dnc3jj4s2g94sq2kzv4p8zn4pf24l1"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
`(("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-viridislite" ,r-viridislite)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr))) ; for vignettes
(home-page "https://github.com/sjmgarnier/viridis")
(synopsis "Matplotlib default color map")
(description
(define-public r-tidyselect
(package
(name "r-tidyselect")
- (version "0.2.5")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "tidyselect" version))
(sha256
(base32
- "0x3cp36byhfjajikr1lwffjm85ayw3bcs7d7kb0cydgs61ifiqjw"))))
+ "1bwwsljkg1bxh7xnqxv7n0n1s9y8x407i6lsv826vy1ss1k1fxpy"))))
(build-system r-build-system)
(propagated-inputs
- `(("r-glue" ,r-glue)
+ `(("r-ellipsis" ,r-ellipsis)
+ ("r-glue" ,r-glue)
("r-purrr" ,r-purrr)
- ("r-rcpp" ,r-rcpp)
- ("r-rlang" ,r-rlang)))
+ ("r-rlang" ,r-rlang)
+ ("r-vctrs" ,r-vctrs)))
(home-page "https://cran.r-project.org/web/packages/tidyselect")
(synopsis "Select from a set of strings")
(description
(define-public r-hexbin
(package
(name "r-hexbin")
- (version "1.28.0")
+ (version "1.28.1")
(source
(origin
(method url-fetch)
(uri (cran-uri "hexbin" version))
(sha256
(base32
- "0b58jb1kz39wzrnkv077cfzns889xly7psvhxnm3xmnx6yvd986d"))))
+ "1ry6jm3lqz3mj0s5rzbs6mpkz2hxpnvbw8c1vwc4pj7b173r5l22"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lattice" ,r-lattice)))
(native-inputs
- `(("gfortran" ,gfortran)))
+ `(("gfortran" ,gfortran)
+ ("r-knitr" ,r-knitr))) ; for vignettes
(home-page "https://github.com/edzer/hexbin")
(synopsis "Hexagonal binning routines")
(description
(propagated-inputs
`(("r-lattice" ,r-lattice)
("r-matrix" ,r-matrix)))
- (home-page "http://spams-devel.gforge.inria.fr")
+ (home-page "https://spams-devel.gforge.inria.fr")
(synopsis "Toolbox for solving sparse estimation problems")
(description "SPAMS (SPArse Modeling Software) is an optimization toolbox
for solving various sparse estimation problems. It includes tools for the
(define-public r-gplots
(package
(name "r-gplots")
- (version "3.0.1.2")
+ (version "3.0.3")
(source
(origin
(method url-fetch)
(uri (cran-uri "gplots" version))
(sha256
(base32
- "0vrm7wqrmqsmfrc070r9chpzb0vv60pay2lyar9qxfry6bsrvx86"))))
+ "0hs6mk48i9yd43rg9wfjc2nxsjjwrnpifxqvxkv8ah18kvpd6xnp"))))
(build-system r-build-system)
(propagated-inputs
`(("r-catools" ,r-catools)
(define-public r-mixtools
(package
(name "r-mixtools")
- (version "1.1.0")
+ (version "1.2.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "mixtools" version))
(sha256
(base32
- "13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl"))))
+ "08whic8hmmzi55b7azwj11l2x5r9s5qbyrv7s9jr08156vqkw0zg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mass" ,r-mass)
+ ("r-kernlab" ,r-kernlab)
("r-segmented" ,r-segmented)
("r-survival" ,r-survival)))
(home-page "https://cran.r-project.org/web/packages/mixtools")
(define-public r-modeltools
(package
(name "r-modeltools")
- (version "0.2-22")
+ (version "0.2-23")
(source
(origin
(method url-fetch)
(uri (cran-uri "modeltools" version))
(sha256
(base32
- "1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5"))))
+ "1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"))))
(build-system r-build-system)
(home-page "https://cran.r-project.org/web/packages/modeltools")
(synopsis "Tools and classes for statistical models")
(define-public r-robust
(package
(name "r-robust")
- (version "0.4-18.2")
+ (version "0.5-0.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "robust" version))
(sha256
(base32
- "02x7d6dgx3skiadvx5m3c44b4bhz37ycpfhc25dhhv50y1db6l3k"))))
+ "1ks5scp8bnicl9j1r8yrmz668fjs6ifdmi540zw6d2ck500bbw42"))))
(build-system r-build-system)
(propagated-inputs
`(("r-fit-models" ,r-fit-models)
(define-public r-nloptr
(package
(name "r-nloptr")
- (version "1.2.1")
+ (version "1.2.2")
(source
(origin
(method url-fetch)
(uri (cran-uri "nloptr" version))
(sha256
(base32
- "15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz"))))
+ "19k7nd3a7cg35k5i1cwj1lhgfs02jb7bc2gwlammpq6j41rh4vr7"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr) ; for building vignettes
(define-public r-pbkrtest
(package
(name "r-pbkrtest")
- (version "0.4-7")
+ (version "0.4-8.6")
(source
(origin
(method url-fetch)
(uri (cran-uri "pbkrtest" version))
(sha256
(base32
- "1si3bhi59xc51a0pgjjglccq3h4aljyhw2k1b8574s145fnh7fsw"))))
+ "0s5xhhrhv5i9680lw6af9lj2x4jc3fygmzzk0jjpxnb8g4b3p1jz"))))
(build-system r-build-system)
(propagated-inputs
`(("r-lme4" ,r-lme4)
+ ("r-magrittr" ,r-magrittr)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)))
(home-page "http://people.math.aau.dk/~sorenh/software/pbkrtest/")
(define-public r-sn
(package
(name "r-sn")
- (version "1.5-4")
+ (version "1.5-5")
(source
(origin
(method url-fetch)
(uri (cran-uri "sn" version))
(sha256
(base32
- "0x46gxkplxbnhaqbpiav1r4xlv4ib7n57kxmca7scqwj22y7wrs6"))))
+ "0ymyyc0di1g2b11wzljiih05z3rxck48wn74bygg3fiby973z49f"))))
(build-system r-build-system)
(propagated-inputs
`(("r-mnormt" ,r-mnormt)
(define-public r-forcats
(package
(name "r-forcats")
- (version "0.4.0")
+ (version "0.5.0")
(source
(origin
(method url-fetch)
(uri (cran-uri "forcats" version))
(sha256
(base32
- "1cnjh23z59fhbjmy7y95425hcq3m5wrwqvahsxwi7zm6d9bwp0vw"))))
+ "1i4hblsjgwkrcwgvgsb5yj33pw1hwdj3lr9dvxymkv1kjdw0x5lg"))))
(build-system r-build-system)
(propagated-inputs
`(("r-ellipsis" ,r-ellipsis)
(define-public r-directlabels
(package
(name "r-directlabels")
- (version "2018.05.22")
+ (version "2020.1.31")
(source
(origin
(method url-fetch)
(uri (cran-uri "directlabels" version))
(sha256
(base32
- "0xcpc56ssb9430b0xcdhayk3qaak2qcakyss2pz14y5w2027hblv"))))
+ "08s1gnwp4bn8xahwjaq0f1qzhwh2dvybzhq3z7xyzn8cnyzmis6c"))))
(build-system r-build-system)
(propagated-inputs
`(("r-quadprog" ,r-quadprog)))