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a1315b7f | 1 | ;;; GNU Guix --- Functional package management for GNU |
f7a98af0 | 2 | ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz> |
35044d3e | 3 | ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> |
69b13cd4 | 4 | ;;; Copyright © 2021 Efraim Flashner <efraim@flashner.co.il> |
a1315b7f | 5 | ;;; |
6 | ;;; This file is part of GNU Guix. | |
7 | ;;; | |
8 | ;;; GNU Guix is free software; you can redistribute it and/or modify it | |
9 | ;;; under the terms of the GNU General Public License as published by | |
10 | ;;; the Free Software Foundation; either version 3 of the License, or (at | |
11 | ;;; your option) any later version. | |
12 | ;;; | |
13 | ;;; GNU Guix is distributed in the hope that it will be useful, but | |
14 | ;;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
15 | ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
16 | ;;; GNU General Public License for more details. | |
17 | ;;; | |
18 | ;;; You should have received a copy of the GNU General Public License | |
19 | ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. | |
20 | ||
21 | (define-module (gnu packages julia-xyz) | |
22 | #:use-module ((guix licenses) #:prefix license:) | |
23 | #:use-module (guix packages) | |
24 | #:use-module (guix git-download) | |
3291e4ba | 25 | #:use-module (guix build-system julia) |
277fef20 | 26 | #:use-module (gnu packages gcc) |
00834041 | 27 | #:use-module (gnu packages julia-jll)) |
a1315b7f | 28 | |
651a5573 | 29 | (define-public julia-abstractffts |
30 | (package | |
31 | (name "julia-abstractffts") | |
32 | (version "1.0.1") | |
33 | (source | |
34 | (origin | |
35 | (method git-fetch) | |
36 | (uri (git-reference | |
37 | (url "https://github.com/JuliaMath/AbstractFFTS.jl") | |
38 | (commit (string-append "v" version)))) | |
39 | (file-name (git-file-name name version)) | |
40 | (sha256 | |
41 | (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0")))) | |
42 | (build-system julia-build-system) | |
43 | (inputs ;required for tests | |
44 | `(("julia-unitful" ,julia-unitful))) | |
45 | (home-page "https://github.com/JuliaGPU/Adapt.jl") | |
46 | (synopsis "General framework for fast Fourier transforms (FFTs)") | |
47 | (description "This package allows multiple FFT packages to co-exist with | |
48 | the same underlying @code{fft(x)} and @code{plan_fft(x)} interface. It is | |
49 | mainly not intended to be used directly. Instead, developers of packages that | |
50 | implement FFTs (such as @code{FFTW.jl} or @code{FastTransforms.jl}) extend the | |
51 | types/functions defined in AbstractFFTs.") | |
52 | (license license:expat))) | |
53 | ||
64c1c497 | 54 | (define-public julia-abstracttrees |
55 | (package | |
56 | (name "julia-abstracttrees") | |
57 | (version "0.3.4") | |
58 | (source | |
59 | (origin | |
60 | (method git-fetch) | |
61 | (uri (git-reference | |
62 | (url "https://github.com/JuliaCollections/AbstractTrees.jl") | |
63 | (commit (string-append "v" version)))) | |
64 | (file-name (git-file-name name version)) | |
65 | (sha256 | |
66 | (base32 "16is5n2qa69cci34vfazxsa7ik6q0hbnnqrbrhkq8frh142f1xs8")))) | |
67 | (build-system julia-build-system) | |
68 | (home-page "https://juliacollections.github.io/AbstractTrees.jl/stable/") | |
69 | (synopsis "Abstract Julia interfaces for working with trees") | |
70 | (description "This Julia package provides several utilities for working | |
71 | with tree-like data structures. Most importantly, it defines the | |
72 | @code{children} method that any package that contains such a data structure | |
73 | may import and extend in order to take advantage of any generic tree algorithm | |
74 | in this package.") | |
75 | (license license:expat))) | |
76 | ||
20767b9b | 77 | (define-public julia-adapt |
78 | (package | |
79 | (name "julia-adapt") | |
963ae006 | 80 | (version "3.3.1") |
20767b9b | 81 | (source |
82 | (origin | |
83 | (method git-fetch) | |
84 | (uri (git-reference | |
85 | (url "https://github.com/JuliaGPU/Adapt.jl") | |
86 | (commit (string-append "v" version)))) | |
81d45a66 | 87 | (file-name (git-file-name name version)) |
20767b9b | 88 | (sha256 |
963ae006 | 89 | (base32 "009fj59fzhvfsyw35kakllsh36k3xlwyzq8qa5f5k598i3pq14i7")))) |
20767b9b | 90 | (build-system julia-build-system) |
91 | (home-page "https://github.com/JuliaGPU/Adapt.jl") | |
92 | (synopsis "Package providing the @code{adapt} function, similar to @code{convert}") | |
93 | (description "This Julia package provides the @code{adapt(T, x)} function | |
94 | acts like @code{convert(T, x)}, but without the restriction of returning a | |
95 | @code{T}. This allows you to \"convert\" wrapper types like @code{Adjoint} to | |
96 | be GPU compatible without throwing away the wrapper.") | |
97 | (license license:expat))) | |
98 | ||
130c13c8 EF |
99 | (define-public julia-aqua |
100 | (package | |
101 | (name "julia-aqua") | |
102 | (version "0.5.0") | |
103 | (source | |
104 | (origin | |
105 | (method git-fetch) | |
106 | (uri (git-reference | |
107 | (url "https://github.com/JuliaTesting/Aqua.jl") | |
108 | (commit (string-append "v" version)))) | |
109 | (file-name (git-file-name name version)) | |
110 | (sha256 | |
111 | (base32 "0zcvrwnyhh2kr4d2xv7ps8dh7byw78dx6yb1m9m4dblgscn5kypb")))) | |
112 | (build-system julia-build-system) | |
113 | (home-page "https://github.com/JuliaTesting/Aqua.jl") | |
114 | (synopsis "Automated quality assurance for Julia packages") | |
115 | (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages}, | |
116 | provides functions to run a few automatable checks for Julia packages.") | |
117 | (license license:expat))) | |
118 | ||
ef159514 EF |
119 | (define-public julia-arrayinterface |
120 | (package | |
121 | (name "julia-arrayinterface") | |
122 | (version "3.1.17") | |
123 | (source | |
124 | (origin | |
125 | (method git-fetch) | |
126 | (uri (git-reference | |
127 | (url "https://github.com/JuliaArrays/ArrayInterface.jl") | |
128 | (commit (string-append "v" version)))) | |
129 | (file-name (git-file-name name version)) | |
130 | (sha256 | |
131 | (base32 "1yfl7wsciqm8ggfs6grxdrvpkxniy4c63d05f65v2j0c55z8a6mn")))) | |
132 | (build-system julia-build-system) | |
133 | (propagated-inputs | |
134 | `(("julia-ifelse" ,julia-ifelse) | |
135 | ("julia-requires" ,julia-requires) | |
136 | ("julia-static" ,julia-static))) | |
137 | (native-inputs | |
138 | `(("julia-aqua" ,julia-aqua) | |
139 | ("julia-bandedmatrices" ,julia-bandedmatrices) | |
140 | ("julia-blockbandedmatrices" ,julia-blockbandedmatrices) | |
141 | ("julia-ifelse" ,julia-ifelse) | |
142 | ("julia-offsetarrays" ,julia-offsetarrays) | |
143 | ("julia-staticarrays" ,julia-staticarrays))) | |
144 | (home-page "https://github.com/JuliaArrays/ArrayInterface.jl") | |
145 | (synopsis "Base array interface primitives") | |
146 | (description "The purpose of this library is to solidify extensions to the | |
147 | current @code{AbstractArray} interface, which are put to use in package | |
148 | ecosystems like @code{DifferentialEquations.jl}. Since these libraries are | |
149 | live, this package will serve as a staging ground for ideas before they are | |
150 | merged into Base Julia. For this reason, no functionality is exported so that | |
151 | if such functions are added and exported in a future Base Julia, there will be | |
152 | no issues with the upgrade.") | |
153 | (license license:expat))) | |
154 | ||
6dd2634d EF |
155 | (define-public julia-arraylayouts |
156 | (package | |
157 | (name "julia-arraylayouts") | |
158 | (version "0.7.0") | |
159 | (source | |
160 | (origin | |
161 | (method git-fetch) | |
162 | (uri (git-reference | |
163 | (url "https://github.com/JuliaMatrices/ArrayLayouts.jl") | |
164 | (commit (string-append "v" version)))) | |
165 | (file-name (git-file-name name version)) | |
166 | (sha256 | |
167 | (base32 "01725v4jp8h8zwn85splw907r206h1hnp205pchmzjin7h4659xz")))) | |
168 | (build-system julia-build-system) | |
169 | (propagated-inputs | |
170 | `(("julia-fillarrays" ,julia-fillarrays))) | |
171 | (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl") | |
172 | (synopsis "Array layouts and general fast linear algebra") | |
173 | (description "This package implements a trait-based framework for describing | |
174 | array layouts such as column major, row major, etc. that can be dispatched to | |
175 | appropriate BLAS or optimised Julia linear algebra routines. This supports a | |
176 | much wider class of matrix types than Julia's in-built @code{StridedArray}.") | |
177 | (license license:expat))) | |
3fed0af9 EF |
178 | |
179 | (define-public julia-axisalgorithms | |
180 | (package | |
181 | (name "julia-axisalgorithms") | |
182 | (version "1.0.0") | |
183 | (source | |
184 | (origin | |
185 | (method git-fetch) | |
186 | (uri (git-reference | |
187 | (url "https://github.com/timholy/AxisAlgorithms.jl") | |
188 | (commit (string-append "v" version)))) | |
189 | (file-name (git-file-name name version)) | |
190 | (sha256 | |
191 | (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk")))) | |
192 | (build-system julia-build-system) | |
193 | (propagated-inputs | |
194 | `(("julia-woodburymatrices" ,julia-woodburymatrices))) | |
195 | (home-page "https://github.com/timholy/AxisAlgorithms.jl") | |
196 | (synopsis "Filtering and linear algebra routines for multidimensional arrays") | |
197 | (description "@code{AxisAlgorithms} is a collection of filtering and linear | |
198 | algebra algorithms for multidimensional arrays. For algorithms that would | |
199 | typically apply along the columns of a matrix, you can instead pick an arbitrary | |
200 | axis (dimension).") | |
201 | (license license:expat))) | |
6dd2634d | 202 | |
cb66e4ae EF |
203 | (define-public julia-axisarrays |
204 | (package | |
205 | (name "julia-axisarrays") | |
206 | (version "0.4.3") | |
207 | (source | |
208 | (origin | |
209 | (method git-fetch) | |
210 | (uri (git-reference | |
211 | (url "https://github.com/JuliaArrays/AxisArrays.jl") | |
212 | (commit (string-append "v" version)))) | |
213 | (file-name (git-file-name name version)) | |
214 | (sha256 | |
215 | (base32 "079rj7wvh9ks293g2ih1yah5k0sg8wazw08z3vg2bxj4s16wr64p")))) | |
216 | (build-system julia-build-system) | |
217 | (propagated-inputs | |
218 | `(("julia-rangearrays" ,julia-rangearrays) | |
219 | ("julia-intervalsets" ,julia-intervalsets) | |
220 | ("julia-itertools" ,julia-itertools))) | |
221 | (native-inputs | |
222 | `(("julia-offsetarrays" ,julia-offsetarrays) | |
223 | ("julia-unitful" ,julia-unitful))) | |
224 | (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/") | |
225 | (synopsis "Arrays where each dimension can have a named axis with values") | |
226 | (description "This package for the Julia language provides an array type | |
227 | (the AxisArray) that knows about its dimension names and axis values. This | |
228 | allows for indexing by name without incurring any runtime overhead. This | |
229 | permits one to implement algorithms that are oblivious to the storage order of | |
230 | the underlying arrays. AxisArrays can also be indexed by the values along their | |
231 | axes, allowing column names or interval selections.") | |
232 | (license license:expat))) | |
233 | ||
48b9f37a EF |
234 | (define-public julia-bandedmatrices |
235 | (package | |
236 | (name "julia-bandedmatrices") | |
237 | (version "0.16.9") | |
238 | (source | |
239 | (origin | |
240 | (method git-fetch) | |
241 | (uri (git-reference | |
242 | (url "https://github.com/JuliaMatrices/BandedMatrices.jl") | |
243 | (commit (string-append "v" version)))) | |
244 | (file-name (git-file-name name version)) | |
245 | (sha256 | |
246 | (base32 "105y5d3208s0byk3p0469sfy79lhjpdblk6karbwj8x7hl26na00")))) | |
247 | (build-system julia-build-system) | |
248 | (propagated-inputs | |
249 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
250 | ("julia-fillarrays" ,julia-fillarrays))) | |
251 | (native-inputs | |
252 | `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra))) | |
253 | (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl") | |
254 | (synopsis "Julia package for representing banded matrices") | |
255 | (description "This package supports representing banded matrices by only | |
256 | the entries on the bands.") | |
257 | (license license:expat))) | |
258 | ||
03010d5d | 259 | (define-public julia-benchmarktools |
260 | (package | |
261 | (name "julia-benchmarktools") | |
6663d895 | 262 | (version "0.7.0") |
03010d5d | 263 | (source |
264 | (origin | |
265 | (method git-fetch) | |
266 | (uri (git-reference | |
267 | (url "https://github.com/JuliaCI/BenchmarkTools.jl") | |
268 | (commit (string-append "v" version)))) | |
269 | (file-name (git-file-name name version)) | |
270 | (sha256 | |
6663d895 | 271 | (base32 "000izw9pj7cbh9r35nnwg2ijkb9dpfd5nkl2889b8b2dpsh4fi63")))) |
03010d5d | 272 | (build-system julia-build-system) |
273 | (propagated-inputs `(("julia-json" ,julia-json))) | |
274 | (home-page "https://github.com/JuliaCI/BenchmarkTools.jl") | |
275 | (synopsis "Benchmarking framework for the Julia language") | |
276 | (description "@code{BenchmarkTools.jl} makes performance tracking of Julia | |
277 | code easy by supplying a framework for writing and running groups of | |
278 | benchmarks as well as comparing benchmark results.") | |
279 | (license license:expat))) | |
280 | ||
567fa057 EF |
281 | (define-public julia-blockarrays |
282 | (package | |
283 | (name "julia-blockarrays") | |
284 | (version "0.15.3") | |
285 | (source | |
286 | (origin | |
287 | (method git-fetch) | |
288 | (uri (git-reference | |
289 | (url "https://github.com/JuliaArrays/BlockArrays.jl") | |
290 | (commit (string-append "v" version)))) | |
291 | (file-name (git-file-name name version)) | |
292 | (sha256 | |
293 | (base32 "15nd493bfkx92ihnr8dj8mb155dj44iqw266igv0qr5q0wad2bfr")))) | |
294 | (build-system julia-build-system) | |
295 | (propagated-inputs | |
296 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
297 | ("julia-fillarrays" ,julia-fillarrays))) | |
298 | (native-inputs | |
299 | `(("julia-lazyarrays" ,julia-lazyarrays) | |
300 | ("julia-offsetarrays" ,julia-offsetarrays) | |
301 | ("julia-staticarrays" ,julia-staticarrays))) | |
302 | (home-page "https://github.com/JuliaArrays/BlockArrays.jl") | |
303 | (synopsis "BlockArrays for Julia") | |
304 | (description "A block array is a partition of an array into blocks or | |
305 | subarrays. This package has two purposes. Firstly, it defines an interface for | |
306 | an @code{AbstractBlockArray} block arrays that can be shared among types | |
307 | representing different types of block arrays. The advantage to this is that it | |
308 | provides a consistent API for block arrays. | |
309 | Secondly, it also implements two different type of block arrays that follow the | |
310 | @code{AbstractBlockArray} interface. The type @code{BlockArray} stores each | |
311 | block contiguously while the type @code{PseudoBlockArray} stores the full matrix | |
312 | contiguously. This means that @code{BlockArray} supports fast non copying | |
313 | extraction and insertion of blocks while @code{PseudoBlockArray} supports fast | |
314 | access to the full matrix to use in in for example a linear solver.") | |
315 | (license license:expat))) | |
316 | ||
30699854 EF |
317 | (define-public julia-blockbandedmatrices |
318 | (package | |
319 | (name "julia-blockbandedmatrices") | |
320 | (version "0.10.6") | |
321 | (source | |
322 | (origin | |
323 | (method git-fetch) | |
324 | (uri (git-reference | |
325 | (url "https://github.com/JuliaMatrices/BlockBandedMatrices.jl") | |
326 | (commit (string-append "v" version)))) | |
327 | (file-name (git-file-name name version)) | |
328 | (sha256 | |
329 | (base32 "0q9ni4pgdkb00jb42fdzlhx745852xx2666vr96k0c4l0cn5mi0y")))) | |
330 | (build-system julia-build-system) | |
331 | (propagated-inputs | |
332 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
333 | ("julia-bandedmatrices" ,julia-bandedmatrices) | |
334 | ("julia-blockarrays" ,julia-blockarrays) | |
335 | ("julia-fillarrays" ,julia-fillarrays) | |
336 | ("julia-matrixfactorizations" ,julia-matrixfactorizations))) | |
337 | (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl") | |
338 | (synopsis "Block-banded matrices and banded-block-banded matrices") | |
339 | (description "This package supports representing block-banded and | |
340 | banded-block-banded matrices by only storing the entries in the non-zero bands. | |
341 | A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of | |
342 | @code{BlockArrays.jl} whose layout of non-zero blocks is banded.") | |
343 | (license license:expat))) | |
344 | ||
52d09b1f | 345 | (define-public julia-bufferedstreams |
346 | (package | |
347 | (name "julia-bufferedstreams") | |
348 | (version "1.0.0") | |
349 | (source | |
350 | (origin | |
351 | (method git-fetch) | |
352 | (uri (git-reference | |
353 | (url "https://github.com/BioJulia/BufferedStreams.jl") | |
354 | (commit (string-append "v" version)))) | |
355 | (file-name (git-file-name name version)) | |
356 | (sha256 | |
357 | (base32 "0sf4sxbq55mg2pwxyxf0c839z1lk0yxg8nmb7617bfbvw31cp88z")))) | |
358 | (build-system julia-build-system) | |
359 | ;; The package is old and tests are using undefined functions. They also | |
360 | ;; freeze, see | |
361 | ;; https://travis-ci.org/BioJulia/BufferedStreams.jl/jobs/491050182 | |
362 | (arguments | |
363 | '(#:tests? #f | |
364 | #:julia-package-name "BufferedStreams")) | |
365 | (propagated-inputs `(("julia-compat" ,julia-compat))) | |
366 | (home-page "https://github.com/BioJulia/BufferedStreams.jl") | |
367 | (synopsis "Fast composable IO streams") | |
368 | (description "@code{BufferedStreams.jl} provides buffering for IO | |
369 | operations. It can wrap any @code{IO} type automatically making incremental | |
370 | reading and writing faster.") | |
371 | (license license:expat))) | |
372 | ||
b91ad832 | 373 | (define-public julia-calculus |
374 | (package | |
375 | (name "julia-calculus") | |
376 | (version "0.5.1") | |
377 | (source | |
378 | (origin | |
379 | (method git-fetch) | |
380 | (uri (git-reference | |
381 | (url "https://github.com/JuliaMath/Calculus.jl") | |
382 | (commit (string-append "v" version)))) | |
383 | (file-name (git-file-name name version)) | |
384 | (sha256 | |
385 | (base32 "0xh0ak2ycsjw2h86ja24ch3kn2d18zx3frrds78aimwdnqb1gdc2")))) | |
386 | (build-system julia-build-system) | |
387 | (home-page "https://github.com/JuliaMath/Calculus.jl") | |
388 | (synopsis "Common utilities for automatic differentiation") | |
389 | (description "This package provides tools for working with the basic | |
390 | calculus operations of differentiation and integration. The @code{Calculus} | |
391 | package produces approximate derivatives by several forms of finite | |
392 | differencing or produces exact derivative using symbolic differentiation. It | |
393 | can also be used to compute definite integrals by different numerical | |
394 | methods.") | |
395 | (license license:expat))) | |
396 | ||
397f8c48 | 397 | (define-public julia-chainrules |
398 | (package | |
399 | (name "julia-chainrules") | |
a7a48355 | 400 | (version "0.7.65") |
397f8c48 | 401 | (source |
402 | (origin | |
403 | (method git-fetch) | |
404 | (uri (git-reference | |
405 | (url "https://github.com/JuliaDiff/ChainRules.jl") | |
406 | (commit (string-append "v" version)))) | |
407 | (file-name (git-file-name name version)) | |
408 | (sha256 | |
a7a48355 | 409 | (base32 "0697m5y5ryqnhw6cbk90rlydrxan2b308pzbl86qz4mzhypyk7yi")))) |
397f8c48 | 410 | (build-system julia-build-system) |
411 | (inputs ;required for test | |
412 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils) | |
413 | ("julia-finitedifferences" ,julia-finitedifferences) | |
414 | ("julia-nanmath" ,julia-nanmath) | |
415 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
416 | (propagated-inputs | |
417 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
418 | ("julia-compat" ,julia-compat) | |
419 | ("julia-reexport" ,julia-reexport) | |
420 | ("julia-requires" ,julia-requires))) | |
421 | (home-page "https://github.com/JuliaDiff/ChainRules.jl") | |
422 | (synopsis "Common utilities for automatic differentiation") | |
423 | (description "The is package provides a variety of common utilities that | |
424 | can be used by downstream automatic differentiation (AD) tools to define and | |
425 | execute forward-, reverse-, and mixed-mode primitives.") | |
426 | (license license:expat))) | |
427 | ||
bb1ca1f3 | 428 | (define-public julia-chainrulescore |
429 | (package | |
430 | (name "julia-chainrulescore") | |
7308308c | 431 | (version "0.9.43") |
bb1ca1f3 | 432 | (source |
433 | (origin | |
434 | (method git-fetch) | |
435 | (uri (git-reference | |
436 | (url "https://github.com/JuliaDiff/ChainRulesCore.jl") | |
437 | (commit (string-append "v" version)))) | |
438 | (file-name (git-file-name name version)) | |
439 | (sha256 | |
7308308c | 440 | (base32 "12by6zcxv0ivpf0f22gc9i067360syda9m2lxk0rhypxq4smj8w4")))) |
bb1ca1f3 | 441 | (build-system julia-build-system) |
442 | (inputs ;required for tests | |
443 | `(("julia-benchmarktools" ,julia-benchmarktools) | |
444 | ("julia-staticarrays" ,julia-staticarrays))) | |
445 | (propagated-inputs | |
446 | `(("julia-compat" ,julia-compat))) | |
447 | (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl") | |
448 | (synopsis "Common utilities used by downstream automatic differentiation tools") | |
449 | (description "The package provides a light-weight dependency for defining | |
450 | sensitivities for functions without the need to depend on ChainRules itself.") | |
451 | (license license:expat))) | |
452 | ||
9eb29396 | 453 | (define-public julia-chainrulestestutils |
454 | (package | |
455 | (name "julia-chainrulestestutils") | |
7bb000ec | 456 | (version "0.6.11") |
9eb29396 | 457 | (source |
458 | (origin | |
459 | (method git-fetch) | |
460 | (uri (git-reference | |
461 | (url "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") | |
462 | (commit (string-append "v" version)))) | |
463 | (file-name (git-file-name name version)) | |
464 | (sha256 | |
7bb000ec | 465 | (base32 "1nx2fzxhh3q8znnjfjbgf7776scszixmigwna3hvmdfixsk58x0i")))) |
9eb29396 | 466 | (build-system julia-build-system) |
467 | (propagated-inputs | |
468 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
469 | ("julia-compat" ,julia-compat) | |
470 | ("julia-finitedifference" ,julia-finitedifferences))) | |
471 | (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") | |
472 | (synopsis "Common utilities used by downstream automatic differentiation tools") | |
473 | (description "This package is designed to help in testing | |
474 | @code{ChainRulesCore.frule} and @code{ChainRulesCore.rrule} methods. The main | |
475 | entry points are @code{ChainRulesTestUtils.frule_test}, | |
476 | @code{ChainRulesTestUtils.rrule_test}, and | |
477 | @code{ChainRulesTestUtils.test_scalar}. Currently this is done via testing the | |
478 | rules against numerical differentiation (using @code{FiniteDifferences.jl}). | |
479 | ||
480 | @code{ChainRulesTestUtils.jl} is separated from @code{ChainRulesCore.jl} so that it | |
481 | can be a test-only dependency, allowing it to have potentially heavy | |
482 | dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.") | |
483 | (license license:expat))) | |
484 | ||
13a8b866 | 485 | (define-public julia-colors |
486 | (package | |
487 | (name "julia-colors") | |
d9856912 | 488 | (version "0.12.8") |
13a8b866 | 489 | (source |
490 | (origin | |
491 | (method git-fetch) | |
492 | (uri (git-reference | |
493 | (url "https://github.com/JuliaGraphics/Colors.jl") | |
494 | (commit (string-append "v" version)))) | |
495 | (file-name (git-file-name name version)) | |
496 | (sha256 | |
d9856912 | 497 | (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3")))) |
13a8b866 | 498 | (build-system julia-build-system) |
499 | (propagated-inputs | |
500 | `(("julia-colortypes" ,julia-colortypes) | |
501 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
502 | ("julia-reexport" ,julia-reexport))) | |
503 | (home-page "https://github.com/JuliaGraphics/Colors.jl") | |
504 | (synopsis "Tools for dealing with color") | |
505 | (description "This package provides a wide array of functions for dealing | |
506 | with color. This includes conversion between colorspaces, measuring distance | |
507 | between colors, simulating color blindness, parsing colors, and generating | |
508 | color scales for graphics.") | |
509 | (license license:expat))) | |
510 | ||
a033f810 EF |
511 | (define-public julia-colorschemes |
512 | (package | |
513 | (name "julia-colorschemes") | |
514 | (version "3.12.1") | |
515 | (source | |
516 | (origin | |
517 | (method git-fetch) | |
518 | (uri (git-reference | |
519 | (url "https://github.com/JuliaGraphics/ColorSchemes.jl") | |
520 | (commit (string-append "v" version)))) | |
521 | (file-name (git-file-name name version)) | |
522 | (sha256 | |
523 | (base32 | |
524 | "08k39hbdf3jn0001f7qxa99xvagrnh9764911hs6cmxkvp061sa4")))) | |
525 | (build-system julia-build-system) | |
526 | (propagated-inputs | |
527 | `(("julia-colors" ,julia-colors) | |
528 | ("julia-colortypes" ,julia-colortypes) | |
529 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
530 | ("julia-staticarrays" ,julia-staticarrays))) | |
531 | (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl") | |
532 | (synopsis "Colorschemes, colormaps, gradients, and palettes") | |
533 | (description "This package provides a collection of colorschemes.") | |
534 | (license license:expat))) | |
535 | ||
9b8b132e | 536 | (define-public julia-colortypes |
537 | (package | |
538 | (name "julia-colortypes") | |
2211f3af | 539 | (version "0.11.0") |
9b8b132e | 540 | (source |
541 | (origin | |
542 | (method git-fetch) | |
543 | (uri (git-reference | |
544 | (url "https://github.com/JuliaGraphics/ColorTypes.jl") | |
545 | (commit (string-append "v" version)))) | |
546 | (file-name (git-file-name name version)) | |
547 | (sha256 | |
2211f3af | 548 | (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih")))) |
9b8b132e | 549 | (arguments |
550 | '(#:tests? #f)) ;require Documenter, not packaged yet | |
551 | (build-system julia-build-system) | |
552 | (propagated-inputs | |
553 | `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) | |
554 | (home-page "https://github.com/JuliaGraphics/ColorTypes.jl") | |
555 | (synopsis "Basic color types and constructor") | |
556 | (description "This minimalistic package serves as the foundation for | |
557 | working with colors in Julia. It defines basic color types and their | |
558 | constructors, and sets up traits and show methods to make them easier to work | |
559 | with.") | |
560 | (license license:expat))) | |
561 | ||
495df0b0 EF |
562 | (define-public julia-colorvectorspace |
563 | (package | |
564 | (name "julia-colorvectorspace") | |
565 | (version "0.9.5") | |
566 | (source | |
567 | (origin | |
568 | (method git-fetch) | |
569 | (uri (git-reference | |
570 | (url "https://github.com/JuliaGraphics/ColorVectorSpace.jl") | |
571 | (commit (string-append "v" version)))) | |
572 | (file-name (git-file-name name version)) | |
573 | (sha256 | |
574 | (base32 "1gx4k1bvf6lkzxphnvpkw857ihrkifhb68yvsj889k9pf1vda3fq")))) | |
575 | (build-system julia-build-system) | |
576 | (propagated-inputs | |
577 | `(("julia-colortypes" ,julia-colortypes) | |
578 | ("julia-specialfunctions" ,julia-specialfunctions) | |
579 | ("julia-tensorcore" ,julia-tensorcore))) | |
580 | (native-inputs | |
581 | `(("julia-colors" ,julia-colors))) | |
582 | (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl") | |
583 | (synopsis "Treat colors as n-vectors for the purposes of arithmetic") | |
584 | (description "This package is an add-on to @code{ColorTypes.jl} and provides | |
585 | fast mathematical operations for objects with types such as RGB and Gray. | |
586 | Specifically, with this package both grayscale and RGB colors are treated as if | |
587 | they are points in a normed vector space.") | |
588 | (license license:expat))) | |
589 | ||
2405fcb4 EF |
590 | (define-public julia-combinatorics |
591 | (package | |
592 | (name "julia-combinatorics") | |
593 | (version "1.0.2") | |
594 | (source | |
595 | (origin | |
596 | (method git-fetch) | |
597 | (uri (git-reference | |
598 | (url "https://github.com/JuliaMath/Combinatorics.jl") | |
599 | (commit (string-append "v" version)))) | |
600 | (file-name (git-file-name name version)) | |
601 | (sha256 | |
602 | (base32 "0gafqkqi874zfm9h99akw9q95lk3ih5gip2h8p12fj9h7rvyf4j5")))) | |
603 | (build-system julia-build-system) | |
604 | (home-page "https://github.com/JuliaMath/Combinatorics.jl") | |
605 | (synopsis "Combinatorics library for Julia") | |
606 | (description "This package provides a combinatorics library for Julia, | |
607 | focusing mostly (as of now) on enumerative combinatorics and permutations.") | |
608 | (license license:expat))) | |
609 | ||
2ca38ee4 | 610 | (define-public julia-commonsubexpressions |
611 | (package | |
612 | (name "julia-commonsubexpressions") | |
613 | (version "0.3.0") | |
614 | (source | |
615 | (origin | |
616 | (method git-fetch) | |
617 | (uri (git-reference | |
618 | (url "https://github.com/rdeits/CommonSubexpressions.jl") | |
619 | (commit (string-append "v" version)))) | |
620 | (file-name (git-file-name name version)) | |
621 | (sha256 | |
622 | (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay")))) | |
623 | (build-system julia-build-system) | |
624 | (propagated-inputs | |
625 | `(("julia-macrotools" ,julia-macrotools))) | |
626 | (home-page "https://github.com/rdeits/CommonSubexpressions.jl") | |
f233bb17 LC |
627 | (synopsis "@code{@@cse} macro for Julia") |
628 | (description "This package provides the @code{@@cse} macro, which performs | |
2ca38ee4 | 629 | common subexpression elimination.") |
630 | (license license:expat))) | |
631 | ||
a1315b7f | 632 | (define-public julia-compat |
633 | (package | |
634 | (name "julia-compat") | |
272ca183 | 635 | (version "3.30.0") |
a1315b7f | 636 | (source |
637 | (origin | |
638 | (method git-fetch) | |
639 | (uri (git-reference | |
640 | (url "https://github.com/JuliaLang/Compat.jl") | |
641 | (commit (string-append "v" version)))) | |
54721e7e | 642 | (file-name (git-file-name name version)) |
a1315b7f | 643 | (sha256 |
272ca183 | 644 | (base32 "1qs6fm58dicdjy69qk5p0ndj2b7qsvg7rmydq7igvrvirad55v56")))) |
a1315b7f | 645 | (build-system julia-build-system) |
646 | (home-page "https://github.com/JuliaLang/Compat.jl") | |
647 | (synopsis "Compatibility across Julia versions") | |
648 | (description "The Compat package is designed to ease interoperability | |
649 | between older and newer versions of the Julia language. The Compat package | |
650 | provides a macro that lets you use the latest syntax in a backwards-compatible | |
651 | way.") | |
652 | (license license:expat))) | |
eccd448c | 653 | |
35044d3e | 654 | (define-public julia-constructionbase |
b694fd4b EF |
655 | (package |
656 | (name "julia-constructionbase") | |
657 | (version "1.2.1") | |
658 | (source | |
659 | (origin | |
660 | (method git-fetch) | |
661 | (uri (git-reference | |
662 | (url "https://github.com/JuliaObjects/ConstructionBase.jl") | |
663 | (commit (string-append "v" version)))) | |
664 | (file-name (git-file-name name version)) | |
665 | (sha256 | |
666 | (base32 "1bmx5c5z9jxmyf2xjwwl5lhs9czmwq4isl0bkr78fak4j8brqr4n")))) | |
667 | (build-system julia-build-system) | |
668 | (home-page "https://juliaobjects.github.io/ConstructionBase.jl/dev/") | |
669 | (synopsis "Primitive functions for construction of objects") | |
670 | (description "This very lightweight package provides primitive functions | |
35044d3e | 671 | for construction of objects.") |
b694fd4b | 672 | (license license:expat))) |
35044d3e | 673 | |
9e21a2a1 EF |
674 | (define-public julia-coordinatetransformations |
675 | (package | |
676 | (name "julia-coordinatetransformations") | |
677 | (version "0.6.1") | |
678 | (source | |
679 | (origin | |
680 | (method git-fetch) | |
681 | (uri (git-reference | |
682 | (url "https://github.com/JuliaGeometry/CoordinateTransformations.jl") | |
683 | (commit (string-append "v" version)))) | |
684 | (file-name (git-file-name name version)) | |
685 | (sha256 | |
686 | (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d")))) | |
687 | (build-system julia-build-system) | |
688 | (arguments | |
689 | `(#:tests? #f)) ; Documenter.jl not packaged yet. | |
690 | (propagated-inputs | |
691 | `(("julia-staticarrays" ,julia-staticarrays))) | |
692 | ;(native-inputs | |
693 | ; `(("julia-documenter" ,julia-documenter) | |
694 | ; ("julia-forwarddiff" ,julia-forwarddiff) | |
695 | ; ("julia-unitful" ,julia-unitful))) | |
696 | (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl") | |
697 | (synopsis "Coordinate transformations in Julia") | |
698 | (description "@code{CoordinateTransformations} is a Julia package to manage | |
699 | simple or complex networks of coordinate system transformations. | |
700 | Transformations can be easily applied, inverted, composed, and differentiated | |
701 | (both with respect to the input coordinates and with respect to transformation | |
702 | parameters such as rotation angle). Transformations are designed to be | |
703 | light-weight and efficient enough for, e.g., real-time graphical applications, | |
704 | while support for both explicit and automatic differentiation makes it easy to | |
705 | perform optimization and therefore ideal for computer vision applications such | |
706 | as SLAM (simultaneous localization and mapping).") | |
707 | (license license:expat))) | |
708 | ||
a9db2df4 EF |
709 | (define-public julia-crayons |
710 | (package | |
711 | (name "julia-crayons") | |
712 | (version "4.0.4") | |
713 | (source | |
714 | (origin | |
715 | (method git-fetch) | |
716 | (uri (git-reference | |
717 | (url "https://github.com/KristofferC/Crayons.jl") | |
718 | (commit (string-append "v" version)))) | |
719 | (file-name (git-file-name name version)) | |
720 | (sha256 | |
721 | (base32 "0v3zhjlnb2914bxcj4myl8pgb7m31p77aj2k1bckmqs96jdph10z")))) | |
722 | (build-system julia-build-system) | |
723 | (home-page "https://github.com/KristofferC/Crayons.jl") | |
724 | (synopsis "Colored and styled strings for terminals") | |
725 | (description "Crayons is a package that makes it simple to write strings in | |
726 | different colors and styles to terminals. It supports the 16 system colors, | |
727 | both the 256 color and 24 bit true color extensions, and the different text | |
728 | styles available to terminals.") | |
729 | (license license:expat))) | |
730 | ||
ccbf9c45 EF |
731 | (define-public julia-dataapi |
732 | (package | |
733 | (name "julia-dataapi") | |
734 | (version "1.6.0") | |
735 | (source | |
736 | (origin | |
737 | (method git-fetch) | |
738 | (uri (git-reference | |
739 | (url "https://github.com/JuliaData/DataAPI.jl") | |
740 | (commit (string-append "v" version)))) | |
741 | (file-name (git-file-name name version)) | |
742 | (sha256 | |
743 | (base32 "14sfvkz169zcbap3gdwpj16qsap783h86fd07flfxk822abam11w")))) | |
744 | (build-system julia-build-system) | |
745 | (home-page "https://github.com/JuliaData/DataAPI.jl") | |
746 | (synopsis "Data-focused namespace for packages to share functions") | |
747 | (description "This package provides a namespace for data-related generic | |
748 | function definitions to solve the optional dependency problem; packages wishing | |
749 | to share and/or extend functions can avoid depending directly on each other by | |
750 | moving the function definition to DataAPI.jl and each package taking a | |
751 | dependency on it.") | |
752 | (license license:expat))) | |
753 | ||
6545cef5 | 754 | (define-public julia-datastructures |
755 | (package | |
756 | (name "julia-datastructures") | |
757 | (version "0.18.9") | |
758 | (source | |
759 | (origin | |
760 | (method git-fetch) | |
761 | (uri (git-reference | |
762 | (url "https://github.com/JuliaCollections/DataStructures.jl") | |
763 | (commit (string-append "v" version)))) | |
764 | (file-name (git-file-name name version)) | |
765 | (sha256 | |
766 | (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l")))) | |
767 | (propagated-inputs | |
768 | `(("julia-compat" ,julia-compat) | |
769 | ("julia-orderedcollections" ,julia-orderedcollections))) | |
770 | (build-system julia-build-system) | |
771 | (home-page "https://github.com/JuliaCollections/DataStructures.jl") | |
772 | (synopsis "Julia module providing different data structures") | |
773 | (description "This package implements a variety of data structures, | |
774 | including, @code{CircularBuffer}, @code{Queue}, @code{Stack}, | |
775 | @code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.") | |
776 | (license license:expat))) | |
777 | ||
21df298e EF |
778 | (define-public julia-datavalueinterfaces |
779 | (package | |
780 | (name "julia-datavalueinterfaces") | |
781 | (version "1.0.0") | |
782 | (source | |
783 | (origin | |
784 | (method git-fetch) | |
785 | (uri (git-reference | |
786 | (url "https://github.com/queryverse/DataValueInterfaces.jl") | |
787 | (commit (string-append "v" version)))) | |
788 | (file-name (git-file-name name version)) | |
789 | (sha256 | |
790 | (base32 "0g2wj6q7jj956nx6g7dk8x7w1c4l2xcmnr1kq5x8s8fild9kslg8")))) | |
791 | (build-system julia-build-system) | |
792 | (home-page "https://github.com/queryverse/DataValueInterfaces.jl") | |
793 | (synopsis "Interface for DataValues.jl") | |
794 | (description "This package allows a few \"forward\" definitions for the | |
795 | @code{DataValues.jl} package that other packages can utilize for integration | |
796 | without having to take direct dependencies.") | |
797 | (license license:expat))) | |
798 | ||
e886181b EF |
799 | (define-public julia-datavalues |
800 | (package | |
801 | (name "julia-datavalues") | |
802 | (version "0.4.13") | |
803 | (source | |
804 | (origin | |
805 | (method git-fetch) | |
806 | (uri (git-reference | |
807 | (url "https://github.com/queryverse/DataValues.jl") | |
808 | (commit (string-append "v" version)))) | |
809 | (file-name (git-file-name name version)) | |
810 | (sha256 | |
811 | (base32 "15j3hrqq6nazn533bfsvg32xznacbzsl303j1qs48av59ppnvhhv")))) | |
812 | (build-system julia-build-system) | |
813 | (arguments | |
814 | `(#:phases | |
815 | (modify-phases %standard-phases | |
816 | (add-after 'unpack 'skip-known-failing-tests | |
817 | (lambda _ | |
818 | ;; See upstream report: | |
819 | ;; https://github.com/queryverse/DataValues.jl/issues/83 | |
820 | (substitute* "test/array/test_reduce.jl" | |
821 | ((".*DataValue\\(mapreduce.*") "") | |
822 | ((".*DataValue\\(method\\(f.*") "")) | |
823 | #t))))) | |
824 | (propagated-inputs | |
825 | `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces))) | |
826 | (home-page "https://github.com/queryverse/DataValues.jl") | |
827 | (synopsis "Missing values for Julia") | |
828 | (description "This package provides the type @code{DataValue} that is used | |
829 | to represent missing data.") | |
830 | (license license:expat))) | |
831 | ||
52811a76 EF |
832 | (define-public julia-deepdiffs |
833 | (package | |
834 | (name "julia-deepdiffs") | |
835 | (version "1.2.0") | |
836 | (source | |
837 | (origin | |
838 | (method git-fetch) | |
839 | (uri (git-reference | |
840 | (url "https://github.com/ssfrr/DeepDiffs.jl") | |
841 | (commit (string-append "v" version)))) | |
842 | (file-name (git-file-name name version)) | |
843 | (sha256 | |
844 | (base32 "1gsbxb1d67g05h5bvzz3swdfih6404jrydy724a8dvbdgqvm3sds")))) | |
845 | (build-system julia-build-system) | |
846 | (home-page "https://github.com/ssfrr/DeepDiffs.jl") | |
847 | (synopsis "Compute and pretty-print diffs for data structures") | |
848 | (description "@code{DeepDiffs.jl} provides the @code{deepdiff} function, | |
849 | which finds and displays differences (diffs) between Julia data structures. It | |
850 | supports @code{Vectors}, @code{Dicts}, and @code{String}s. When diffing | |
851 | dictionaries where values associated with a particular key may change, | |
852 | @code{deepdiff} will recurse into value to provide a more detailed diff.") | |
853 | (license license:expat))) | |
854 | ||
f74305a0 EF |
855 | (define-public julia-dictionaries |
856 | (package | |
857 | (name "julia-dictionaries") | |
858 | (version "0.3.8") | |
859 | (source | |
860 | (origin | |
861 | (method git-fetch) | |
862 | (uri (git-reference | |
863 | (url "https://github.com/andyferris/Dictionaries.jl") | |
864 | (commit (string-append "v" version)))) | |
865 | (file-name (git-file-name name version)) | |
866 | (sha256 | |
867 | (base32 "1j88f6qa5hqm64n5q3jy08a02gwp7by401s03n5x7575p58iqqh2")))) | |
868 | (build-system julia-build-system) | |
869 | (propagated-inputs | |
870 | `(("julia-indexing" ,julia-indexing))) | |
871 | (home-page "https://github.com/andyferris/Dictionaries.jl") | |
872 | (synopsis "Alternative interface for dictionaries in Julia") | |
873 | (description "This package provides an alternative interface for | |
874 | dictionaries in Julia, for improved productivity and performance.") | |
875 | (license license:expat))) | |
876 | ||
6ee82f63 EF |
877 | (define-public julia-distances |
878 | (package | |
879 | (name "julia-distances") | |
880 | (version "0.10.3") | |
881 | (source | |
882 | (origin | |
883 | (method git-fetch) | |
884 | (uri (git-reference | |
885 | (url "https://github.com/JuliaStats/Distances.jl") | |
886 | (commit (string-append "v" version)))) | |
887 | (file-name (git-file-name name version)) | |
888 | (sha256 | |
889 | (base32 "1yqd9wg4z15k42mrp4y14j2x0sq7yrjhm5zpqklrw6w6j1c367ig")))) | |
890 | (build-system julia-build-system) | |
891 | (arguments | |
892 | `(#:phases | |
893 | (modify-phases %standard-phases | |
894 | (add-after 'unpack 'skip-flakey-tests | |
895 | (lambda _ | |
896 | (substitute* "test/test_dists.jl" | |
897 | (("test dyz ≥") "test_nowarn dyz ≥") | |
898 | (("test dist\\(y, x") "test_nowarn dist(y, x") | |
899 | (("test dist\\(z, x") "test_nowarn dist(z, x"))))))) | |
900 | (propagated-inputs | |
901 | `(("julia-statsapi" ,julia-statsapi))) | |
902 | (native-inputs | |
903 | `(("julia-offsetarrays" ,julia-offsetarrays) | |
904 | ("julia-unitful" ,julia-unitful))) | |
905 | (home-page "https://github.com/JuliaStats/Distances.jl") | |
906 | (synopsis "Julia package for evaluating distances (metrics) between vectors") | |
907 | (description "A Julia package for evaluating distances(metrics) between | |
908 | vectors. This package also provides optimized functions to compute column-wise | |
909 | and pairwise distances, which are often substantially faster than a | |
910 | straightforward loop implementation.") | |
911 | (license license:expat))) | |
912 | ||
9e77eb58 EF |
913 | (define-public julia-docstringextensions |
914 | (package | |
915 | (name "julia-docstringextensions") | |
96ebbd45 | 916 | (version "0.8.5") |
9e77eb58 EF |
917 | (source |
918 | (origin | |
919 | (method git-fetch) | |
920 | (uri (git-reference | |
921 | (url "https://github.com/JuliaDocs/DocStringExtensions.jl") | |
922 | (commit (string-append "v" version)))) | |
923 | (file-name (git-file-name name version)) | |
924 | (sha256 | |
96ebbd45 | 925 | (base32 "0fy4kfnfacyfmlly6nqxn77dk2gqw80b69zb4m1i0i39zv3cpqfb")))) |
9e77eb58 EF |
926 | (build-system julia-build-system) |
927 | (home-page "https://juliadocs.github.io/DocStringExtensions.jl/latest/") | |
928 | (synopsis "Extensions for Julia's docsystem") | |
929 | (description "This package provides a collection of useful extensions for | |
930 | Julia's built-in docsystem. These are features that are not yet mature enough | |
931 | to be considered for inclusion in Base, or that have sufficiently niche use | |
932 | cases that including them with the default Julia installation is not seen as | |
933 | valuable enough at this time.") | |
934 | (license license:expat))) | |
935 | ||
7bf791ee | 936 | (define-public julia-diffresults |
937 | (package | |
938 | (name "julia-diffresults") | |
939 | (version "1.0.3") | |
940 | (source | |
941 | (origin | |
942 | (method git-fetch) | |
943 | (uri (git-reference | |
944 | (url "https://github.com/JuliaDiff/DiffResults.jl") | |
945 | (commit (string-append "v" version)))) | |
946 | (file-name (git-file-name name version)) | |
947 | (sha256 | |
948 | (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v")))) | |
949 | (propagated-inputs | |
950 | `(("julia-staticarrays" ,julia-staticarrays))) | |
951 | (build-system julia-build-system) | |
952 | (home-page "https://github.com/JuliaDiff/DiffResults.jl") | |
953 | (synopsis "In-place differentiation methods of primal values at multi-order") | |
954 | (description "This package provides the @code{DiffResult} type, which can | |
955 | be passed to in-place differentiation methods instead of an output buffer.") | |
956 | (license license:expat))) | |
957 | ||
33e5152a | 958 | (define-public julia-diffrules |
959 | (package | |
960 | (name "julia-diffrules") | |
961 | (version "1.0.2") | |
962 | (source | |
963 | (origin | |
964 | (method git-fetch) | |
965 | (uri (git-reference | |
966 | (url "https://github.com/JuliaDiff/DiffRules.jl") | |
967 | (commit (string-append "v" version)))) | |
968 | (file-name (git-file-name name version)) | |
969 | (sha256 | |
970 | (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl")))) | |
971 | (propagated-inputs | |
972 | `(("julia-nanmath" ,julia-nanmath) | |
973 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
974 | (build-system julia-build-system) | |
975 | (home-page "https://github.com/JuliaDiff/DiffRules.jl") | |
976 | (synopsis "Primitive differentiation rules") | |
977 | (description "This package provides primitive differentiation rules that | |
978 | can be composed via various formulations of the chain rule. Using | |
979 | @code{DiffRules}, new differentiation rules can defined, query whether or not | |
980 | a given rule exists, and symbolically apply rules to simple Julia expressions.") | |
981 | (license license:expat))) | |
982 | ||
df4be2e9 | 983 | (define-public julia-difftests |
984 | (package | |
985 | (name "julia-difftests") | |
986 | (version "0.1.1") | |
987 | (source | |
988 | (origin | |
989 | (method git-fetch) | |
990 | (uri (git-reference | |
991 | (url "https://github.com/JuliaDiff/DiffTests.jl") | |
992 | (commit (string-append "v" version)))) | |
993 | (file-name (git-file-name name version)) | |
994 | (sha256 | |
995 | (base32 "1rxpnd5zi3pxgdd38l5jm2sxc3q6p7g57fqgll2dsiin07y3my57")))) | |
996 | (build-system julia-build-system) | |
997 | (home-page "https://github.com/JuliaDiff/DiffTests.jl") | |
998 | (synopsis "Common test functions for differentiation tools") | |
999 | (description "This package contains a common suite of test functions for | |
1000 | stressing the robustness of differentiation tools.") | |
1001 | (license license:expat))) | |
ae131820 EF |
1002 | |
1003 | (define-public julia-dualnumbers | |
1004 | (package | |
1005 | (name "julia-dualnumbers") | |
1006 | (version "0.6.5") | |
1007 | (source | |
1008 | (origin | |
1009 | (method git-fetch) | |
1010 | (uri (git-reference | |
1011 | (url "https://github.com/JuliaDiff/DualNumbers.jl") | |
1012 | (commit (string-append "v" version)))) | |
1013 | (file-name (git-file-name name version)) | |
1014 | (sha256 | |
1015 | (base32 "05vr5wbzqpchnb96b3pmn67x196mbfnkv7r9bdlz3gm56if4awk5")))) | |
1016 | (build-system julia-build-system) | |
1017 | (arguments | |
1018 | `(#:phases | |
1019 | (modify-phases %standard-phases | |
1020 | (add-after 'unpack 'adjust-test-suite | |
1021 | (lambda _ | |
1022 | (substitute* "test/runtests.jl" | |
1023 | ;; Seems to not play nicely with SpecialFunctions | |
1024 | ((".*isempty.*") ""))))))) | |
1025 | (propagated-inputs | |
1026 | `(("julia-calculus" ,julia-calculus) | |
1027 | ("julia-nanmath" ,julia-nanmath) | |
1028 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
1029 | (home-page "https://github.com/JuliaDiff/DualNumbers.jl") | |
1030 | (synopsis "Represent dual numbers and for perform dual algebra") | |
1031 | (description "The @code{DualNumbers} Julia package defines the @code{Dual} | |
1032 | type to represent dual numbers, and supports standard mathematical operations on | |
1033 | them. Conversions and promotions are defined to allow performing operations on | |
1034 | combinations of dual numbers with predefined Julia numeric types.") | |
1035 | (license license:expat))) | |
df4be2e9 | 1036 | |
25ece40e EF |
1037 | (define-public julia-ellipsisnotation |
1038 | (package | |
1039 | (name "julia-ellipsisnotation") | |
1040 | (version "1.1.0") | |
1041 | (source | |
1042 | (origin | |
1043 | (method git-fetch) | |
1044 | (uri (git-reference | |
1045 | (url "https://github.com/ChrisRackauckas/EllipsisNotation.jl") | |
1046 | (commit (string-append "v" version)))) | |
1047 | (file-name (git-file-name name version)) | |
1048 | (sha256 | |
1049 | (base32 "0py46kxl702r8pw3v7x4cqllf7yc91b0dr7vb60xh2qi7d6y3jc7")))) | |
1050 | (build-system julia-build-system) | |
1051 | (propagated-inputs | |
1052 | `(("julia-arrayinterface" ,julia-arrayinterface))) | |
1053 | (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl") | |
1054 | (synopsis "Elipsis notation implementation") | |
1055 | (description "This implements the notation @code{..} for indexing arrays. | |
1056 | It's similar to the Python @code{...} in that it means \"all of the columns | |
1057 | before (or after)\".") | |
1058 | (license license:expat))) | |
1059 | ||
fffb1e72 | 1060 | (define-public julia-example |
1061 | (let ((commit "f968c69dea24f851d0c7e686db23fa55826b5388")) | |
1062 | (package | |
1063 | (name "julia-example") | |
1064 | (version "0.5.4") ;tag not created upstream | |
1065 | (source | |
1066 | (origin | |
1067 | (method git-fetch) | |
1068 | (uri (git-reference | |
1069 | (url "https://github.com/JuliaLang/Example.jl") | |
1070 | (commit commit))) | |
1071 | (file-name (git-file-name name version)) | |
1072 | (sha256 | |
1073 | (base32 "1v3z0d6gh6wfbypffy9m9rhh36px6fm5wjzq0y6rbmc95r0qpqlx")))) | |
1074 | (build-system julia-build-system) | |
1075 | (home-page "https://github.com/JuliaLang/Example.jl") | |
1076 | (synopsis "Module providing examples") | |
1077 | (description "This package provides various examples.") | |
1078 | (license license:expat)))) | |
1079 | ||
73b6f78c EF |
1080 | (define-public julia-exprtools |
1081 | (package | |
1082 | (name "julia-exprtools") | |
1083 | (version "0.1.3") | |
1084 | (source | |
1085 | (origin | |
1086 | (method git-fetch) | |
1087 | (uri (git-reference | |
1088 | (url "https://github.com/invenia/ExprTools.jl") | |
1089 | (commit (string-append "v" version)))) | |
1090 | (file-name (git-file-name name version)) | |
1091 | (sha256 | |
1092 | (base32 "1lwxi9fx9farf1jdv42gv43xs3f3i3js2xnvr5gf6d0xfx0g6b6a")))) | |
1093 | (build-system julia-build-system) | |
1094 | (home-page "https://github.com/invenia/ExprTools.jl") | |
1095 | (synopsis "Light-weight expression manipulation tools") | |
1096 | (description "@code{ExprTools} provides tooling for working with Julia | |
1097 | expressions during metaprogramming. This package aims to provide light-weight | |
1098 | performant tooling without requiring additional package dependencies.") | |
1099 | (license license:expat))) | |
1100 | ||
0c1b3444 EF |
1101 | (define-public julia-ffmpeg |
1102 | (package | |
1103 | (name "julia-ffmpeg") | |
bef5db80 | 1104 | (version "0.4.1") |
0c1b3444 EF |
1105 | (source |
1106 | (origin | |
1107 | (method git-fetch) | |
1108 | (uri (git-reference | |
1109 | (url "https://github.com/JuliaIO/FFMPEG.jl") | |
1110 | (commit (string-append "v" version)))) | |
1111 | (file-name (git-file-name name version)) | |
1112 | (sha256 | |
bef5db80 | 1113 | (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b")))) |
0c1b3444 EF |
1114 | (build-system julia-build-system) |
1115 | (propagated-inputs | |
1116 | `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll) | |
1117 | ("julia-x264-jll" ,julia-x264-jll))) | |
1118 | (home-page "https://github.com/JuliaIO/FFMPEG.jl") | |
1119 | (synopsis "Julia Package for ffmpeg") | |
1120 | (description "This package is made to be included into packages that just | |
1121 | need the ffmpeg binaries + executables, and don't want the overhead of | |
1122 | @code{VideoIO.jl}.") | |
1123 | (license license:expat))) | |
1124 | ||
9810337b EF |
1125 | (define-public julia-fileio |
1126 | (package | |
1127 | (name "julia-fileio") | |
1128 | (version "1.9.1") | |
1129 | (source | |
1130 | (origin | |
1131 | (method git-fetch) | |
1132 | (uri (git-reference | |
1133 | (url "https://github.com/JuliaIO/FileIO.jl") | |
1134 | (commit (string-append "v" version)))) | |
1135 | (file-name (git-file-name name version)) | |
1136 | (sha256 | |
1137 | (base32 "1b18x43i737g5q41n9818xbnc2pgd98q1m6yw3h29yri0clg4gfx")))) | |
1138 | (build-system julia-build-system) | |
1139 | (arguments | |
1140 | `(#:phases | |
1141 | (modify-phases %standard-phases | |
1142 | (delete 'reset-gzip-timestamps) | |
1143 | (add-after 'unpack 'skip-network-tests | |
1144 | (lambda _ | |
1145 | ;; These tests try to download audio/video files. | |
1146 | (substitute* "test/query.jl" | |
1147 | (("testset.*(MP4|OGG|MATROSKA).*" all) | |
1148 | (string-append all "return\n"))) | |
1149 | (substitute* "test/loadsave.jl" | |
1150 | (("testset.*CSVFiles.*" all) | |
1151 | (string-append all "return\n"))) | |
1152 | ;; This test tries to download a Julia package. | |
1153 | (substitute* "test/error_handling.jl" | |
1154 | (("testset.*Not installed.*" all) | |
1155 | (string-append all "return\n"))) | |
1156 | ;; This test tries to write to the store. | |
1157 | ;; (Error says can't find User 0) | |
1158 | (substitute* "test/runtests.jl" | |
1159 | ((".*test_mimesave.*") ""))))))) | |
1160 | (propagated-inputs | |
1161 | `(("julia-requires" ,julia-requires))) | |
1162 | (native-inputs | |
1163 | `(("julia-colortypes" ,julia-colortypes) | |
1164 | ("julia-filepathsbase" ,julia-filepathsbase) | |
1165 | ("julia-http" ,julia-http))) | |
1166 | (home-page "https://github.com/JuliaIO/FileIO.jl") | |
1167 | (synopsis "Main Package for IO, loading all different kind of files") | |
1168 | (description "@code{FileIO} aims to provide a common framework for detecting | |
1169 | file formats and dispatching to appropriate readers/writers. The two core | |
1170 | functions in this package are called @code{load} and @code{save}, and offer | |
1171 | high-level support for formatted files (in contrast with Julia's low-level | |
1172 | @code{read} and @code{write}).") | |
1173 | (license license:expat))) | |
1174 | ||
08ad8d69 EF |
1175 | (define-public julia-filepathsbase |
1176 | (package | |
1177 | (name "julia-filepathsbase") | |
1178 | (version "0.9.10") | |
1179 | (source | |
1180 | (origin | |
1181 | (method git-fetch) | |
1182 | (uri (git-reference | |
1183 | (url "https://github.com/rofinn/FilePathsBase.jl") | |
1184 | (commit (string-append "v" version)))) | |
1185 | (file-name (git-file-name name version)) | |
1186 | (sha256 | |
1187 | (base32 "136wm4ik6isrdanmpi4gdr1qw0qhr15i925qzjxbawk5hnyzwng9")))) | |
1188 | (build-system julia-build-system) | |
1189 | (arguments | |
1190 | `(#:tests? #f)) ; Cycle with JLSO.jl | |
1191 | (home-page "https://github.com/rofinn/FilePathsBase.jl") | |
1192 | (synopsis "Filesystem path types in Julia") | |
1193 | (description "@code{FilePathsBase.jl} provides a type based approach to | |
1194 | working with filesystem paths in Julia.") | |
1195 | (license license:expat))) | |
1196 | ||
a0d3a73f | 1197 | (define-public julia-fillarrays |
1198 | (package | |
1199 | (name "julia-fillarrays") | |
1200 | (version "0.11.7") | |
1201 | (source | |
1202 | (origin | |
1203 | (method git-fetch) | |
1204 | (uri (git-reference | |
1205 | (url "https://github.com/JuliaArrays/FillArrays.jl") | |
1206 | (commit (string-append "v" version)))) | |
1207 | (file-name (git-file-name name version)) | |
1208 | (sha256 | |
1209 | (base32 "1q1qn9pb5dmppddnmf8gggdqyvivqh3ffvbblhn37smcf9r5sy7d")))) | |
1210 | (build-system julia-build-system) | |
1211 | (inputs ;required by tests | |
1212 | `(("julia-staticarrays" ,julia-staticarrays))) | |
1213 | (home-page "https://github.com/JuliaArrays/FillArrays.jl") | |
1214 | (synopsis "Lazy matrix representation") | |
239f0259 | 1215 | (description "This package lazily represents matrices filled with |
a0d3a73f | 1216 | a single entry, as well as identity matrices. This package exports the |
1217 | following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, | |
1218 | @code{Trues} and @code{Falses}.") | |
1219 | (license license:expat))) | |
1220 | ||
9f9d887e EF |
1221 | (define-public julia-finitediff |
1222 | (package | |
1223 | (name "julia-finitediff") | |
1224 | (version "2.8.0") | |
1225 | (source | |
1226 | (origin | |
1227 | (method git-fetch) | |
1228 | (uri (git-reference | |
1229 | (url "https://github.com/JuliaDiff/FiniteDiff.jl") | |
1230 | (commit (string-append "v" version)))) | |
1231 | (file-name (git-file-name name version)) | |
1232 | (sha256 | |
1233 | (base32 "0ndazn02wn8ddwgjh1i32y7pbaqpw06f42ccilz5ya78cyrjhq2m")))) | |
1234 | (build-system julia-build-system) | |
1235 | (arguments | |
1236 | `(#:phases | |
1237 | (modify-phases %standard-phases | |
1238 | (add-before 'check 'pre-check | |
1239 | (lambda _ | |
1240 | ;; We don't want to run all the tests; the Downstream tests | |
1241 | ;; try to download the package registry. | |
1242 | (setenv "GROUP" "Core") | |
1243 | #t))))) | |
1244 | (propagated-inputs | |
1245 | `(("julia-arrayinterface" ,julia-arrayinterface) | |
1246 | ("julia-requires" ,julia-requires) | |
1247 | ("julia-staticarrays" ,julia-staticarrays))) | |
1248 | (native-inputs | |
1249 | `(("julia-bandedmatrices" ,julia-bandedmatrices) | |
1250 | ("julia-blockbandedmatrices" ,julia-blockbandedmatrices) | |
1251 | ("julia-safetestsets" ,julia-safetestsets))) | |
1252 | (home-page "https://github.com/JuliaDiff/FiniteDiff.jl") | |
1253 | (synopsis "Calculations of gradients, Jacobians, and Hessians") | |
1254 | (description "This package is for calculating derivatives, gradients, | |
1255 | Jacobians, Hessians, etc. numerically. This library is for maximizing speed | |
1256 | while giving a usable interface to end users in a way that specializes on array | |
1257 | types and sparsity.") | |
1258 | (license license:expat))) | |
1259 | ||
f6c5a898 | 1260 | (define-public julia-finitedifferences |
1261 | (package | |
1262 | (name "julia-finitedifferences") | |
7638ce23 | 1263 | (version "0.12.6") |
f6c5a898 | 1264 | (source |
1265 | (origin | |
1266 | (method git-fetch) | |
1267 | (uri (git-reference | |
1268 | (url "https://github.com/JuliaDiff/FiniteDifferences.jl") | |
1269 | (commit (string-append "v" version)))) | |
1270 | (file-name (git-file-name name version)) | |
1271 | (sha256 | |
7638ce23 | 1272 | (base32 "0kg8snnspn48i2rr99mwy0an3hzlgrnic7xnh3whj2ws2znw46hr")))) |
f6c5a898 | 1273 | (build-system julia-build-system) |
1274 | (inputs | |
1275 | `(("julia-benchmarktools" ,julia-benchmarktools))) | |
1276 | (propagated-inputs | |
1277 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
1278 | ("julia-richardson" ,julia-richardson) | |
1279 | ("julia-staticarrays" ,julia-staticarrays))) | |
1280 | (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl") | |
1281 | (synopsis "Estimates derivatives with finite differences") | |
1282 | (description "This package calculates approximate derivatives numerically | |
1283 | using finite difference.") | |
1284 | (license license:expat))) | |
1285 | ||
50f99cc5 | 1286 | (define-public julia-fixedpointnumbers |
1287 | (package | |
1288 | (name "julia-fixedpointnumbers") | |
1289 | (version "0.8.4") | |
1290 | (source | |
1291 | (origin | |
1292 | (method git-fetch) | |
1293 | (uri (git-reference | |
1294 | (url "https://github.com/JuliaMath/FixedPointNumbers.jl") | |
1295 | (commit (string-append "v" version)))) | |
1296 | (file-name (git-file-name name version)) | |
1297 | (sha256 | |
1298 | (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi")))) | |
1299 | (build-system julia-build-system) | |
1300 | (arguments | |
1301 | `(#:phases | |
1302 | (modify-phases %standard-phases | |
1303 | (add-after 'unpack 'disable-failing-test | |
1304 | (lambda* (#:key outputs #:allow-other-keys) | |
1305 | (substitute* "test/fixed.jl" | |
1306 | ;; A deprecation warning is not thrown | |
1307 | (("@test_logs.*:warn" all) (string-append "# " all))) | |
1308 | #t))))) | |
1309 | (propagated-inputs `(("julia-compat" ,julia-compat))) | |
1310 | (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl") | |
1311 | (synopsis "Fixed point types for Julia") | |
1312 | (description "@code{FixedPointNumbers.jl} implements fixed-point number | |
1313 | types for Julia. A fixed-point number represents a fractional, or | |
1314 | non-integral, number. In contrast with the more widely known floating-point | |
1315 | numbers, with fixed-point numbers the decimal point doesn't \"float\": | |
1316 | fixed-point numbers are effectively integers that are interpreted as being | |
1317 | scaled by a constant factor. Consequently, they have a fixed number of | |
1318 | digits (bits) after the decimal (radix) point.") | |
1319 | (license license:expat))) | |
d4987a50 | 1320 | |
9bb2e649 EF |
1321 | (define-public julia-formatting |
1322 | (package | |
1323 | (name "julia-formatting") | |
1324 | (version "0.4.2") | |
1325 | (source | |
1326 | (origin | |
1327 | (method git-fetch) | |
1328 | (uri (git-reference | |
1329 | (url "https://github.com/JuliaIO/Formatting.jl") | |
1330 | (commit (string-append "v" version)))) | |
1331 | (file-name (git-file-name name version)) | |
1332 | (sha256 | |
1333 | (base32 "0ma3q9my51rr38bb5712xkc4h3rq0wsfjb4ac6mdh9ywn8rqvrmh")))) | |
1334 | (build-system julia-build-system) | |
1335 | (home-page "https://github.com/JuliaIO/Formatting.jl") | |
1336 | (synopsis "Julia package to provide Python-like formatting support") | |
1337 | (description "This package offers Python-style general formatting and | |
1338 | c-style numerical formatting.") | |
1339 | (license license:expat))) | |
1340 | ||
57e034d5 | 1341 | (define-public julia-forwarddiff |
1342 | (package | |
1343 | (name "julia-forwarddiff") | |
3beb0b80 | 1344 | (version "0.10.18") |
57e034d5 | 1345 | (source |
1346 | (origin | |
1347 | (method git-fetch) | |
1348 | (uri (git-reference | |
1349 | (url "https://github.com/JuliaDiff/ForwardDiff.jl") | |
1350 | (commit (string-append "v" version)))) | |
1351 | (file-name (git-file-name name version)) | |
1352 | (sha256 | |
3beb0b80 | 1353 | (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs")))) |
57e034d5 | 1354 | (build-system julia-build-system) |
1355 | (inputs ;required for tests | |
1356 | `(("julia-calculus" ,julia-calculus) | |
1357 | ("julia-difftests" ,julia-difftests))) | |
1358 | (propagated-inputs | |
1359 | `(("julia-commonsubexpressions" ,julia-commonsubexpressions) | |
1360 | ("julia-diffresults" ,julia-diffresults) | |
1361 | ("julia-diffrules" ,julia-diffrules) | |
1362 | ("julia-nanmath" ,julia-nanmath) | |
1363 | ("julia-specialfunctions" ,julia-specialfunctions) | |
1364 | ("julia-staticarrays" ,julia-staticarrays))) | |
1365 | (home-page "https://github.com/JuliaDiff/ForwardDiff.jl") | |
1366 | (synopsis "Methods to take multidimensional derivatives") | |
1367 | (description "This package implements methods to take derivatives, | |
1368 | gradients, Jacobians, Hessians, and higher-order derivatives of native Julia | |
1369 | functions (or any callable object, really) using forward mode automatic | |
1370 | differentiation (AD).") | |
1371 | (license license:expat))) | |
cc7c1f90 | 1372 | |
f9f98a2f EF |
1373 | (define-public julia-functionwrappers |
1374 | (package | |
1375 | (name "julia-functionwrappers") | |
1376 | (version "1.1.2") | |
1377 | (source | |
1378 | (origin | |
1379 | (method git-fetch) | |
1380 | (uri (git-reference | |
1381 | (url "https://github.com/yuyichao/FunctionWrappers.jl") | |
1382 | (commit (string-append "v" version)))) | |
1383 | (file-name (git-file-name name version)) | |
1384 | (sha256 | |
1385 | (base32 "02jilpjr7px6138dx2w7ixricvfgsxqdk84d9dgviranibhnjcxa")))) | |
1386 | (build-system julia-build-system) | |
1387 | (arguments | |
1388 | `(#:phases | |
1389 | (modify-phases %standard-phases | |
1390 | (add-after 'unpack 'adjust-tests | |
1391 | (lambda _ | |
1392 | (substitute* "test/runtests.jl" | |
1393 | (("testset \\\"Abstract.*" all) | |
1394 | (string-append all "return\n")))))))) | |
1395 | (home-page "https://github.com/yuyichao/FunctionWrappers.jl") | |
1396 | (synopsis "Type stable and efficient wrapper of arbitrary functions") | |
1397 | (description "This package provides a type stable and efficient wrapper of | |
1398 | arbitrary functions.") | |
1399 | (license license:expat))) | |
1400 | ||
ced47448 EF |
1401 | (define-public julia-fuzzycompletions |
1402 | (package | |
1403 | (name "julia-fuzzycompletions") | |
1404 | (version "0.4.1") | |
1405 | (source | |
1406 | (origin | |
1407 | (method git-fetch) | |
1408 | (uri (git-reference | |
1409 | (url "https://github.com/JunoLab/FuzzyCompletions.jl") | |
1410 | (commit (string-append "v" version)))) | |
1411 | (file-name (git-file-name name version)) | |
1412 | (sha256 | |
1413 | (base32 "07sv88c472n6w4x7diy952igbcfm1s104ysnnvprld83312siw06")))) | |
1414 | (build-system julia-build-system) | |
1415 | (home-page "https://github.com/JunoLab/FuzzyCompletions.jl") | |
1416 | (synopsis "Fuzzy completion provider for Julia") | |
1417 | (description | |
1418 | "FuzzyCompletions provides fuzzy completions for a Julia runtime session.") | |
1419 | (license license:expat))) | |
1420 | ||
2ea20cde EF |
1421 | (define-public julia-genericlinearalgebra |
1422 | (package | |
1423 | (name "julia-genericlinearalgebra") | |
1424 | (version "0.2.5") | |
1425 | (source | |
1426 | (origin | |
1427 | (method git-fetch) | |
1428 | (uri (git-reference | |
1429 | (url "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl") | |
1430 | (commit (string-append "v" version)))) | |
1431 | (file-name (git-file-name name version)) | |
1432 | (sha256 | |
1433 | (base32 "0ndwypa397z3pwzdgc3s9plaqlqf63g3d4px5pvym5psgr6lnm3l")))) | |
1434 | (build-system julia-build-system) | |
1435 | (arguments | |
1436 | `(#:phases | |
1437 | (modify-phases %standard-phases | |
1438 | (add-after 'unpack 'adjust-test-suite | |
1439 | (lambda _ | |
1440 | (substitute* "test/runtests.jl" | |
1441 | ((".*lapack.*") ""))))))) | |
1442 | (native-inputs | |
1443 | `(("julia-quaternions" ,julia-quaternions))) | |
1444 | (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl") | |
1445 | (synopsis "Generic numerical linear algebra") | |
1446 | (description "The purpose of this package is partly to extend linear algebra | |
1447 | functionality in base to cover generic element types, e.g. @code{BigFloat} and | |
1448 | @code{Quaternion}, and partly to be a place to experiment with fast linear | |
1449 | algebra routines written in Julia (except for optimized BLAS).") | |
1450 | (license license:expat))) | |
1451 | ||
ba637c5c EF |
1452 | (define-public julia-genericschur |
1453 | (package | |
1454 | (name "julia-genericschur") | |
1455 | (version "0.5.0") | |
1456 | (source | |
1457 | (origin | |
1458 | (method git-fetch) | |
1459 | (uri (git-reference | |
1460 | (url "https://github.com/RalphAS/GenericSchur.jl") | |
1461 | (commit (string-append "v" version)))) | |
1462 | (file-name (git-file-name name version)) | |
1463 | (sha256 | |
1464 | (base32 "0kklc2niylvynhq0v49kdmy58m9jmr5jxjf287k1wr9r81fya3sz")))) | |
1465 | (build-system julia-build-system) | |
1466 | (arguments | |
1467 | `(#:phases | |
1468 | (modify-phases %standard-phases | |
1469 | (add-after 'unpack 'adjust-test-suite | |
1470 | (lambda _ | |
1471 | (substitute* "test/complex.jl" | |
1472 | ;; expected Array{Int32,1}, got a value of type Array{Int64,1} | |
1473 | (("A = _example") "#A = _example") | |
1474 | (("schurtest\\(A,20\\)") "")) | |
1475 | (substitute* "test/runtests.jl" | |
1476 | ;; Test errors relating to liblapack.so | |
1477 | ((".*complex\\.jl.*") "") | |
1478 | ((".*real\\.jl.*") "") | |
1479 | ;; GenericSVD is deprecated upstream | |
1480 | ((".*gordschur\\.jl.*") ""))))))) | |
1481 | (home-page "https://github.com/RalphAS/GenericSchur.jl") | |
1482 | (synopsis "Schur decomposition of matrices with generic element types") | |
1483 | (description "The Schur decomposition is the workhorse for eigensystem | |
1484 | analysis of dense matrices. The diagonal eigen-decomposition of normal | |
1485 | (especially Hermitian) matrices is an important special case, but for non-normal | |
1486 | matrices the Schur form is often more useful.") | |
1487 | (license license:expat))) | |
1488 | ||
2262f799 EF |
1489 | (define-public julia-graphics |
1490 | (package | |
1491 | (name "julia-graphics") | |
1492 | (version "1.1.0") | |
1493 | (source | |
1494 | (origin | |
1495 | (method git-fetch) | |
1496 | (uri (git-reference | |
1497 | (url "https://github.com/JuliaGraphics/Graphics.jl") | |
1498 | (commit (string-append "v" version)))) | |
1499 | (file-name (git-file-name name version)) | |
1500 | (sha256 | |
1501 | (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn")))) | |
1502 | (build-system julia-build-system) | |
1503 | (propagated-inputs | |
1504 | `(("julia-colors" ,julia-colors) | |
1505 | ("julia-nanmath" ,julia-nanmath))) | |
1506 | (home-page "https://github.com/JuliaGraphics/Graphics.jl") | |
1507 | (synopsis "Base graphics in Julia") | |
1508 | (description "@code{Graphics.jl} is an abstraction layer for graphical | |
1509 | operations in Julia.") | |
1510 | (license license:expat))) | |
1511 | ||
cc7c1f90 | 1512 | (define-public julia-gumbo |
1513 | (package | |
1514 | (name "julia-gumbo") | |
1515 | (version "0.8.0") | |
1516 | (source | |
1517 | (origin | |
1518 | (method git-fetch) | |
1519 | (uri (git-reference | |
1520 | (url "https://github.com/JuliaWeb/Gumbo.jl") | |
1521 | (commit (string-append "v" version)))) | |
1522 | (file-name (git-file-name name version)) | |
1523 | (sha256 | |
1524 | (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm")))) | |
1525 | (build-system julia-build-system) | |
1526 | (propagated-inputs | |
1527 | `(("julia-abstracttrees" ,julia-abstracttrees) | |
1528 | ("julia-gumbo-jll" ,julia-gumbo-jll))) | |
1529 | (home-page "https://github.com/JuliaWeb/Gumbo.jl") | |
1530 | (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML") | |
1531 | (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo | |
1532 | library for parsing HTML.") | |
1533 | (license license:expat))) | |
57e034d5 | 1534 | |
d4987a50 | 1535 | (define-public julia-http |
1536 | (package | |
1537 | (name "julia-http") | |
1538 | (version "0.9.2") | |
1539 | (source | |
1540 | (origin | |
1541 | (method git-fetch) | |
1542 | (uri (git-reference | |
1543 | (url "https://github.com/JuliaWeb/HTTP.jl") | |
1544 | (commit (string-append "v" version)))) | |
1545 | (file-name (git-file-name name version)) | |
1546 | (sha256 | |
1547 | (base32 "0ij0yci13c46p92m4zywvcs02nn8pm0abyfffiyhxvva6hq48lyl")))) | |
1548 | (build-system julia-build-system) | |
1549 | (arguments | |
1550 | `(#:phases | |
1551 | (modify-phases %standard-phases | |
1552 | (add-before 'install 'disable-network-tests | |
1553 | (lambda _ | |
1554 | (substitute* "test/runtests.jl" | |
1555 | (("\"async.jl") "# \"async.jl") | |
1556 | (("\"client.jl") "# \"client.jl")) | |
1557 | (substitute* "test/aws4.jl" | |
1558 | (("@testset.*HTTP.request with AWS authentication.*" all) | |
1559 | (string-append all "return\n"))) | |
1560 | (substitute* "test/insert_layers.jl" | |
1561 | (("@testset.*Inserted final layer runs handler.*" all) | |
1562 | (string-append all "return\n"))) | |
1563 | (substitute* "test/multipart.jl" | |
1564 | (("@testset \"Setting of Content-Type.*" all) | |
1565 | (string-append all "return\n")) | |
1566 | (("@testset \"Deprecation of .*" all) | |
1567 | (string-append all "return\n"))) | |
1568 | (substitute* "test/websockets.jl" | |
1569 | (("@testset.*External Host.*" all) | |
1570 | (string-append all "return\n"))) | |
1571 | (substitute* "test/messages.jl" | |
1572 | (("@testset.*Read methods.*" all) | |
1573 | (string-append all "return\n")) | |
1574 | (("@testset.*Body - .*" all) | |
1575 | (string-append all "return\n")) | |
1576 | (("@testset.*Write to file.*" all) | |
1577 | (string-append all "return\n"))) | |
1578 | #t))))) | |
1579 | (propagated-inputs | |
1580 | `(("julia-inifile" ,julia-inifile) | |
1581 | ("julia-mbedtls" ,julia-mbedtls) | |
1582 | ("julia-uris" ,julia-uris))) | |
1583 | ;; required for tests | |
1584 | (inputs | |
1585 | `(("julia-json" ,julia-json) | |
1586 | ("julia-bufferedstreams" ,julia-bufferedstreams))) | |
1587 | (home-page "https://juliaweb.github.io/HTTP.jl/") | |
1588 | (synopsis "HTTP support for Julia") | |
1589 | (description "@code{HTTP.jl} is a Julia library for HTTP Messages, | |
1590 | implementing both a client and a server.") | |
1591 | (license license:expat))) | |
673bd9a7 | 1592 | |
7cb023cc EF |
1593 | (define-public julia-identityranges |
1594 | (package | |
1595 | (name "julia-identityranges") | |
1596 | (version "0.3.1") | |
1597 | (source | |
1598 | (origin | |
1599 | (method git-fetch) | |
1600 | (uri (git-reference | |
1601 | (url "https://github.com/JuliaArrays/IdentityRanges.jl") | |
1602 | (commit (string-append "v" version)))) | |
1603 | (file-name (git-file-name name version)) | |
1604 | (sha256 | |
1605 | (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml")))) | |
1606 | (build-system julia-build-system) | |
1607 | (propagated-inputs | |
1608 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
1609 | (home-page "https://github.com/JuliaArrays/IdentityRanges.jl") | |
1610 | (synopsis "Ranges that preserve indices of views") | |
1611 | (description "@code{IdentityRanges} are Julia-language a helper type for | |
1612 | creating \"views\" of arrays. They are a custom type of AbstractUnitRange that | |
1613 | makes it easy to preserve the indices of array views. The key property of an | |
1614 | @code{IdentityRange r} is that @code{r[i] == i} (hence the name of the | |
1615 | type/package), and that they support arbitrary start/stop indices (i.e., not | |
1616 | just starting at 1).") | |
1617 | (license license:expat))) | |
1618 | ||
673bd9a7 EF |
1619 | (define-public julia-ifelse |
1620 | (package | |
1621 | (name "julia-ifelse") | |
1622 | (version "0.1.0") | |
1623 | (source | |
1624 | (origin | |
1625 | (method git-fetch) | |
1626 | (uri (git-reference | |
1627 | (url "https://github.com/sciml/ifelse.jl") | |
1628 | (commit (string-append "v" version)))) | |
1629 | (file-name (git-file-name name version)) | |
1630 | (sha256 | |
1631 | (base32 "1wrw842r8708fryf2ihp9mkmdrg27saa9nix2c31vs995k2fgr9w")))) | |
1632 | (build-system julia-build-system) | |
1633 | (home-page "https://github.com/sciml/ifelse.jl") | |
1634 | (synopsis "Function form of the if-else conditional statement") | |
1635 | (description "This package provides a convenient function form of the | |
1636 | conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.") | |
1637 | (license license:expat))) | |
50f99cc5 | 1638 | |
57860112 EF |
1639 | (define-public julia-imageaxes |
1640 | (package | |
1641 | (name "julia-imageaxes") | |
1642 | (version "0.6.9") | |
1643 | (source | |
1644 | (origin | |
1645 | (method git-fetch) | |
1646 | (uri (git-reference | |
1647 | (url "https://github.com/JuliaImages/ImageAxes.jl") | |
1648 | (commit (string-append "v" version)))) | |
1649 | (file-name (git-file-name name version)) | |
1650 | (sha256 | |
1651 | (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd")))) | |
1652 | (build-system julia-build-system) | |
1653 | (propagated-inputs | |
1654 | `(("julia-axisarrays" ,julia-axisarrays) | |
1655 | ("julia-imagecore" ,julia-imagecore) | |
1656 | ("julia-reexport" ,julia-reexport) | |
1657 | ("julia-simpletraits" ,julia-simpletraits))) | |
1658 | (native-inputs | |
1659 | `(("julia-unitful" ,julia-unitful))) | |
1660 | (home-page "https://github.com/JuliaImages/ImageAxes.jl") | |
1661 | (synopsis "Julia package for giving \"meaning\" to the axes of an image") | |
1662 | (description "This small package supports the representation of images as | |
1663 | @code{AxisArrays} to endow the axes with \"meaning,\" and makes programming with | |
1664 | such arrays easy via traits.") | |
1665 | (license license:expat))) | |
1666 | ||
e43c498b EF |
1667 | (define-public julia-imagebase |
1668 | (package | |
1669 | (name "julia-imagebase") | |
1670 | (version "0.1.1") | |
1671 | (source | |
1672 | (origin | |
1673 | (method git-fetch) | |
1674 | (uri (git-reference | |
1675 | (url "https://github.com/JuliaImages/ImageBase.jl") | |
1676 | (commit (string-append "v" version)))) | |
1677 | (file-name (git-file-name name version)) | |
1678 | (sha256 | |
1679 | (base32 "1n63f2zs6ail9pcl7rzgv3l0z8v1idjsaza3zgvgy7iacxsdpcj2")))) | |
1680 | (build-system julia-build-system) | |
1681 | (arguments | |
1682 | `(#:tests? #f)) ; Cycle with ImageMagick.jl. | |
1683 | (propagated-inputs | |
1684 | `(("julia-imagecore" ,julia-imagecore) | |
1685 | ("julia-reexport" ,julia-reexport))) | |
1686 | ;(native-inputs | |
1687 | ; `(("julia-imagemagick" ,julia-imagemagick) | |
1688 | ; ("julia-offsetarrays" ,julia-offsetarrays) | |
1689 | ; ("julia-testimages" ,julia-testimages))) | |
1690 | (home-page "https://github.com/JuliaImages/ImageBase.jl") | |
1691 | (synopsis "Wrapper package around ImageCore") | |
1692 | (description "This is a twin package to @code{ImageCore} with functions that | |
1693 | are used among many of the packages in JuliaImages. The main purpose of this | |
1694 | package is to reduce unnecessary compilation overhead from external | |
1695 | dependencies.") | |
1696 | (license license:expat))) | |
1697 | ||
87f27b0f EF |
1698 | (define-public julia-imagecore |
1699 | (package | |
1700 | (name "julia-imagecore") | |
1701 | (version "0.9.0") | |
1702 | (source | |
1703 | (origin | |
1704 | (method git-fetch) | |
1705 | (uri (git-reference | |
1706 | (url "https://github.com/JuliaImages/ImageCore.jl") | |
1707 | (commit (string-append "v" version)))) | |
1708 | (file-name (git-file-name name version)) | |
1709 | (sha256 | |
1710 | (base32 "0d844lrilw7zjpax8zr5272a9s292wg4qk53mvm0n88yai598zd6")))) | |
1711 | (build-system julia-build-system) | |
1712 | (arguments | |
1713 | `(#:tests? #f)) ; Cycle with ImageMagick.jl. | |
1714 | (propagated-inputs | |
1715 | `(("julia-abstractffts" ,julia-abstractffts) | |
1716 | ("julia-colors" ,julia-colors) | |
1717 | ("julia-colorvectorspace" ,julia-colorvectorspace) | |
1718 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
1719 | ("julia-graphics" ,julia-graphics) | |
1720 | ("julia-mappedarrays" ,julia-mappedarrays) | |
1721 | ("julia-mosaicviews" ,julia-mosaicviews) | |
1722 | ("julia-offsetarrays" ,julia-offsetarrays) | |
1723 | ("julia-paddedviews" ,julia-paddedviews) | |
1724 | ("julia-reexport" ,julia-reexport))) | |
1725 | ;(native-inputs | |
1726 | ; `(("julia-aqua" ,julia-aqua) | |
1727 | ; ("julia-colorvectorspace" ,julia-colorvectorspace) | |
1728 | ; ("julia-documenter" ,julia-documenter) | |
1729 | ; ("julia-fftw" ,julia-fftw) | |
1730 | ; ("julia-imageinterminal" ,julia-imageinterminal) | |
1731 | ; ("julia-imagemagick" ,julia-imagemagick) | |
1732 | ; ("julia-referencetests" ,julia-referencetests) | |
1733 | ; ("julia-statistics" ,julia-statistics))) | |
1734 | (home-page "https://github.com/JuliaImages/ImageCore.jl") | |
1735 | (synopsis "Julia types for representing images") | |
1736 | (description "@code{ImageCore} is the lowest-level component of the system | |
1737 | of packages designed to support image processing and computer vision.") | |
1738 | (license license:expat))) | |
1739 | ||
6669b005 EF |
1740 | (define-public julia-imageinterminal |
1741 | (package | |
1742 | (name "julia-imageinterminal") | |
1743 | (version "0.4.6") | |
1744 | (source | |
1745 | (origin | |
1746 | (method git-fetch) | |
1747 | (uri (git-reference | |
1748 | (url "https://github.com/JuliaImages/ImageInTerminal.jl") | |
1749 | (commit (string-append "v" version)))) | |
1750 | (file-name (git-file-name name version)) | |
1751 | (sha256 | |
1752 | (base32 "1mqbv27qmnsr6wqvklzb4gawi7hp4wnaspszhaxny1m53q6wbifl")))) | |
1753 | (build-system julia-build-system) | |
1754 | (arguments | |
1755 | `(#:tests? #f)) ; Cycle with ReferenceTests.jl. | |
1756 | (propagated-inputs | |
1757 | `(("julia-crayons" ,julia-crayons) | |
1758 | ("julia-imagecore" ,julia-imagecore) | |
1759 | ("julia-imagetransformations" ,julia-imagetransformations))) | |
1760 | ;(native-inputs | |
1761 | ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations) | |
1762 | ; ("julia-imagemagick" ,julia-imagemagick) | |
1763 | ; ("julia-offsetarrays" ,julia-offsetarrays) | |
1764 | ; ("julia-referencetests" ,julia-referencetests) | |
1765 | ; ("julia-rotations" ,julia-rotations) | |
1766 | ; ("julia-sparsearrays" ,julia-sparsearrays) | |
1767 | ; ("julia-testimages" ,julia-testimages))) | |
1768 | (home-page "https://github.com/JuliaImages/ImageInTerminal.jl") | |
1769 | (synopsis "Julia package for displaying images in the terminal") | |
1770 | (description "@code{ImageInTerminal.jl} is a drop-in package that once | |
1771 | imported changes a how a single @code{Colorant} and whole @code{Colorant} arrays | |
1772 | (i.e. Images) are displayed in the interactive REPL. The displayed images will | |
1773 | be downscaled to fit into the size of your active terminal session.") | |
1774 | (license license:expat))) | |
1775 | ||
0ffa2521 EF |
1776 | (define-public julia-imagemagick |
1777 | (package | |
1778 | (name "julia-imagemagick") | |
1779 | (version "1.2.1") | |
1780 | (source | |
1781 | (origin | |
1782 | (method git-fetch) | |
1783 | (uri (git-reference | |
1784 | (url "https://github.com/JuliaIO/ImageMagick.jl") | |
1785 | (commit (string-append "v" version)))) | |
1786 | (file-name (git-file-name name version)) | |
1787 | (sha256 | |
1788 | (base32 "05vzv4jsj3l9pv6yrix28hlw7wnag0mqdfjwv8shn4x71hcfxl1p")))) | |
1789 | (build-system julia-build-system) | |
1790 | (arguments | |
1791 | `(#:phases | |
1792 | (modify-phases %standard-phases | |
1793 | (add-after 'unpack 'skip-failing-test | |
1794 | (lambda _ | |
1795 | ;; These tests try to download from the imagemagick.org | |
1796 | (substitute* "test/runtests.jl" | |
1797 | ((".*readremote\\.jl.*") "")) | |
1798 | ;; Tests with the color gray are hard. | |
1799 | (substitute* "test/constructed_images.jl" | |
1800 | (("test (b == aa)" _ test) (string-append "test_nowarn " test)) | |
1801 | (("test (B == map)" _ test) (string-append "test_nowarn " test))) | |
1802 | #t))))) | |
1803 | (propagated-inputs | |
1804 | `(("julia-fileio" ,julia-fileio) | |
1805 | ("julia-imagecore" ,julia-imagecore) | |
1806 | ("julia-imagemagick-jll" ,julia-imagemagick-jll))) | |
1807 | (native-inputs | |
1808 | `(("julia-colors" ,julia-colors) | |
1809 | ("julia-colorvectorspace" ,julia-colorvectorspace) | |
1810 | ("julia-imagemetadata" ,julia-imagemetadata) | |
1811 | ("julia-imageshow" ,julia-imageshow) | |
1812 | ("julia-imagetransformations" ,julia-imagetransformations) | |
1813 | ("julia-indirectarrays" ,julia-indirectarrays) | |
1814 | ("julia-offsetarrays" ,julia-offsetarrays) | |
1815 | ("julia-zipfile" ,julia-zipfile))) | |
1816 | (home-page "https://github.com/JuliaIO/ImageMagick.jl") | |
1817 | (synopsis "Thin wrapper for ImageMagick") | |
1818 | (description "This package provides a wrapper around ImageMagick version 6. | |
1819 | It was split off from @code{Images.jl} to make image I/O more modular.") | |
1820 | (license license:expat))) | |
1821 | ||
6eb1b1d8 EF |
1822 | (define-public julia-imagemetadata |
1823 | (package | |
1824 | (name "julia-imagemetadata") | |
1825 | (version "0.9.6") | |
1826 | (source | |
1827 | (origin | |
1828 | (method git-fetch) | |
1829 | (uri (git-reference | |
1830 | (url "https://github.com/JuliaImages/ImageMetadata.jl") | |
1831 | (commit (string-append "v" version)))) | |
1832 | (file-name (git-file-name name version)) | |
1833 | (sha256 | |
1834 | (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1")))) | |
1835 | (build-system julia-build-system) | |
1836 | (propagated-inputs | |
1837 | `(("julia-axisarrays" ,julia-axisarrays) | |
1838 | ("julia-imageaxes" ,julia-imageaxes) | |
1839 | ("julia-imagecore" ,julia-imagecore) | |
1840 | ("julia-indirectarrays" ,julia-indirectarrays))) | |
1841 | (native-inputs | |
1842 | `(("julia-offsetarrays" ,julia-offsetarrays) | |
1843 | ("julia-simpletraits" ,julia-simpletraits) | |
1844 | ("julia-unitful" ,julia-unitful))) | |
1845 | (home-page "https://github.com/JuliaImages/ImageMetadata.jl") | |
1846 | (synopsis "Julia package for images having metadata") | |
1847 | (description "@code{ImageMetadata} is a simple package providing utilities | |
1848 | for working with images that have metadata attached. For example, you might | |
1849 | want to associate an image with the date on which the picture was taken, or an | |
1850 | MRI scan with patient data, or an astronomical image with sky coordinates and | |
1851 | information about the detector used to acquire the image.") | |
1852 | (license license:expat))) | |
1853 | ||
f5de098c EF |
1854 | (define-public julia-imageshow |
1855 | (package | |
1856 | (name "julia-imageshow") | |
1857 | (version "0.3.2") | |
1858 | (source | |
1859 | (origin | |
1860 | (method git-fetch) | |
1861 | (uri (git-reference | |
1862 | (url "https://github.com/JuliaImages/ImageShow.jl") | |
1863 | (commit (string-append "v" version)))) | |
1864 | (file-name (git-file-name name version)) | |
1865 | (sha256 | |
1866 | (base32 "00wq3ab8y6nyhxwc5lpz9dnslsmcr1vg3cjdkh7wb7k6a8bw98mh")))) | |
1867 | (build-system julia-build-system) | |
1868 | (arguments | |
1869 | `(#:tests? #f)) ; cycle with ImageMagick.jl. | |
1870 | (propagated-inputs | |
1871 | `(("julia-fileio" ,julia-fileio) | |
1872 | ("julia-imagebase" ,julia-imagebase) | |
1873 | ("julia-imagecore" ,julia-imagecore) | |
1874 | ("julia-offsetarrays" ,julia-offsetarrays) | |
1875 | ("julia-stackviews" ,julia-stackviews))) | |
1876 | ;(native-inputs | |
1877 | ; `(("julia-imagedistances" ,julia-imagedistances) | |
1878 | ; ("julia-imagemagick" ,julia-imagemagick) | |
1879 | ; ("julia-suppressor" ,julia-suppressor) | |
1880 | ; ("julia-testimages" ,julia-testimages))) | |
1881 | (home-page "https://github.com/JuliaImages/ImageShow.jl") | |
1882 | (synopsis | |
1883 | "Inline graphical display of images in Julia graphical environments") | |
1884 | (description "This package implements image @code{show} methods suitable | |
1885 | for graphical platforms such as IJulia. It is intended to provide convenient | |
1886 | inline presentation of greyscale or color images.") | |
1887 | (license license:expat))) | |
1888 | ||
f4e3a504 EF |
1889 | (define-public julia-imagetransformations |
1890 | (package | |
1891 | (name "julia-imagetransformations") | |
1892 | (version "0.8.12") | |
1893 | (source | |
1894 | (origin | |
1895 | (method git-fetch) | |
1896 | (uri (git-reference | |
1897 | (url "https://github.com/JuliaImages/ImageTransformations.jl") | |
1898 | (commit (string-append "v" version)))) | |
1899 | (file-name (git-file-name name version)) | |
1900 | (sha256 | |
1901 | (base32 "0i8gw68hljshsy9wdl5mrpbb31irhmayqyglsxi7jwm88iy9pxhm")))) | |
1902 | (build-system julia-build-system) | |
1903 | (arguments | |
1904 | `(#:tests? #f)) ; Cycle with ImageMagick.jl. | |
1905 | (propagated-inputs | |
1906 | `(("julia-axisalgorithms" ,julia-axisalgorithms) | |
1907 | ("julia-colorvectorspace" ,julia-colorvectorspace) | |
1908 | ("julia-coordinatetransformations" ,julia-coordinatetransformations) | |
1909 | ("julia-identityranges" ,julia-identityranges) | |
1910 | ("julia-imagecore" ,julia-imagecore) | |
1911 | ("julia-interpolations" ,julia-interpolations) | |
1912 | ("julia-offsetarrays" ,julia-offsetarrays) | |
1913 | ("julia-rotations" ,julia-rotations) | |
1914 | ("julia-staticarrays" ,julia-staticarrays))) | |
1915 | ;(native-inputs | |
1916 | ; `(("julia-imagemagick" ,julia-imagemagick) | |
1917 | ; ("julia-referencetests" ,julia-referencetests) | |
1918 | ; ("julia-testimages" ,julia-testimages))) | |
1919 | (home-page "https://github.com/JuliaImages/ImageTransformations.jl") | |
1920 | (synopsis "Geometric transformations on images for Julia") | |
1921 | (description "This package provides support for image resizing, image | |
1922 | rotation, and other spatial transformations of arrays.") | |
1923 | (license license:expat))) | |
1924 | ||
d54d21d0 EF |
1925 | (define-public julia-indexing |
1926 | (package | |
1927 | (name "julia-indexing") | |
1928 | (version "1.1.1") | |
1929 | (source | |
1930 | (origin | |
1931 | (method git-fetch) | |
1932 | (uri (git-reference | |
1933 | (url "https://github.com/andyferris/Indexing.jl") | |
1934 | (commit (string-append "v" version)))) | |
1935 | (file-name (git-file-name name version)) | |
1936 | (sha256 | |
1937 | (base32 "1s7bz5aaj9sx753pcaixq83jgbk33adxgybpinjgzb9lzdv1ddgx")))) | |
1938 | (build-system julia-build-system) | |
1939 | (home-page "https://github.com/andyferris/Indexing.jl") | |
1940 | (synopsis "Generalized indexing for Julia") | |
1941 | (description "This package defines functions for getting multiple indices | |
1942 | out of dictionaries, tuples, etc, extending this ability beyond | |
1943 | @code{AbstractArray}.") | |
1944 | (license license:expat))) | |
1945 | ||
4541cda7 EF |
1946 | (define-public julia-indirectarrays |
1947 | (package | |
1948 | (name "julia-indirectarrays") | |
1949 | (version "0.5.1") | |
1950 | (source | |
1951 | (origin | |
1952 | (method git-fetch) | |
1953 | (uri (git-reference | |
1954 | (url "https://github.com/JuliaArrays/IndirectArrays.jl") | |
1955 | (commit (string-append "v" version)))) | |
1956 | (file-name (git-file-name name version)) | |
1957 | (sha256 | |
1958 | (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s")))) | |
1959 | (build-system julia-build-system) | |
1960 | (native-inputs | |
1961 | `(("julia-colors" ,julia-colors) | |
1962 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
1963 | ("julia-mappedarrays" ,julia-mappedarrays))) | |
1964 | (home-page "https://github.com/JuliaArrays/IndirectArrays.jl") | |
1965 | (synopsis "Julia implementation of indexed arrays") | |
1966 | (description "An @code{IndirectArray} is one that encodes data using a | |
1967 | combination of an @code{index} and a @code{value} table. Each element is | |
1968 | assigned its own index, which is used to retrieve the value from the | |
1969 | @code{value} table. Among other uses, @code{IndirectArrays} can represent | |
1970 | indexed images, sometimes called \"colormap images\" or \"paletted images.\"") | |
1971 | (license license:expat))) | |
1972 | ||
fc781578 | 1973 | (define-public julia-inifile |
1974 | (package | |
1975 | (name "julia-inifile") | |
1976 | (version "0.5.0") | |
1977 | (source | |
1978 | (origin | |
1979 | (method git-fetch) | |
1980 | (uri (git-reference | |
1981 | (url "https://github.com/JuliaIO/IniFile.jl") | |
1982 | (commit "8ba59958495fa276d6489d2c3903e765d75e0bc0"))) | |
1983 | (file-name (git-file-name name version)) | |
1984 | (sha256 | |
1985 | (base32 "11h6f99jpbg729lplw841m68jprka7q3n8yw390bndlmcdsjabpd")))) | |
1986 | (build-system julia-build-system) | |
1987 | (home-page "https://github.com/JuliaIO/IniFile.jl") | |
1988 | (synopsis "Reading Windows-style INI files") | |
1989 | (description "This is a Julia package that defines an IniFile type that | |
969b80ef | 1990 | interfaces with @file{.ini} files.") |
fc781578 | 1991 | (license license:expat))) |
1992 | ||
fcc15a4a EF |
1993 | (define-public julia-interpolations |
1994 | (package | |
1995 | (name "julia-interpolations") | |
1996 | (version "0.13.2") | |
1997 | (source | |
1998 | (origin | |
1999 | (method git-fetch) | |
2000 | (uri (git-reference | |
2001 | (url "https://github.com/JuliaMath/Interpolations.jl") | |
2002 | (commit (string-append "v" version)))) | |
2003 | (file-name (git-file-name name version)) | |
2004 | (sha256 | |
2005 | (base32 "06wh4fc7hy20kq9iipk3w8v50vd09k7vkii43k8z1vw036f6l7x3")))) | |
2006 | (build-system julia-build-system) | |
2007 | (propagated-inputs | |
2008 | `(("julia-axisalgorithms" ,julia-axisalgorithms) | |
2009 | ("julia-offsetarrays" ,julia-offsetarrays) | |
2010 | ("julia-ratios" ,julia-ratios) | |
2011 | ("julia-staticarrays" ,julia-staticarrays) | |
2012 | ("julia-woodburymatrices" ,julia-woodburymatrices))) | |
2013 | (native-inputs | |
2014 | `(("julia-dualnumbers" ,julia-dualnumbers) | |
2015 | ("julia-forwarddiff" ,julia-forwarddiff) | |
2016 | ("julia-offsetarrays" ,julia-offsetarrays) | |
2017 | ("julia-unitful" ,julia-unitful))) | |
2018 | (home-page "https://github.com/JuliaMath/Interpolations.jl") | |
2019 | (synopsis "Continuous interpolation of discrete datasets") | |
2020 | (description "This package implements a variety of interpolation schemes for | |
2021 | the Julia language. It has the goals of ease-of-use, broad algorithmic support, | |
2022 | and exceptional performance.") | |
2023 | (license license:expat))) | |
2024 | ||
736eecd5 EF |
2025 | (define-public julia-intervalsets |
2026 | (package | |
2027 | (name "julia-intervalsets") | |
2028 | (version "0.5.3") | |
2029 | (source | |
2030 | (origin | |
2031 | (method git-fetch) | |
2032 | (uri (git-reference | |
2033 | (url "https://github.com/JuliaMath/IntervalSets.jl") | |
2034 | (commit (string-append "v" version)))) | |
2035 | (file-name (git-file-name name version)) | |
2036 | (sha256 | |
2037 | (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag")))) | |
2038 | (build-system julia-build-system) | |
2039 | (propagated-inputs | |
2040 | `(("julia-ellipsisnotation" ,julia-ellipsisnotation))) | |
2041 | (native-inputs | |
2042 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2043 | (home-page "https://github.com/JuliaMath/IntervalSets.jl") | |
2044 | (synopsis "Interval Sets for Julia") | |
2045 | (description "This package is intended to implement a \"minimal\" foundation | |
2046 | for intervals upon which other packages might build. In particular, we | |
2047 | encourage type-piracy for the reason that only one interval package can | |
2048 | unambiguously define the @code{..} and @code{±} operators.") | |
2049 | (license license:expat))) | |
2050 | ||
114db2b9 EF |
2051 | (define-public julia-invertedindices |
2052 | (package | |
2053 | (name "julia-invertedindices") | |
2054 | (version "1.0.0") | |
2055 | (source | |
2056 | (origin | |
2057 | (method git-fetch) | |
2058 | (uri (git-reference | |
2059 | (url "https://github.com/mbauman/InvertedIndices.jl") | |
2060 | (commit (string-append "v" version)))) | |
2061 | (file-name (git-file-name name version)) | |
2062 | (sha256 | |
2063 | (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46")))) | |
2064 | (build-system julia-build-system) | |
2065 | (native-inputs | |
2066 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2067 | (home-page "https://github.com/mbauman/InvertedIndices.jl") | |
2068 | (synopsis "Index type that allows for inverted selections") | |
2069 | (description "This package just exports one type: the @code{InvertedIndex}, | |
2070 | or @code{Not} for short. It can wrap any supported index type and may be used | |
2071 | as an index into any @code{AbstractArray} subtype, including OffsetArrays.") | |
2072 | (license license:expat))) | |
2073 | ||
fcc93efc EF |
2074 | (define-public julia-iocapture |
2075 | (package | |
2076 | (name "julia-iocapture") | |
3e6ee9ee | 2077 | (version "0.2.2") |
fcc93efc EF |
2078 | (source |
2079 | (origin | |
2080 | (method git-fetch) | |
2081 | (uri (git-reference | |
2082 | (url "https://github.com/JuliaDocs/IOCapture.jl") | |
2083 | (commit (string-append "v" version)))) | |
2084 | (file-name (git-file-name name version)) | |
2085 | (sha256 | |
3e6ee9ee | 2086 | (base32 "0v76wbvg80g9nx0rjbcna82zk61krly1y9yhyfrjv2pf7mcr4idb")))) |
fcc93efc EF |
2087 | (build-system julia-build-system) |
2088 | (home-page "https://github.com/JuliaDocs/IOCapture.jl") | |
2089 | (synopsis "Capture standard output and error streams") | |
2090 | (description "This package provides the @code{IOCapture.capture(f)} | |
2091 | function, which captures the standard output and standard error, and returns it | |
2092 | as a string together with the return value.") | |
2093 | (license license:expat))) | |
2094 | ||
57653707 | 2095 | (define-public julia-irtools |
2096 | (package | |
2097 | (name "julia-irtools") | |
2098 | (version "0.4.2") | |
2099 | (source | |
2100 | (origin | |
2101 | (method git-fetch) | |
2102 | (uri (git-reference | |
2103 | (url "https://github.com/FluxML/IRTools.jl") | |
2104 | (commit (string-append "v" version)))) | |
2105 | (file-name (git-file-name name version)) | |
2106 | (sha256 | |
2107 | (base32 "0wwzy77jcdnffnd5fr6xan7162g4wydz67igrq82wflwnrhlcx5y")))) | |
2108 | (arguments | |
2109 | '(#:tests? #f)) ;require Documenter, not packaged yet | |
2110 | (build-system julia-build-system) | |
2111 | (propagated-inputs | |
2112 | `(("julia-macrotools" ,julia-macrotools))) | |
2113 | (home-page "https://github.com/FluxML/IRTools.jl") | |
2114 | (synopsis "Simple and flexible IR format") | |
2115 | (description "This package provides a simple and flexible IR format, | |
2116 | expressive enough to work with both lowered and typed Julia code, as well as | |
2117 | external IRs. It can be used with Julia metaprogramming tools such as | |
2118 | Cassette.") | |
2119 | (license license:expat))) | |
2120 | ||
43f26eae EF |
2121 | (define-public julia-iteratorinterfaceextensions |
2122 | (package | |
2123 | (name "julia-iteratorinterfaceextensions") | |
2124 | (version "1.0.0") | |
2125 | (source | |
2126 | (origin | |
2127 | (method git-fetch) | |
2128 | (uri (git-reference | |
2129 | (url "https://github.com/queryverse/IteratorInterfaceExtensions.jl") | |
2130 | (commit (string-append "v" version)))) | |
2131 | (file-name (git-file-name name version)) | |
2132 | (sha256 | |
2133 | (base32 "1slpay1dhja8f9gy6z7b3psgvgcknn963dvfqqakvg1grk9ppa09")))) | |
2134 | (build-system julia-build-system) | |
2135 | (home-page "https://github.com/queryverse/IteratorInterfaceExtensions.jl") | |
2136 | (synopsis "Traits for Julia iterators") | |
2137 | (description "IteratorInterfaceExtensions defines a small number of | |
2138 | extensions to the iterator interface.") | |
2139 | (license license:expat))) | |
2140 | ||
503c2039 EF |
2141 | (define-public julia-itertools |
2142 | (package | |
2143 | (name "julia-itertools") | |
2144 | (version "1.3.0") | |
2145 | (source | |
2146 | (origin | |
2147 | (method git-fetch) | |
2148 | (uri (git-reference | |
2149 | (url "https://github.com/JuliaCollections/IterTools.jl") | |
2150 | (commit (string-append "v" version)))) | |
2151 | (file-name (git-file-name name version)) | |
2152 | (sha256 | |
2153 | (base32 "0haf974kcqj6arv4if97ahs4w3dmvslh6ab3hl57r9s41ic36xdq")))) | |
2154 | (build-system julia-build-system) | |
2155 | (home-page "https://github.com/JuliaCollections/IterTools.jl") | |
2156 | (synopsis "Common functional iterator patterns") | |
2157 | (description | |
2158 | "Common functional iterator patterns (formerly @code{Iterators.jl}).") | |
2159 | (license license:expat))) | |
2160 | ||
dae521a0 | 2161 | (define-public julia-json |
2162 | (package | |
2163 | (name "julia-json") | |
2164 | (version "0.21.1") | |
2165 | (source | |
2166 | (origin | |
2167 | (method git-fetch) | |
2168 | (uri (git-reference | |
2169 | (url "https://github.com/JuliaIO/JSON.jl") | |
2170 | (commit (string-append "v" version)))) | |
2171 | (file-name (git-file-name name version)) | |
2172 | (sha256 | |
2173 | (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m")))) | |
2174 | (build-system julia-build-system) | |
2175 | (propagated-inputs | |
2176 | `(("julia-datastructures" ,julia-datastructures) | |
2177 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
2178 | ("julia-parsers" ,julia-parsers) | |
2179 | ("julia-offsetarrays" ,julia-offsetarrays))) | |
2180 | (home-page "https://github.com/JuliaIO/JSON.jl") | |
2181 | (synopsis "JSON parsing and printing library for Julia") | |
2182 | (description "@code{JSON.jl} is a pure Julia module which supports parsing | |
2183 | and printing JSON documents.") | |
2184 | (license license:expat))) | |
2185 | ||
a5daa8c0 EF |
2186 | (define-public julia-json3 |
2187 | (package | |
2188 | (name "julia-json3") | |
2189 | (version "1.8.2") | |
2190 | (source | |
2191 | (origin | |
2192 | (method git-fetch) | |
2193 | (uri (git-reference | |
2194 | (url "https://github.com/quinnj/JSON3.jl") | |
2195 | (commit (string-append "v" version)))) | |
2196 | (file-name (git-file-name name version)) | |
2197 | (sha256 | |
2198 | (base32 "1mc3byqm6ygg4mjpdrx6grkr4gn06p25nr7050jgq1k2cf06iqba")))) | |
2199 | (build-system julia-build-system) | |
2200 | (propagated-inputs | |
2201 | `(("julia-parsers" ,julia-parsers) | |
2202 | ("julia-structtypes" ,julia-structtypes))) | |
2203 | (home-page "https://github.com/quinnj/JSON3.jl") | |
2204 | (synopsis "JSON package for Julia") | |
2205 | (description "This package provides another JSON package for Julia, with a | |
2206 | focus on speed and slick struct mapping.") | |
2207 | (license license:expat))) | |
2208 | ||
2cd0dcf3 EF |
2209 | (define-public julia-lazyarrays |
2210 | (package | |
2211 | (name "julia-lazyarrays") | |
2212 | (version "0.21.6") | |
2213 | (source | |
2214 | (origin | |
2215 | (method git-fetch) | |
2216 | (uri (git-reference | |
2217 | (url "https://github.com/JuliaArrays/LazyArrays.jl") | |
2218 | (commit (string-append "v" version)))) | |
2219 | (file-name (git-file-name name version)) | |
2220 | (sha256 | |
2221 | (base32 "0zm1ihvi8v2823ap59ajqcs46s5z0nai8l70n51f6j9dzp8lc3cy")))) | |
2222 | (build-system julia-build-system) | |
2223 | (propagated-inputs | |
2224 | `(("julia-arraylayouts" ,julia-arraylayouts) | |
2225 | ("julia-fillarrays" ,julia-fillarrays) | |
2226 | ("julia-macrotools" ,julia-macrotools) | |
2227 | ("julia-matrixfactorizations" ,julia-matrixfactorizations) | |
2228 | ("julia-staticarrays" ,julia-staticarrays))) | |
2229 | (native-inputs | |
2230 | `(("julia-tracker" ,julia-tracker))) | |
2231 | (home-page "https://github.com/JuliaArrays/LazyArrays.jl") | |
2232 | (synopsis "Lazy arrays and linear algebra") | |
2233 | (description "This package supports lazy analogues of array operations like | |
2234 | @code{vcat}, @code{hcat}, and multiplication. This helps with the | |
2235 | implementation of matrix-free methods for iterative solvers.") | |
2236 | (license license:expat))) | |
2237 | ||
8735dc17 EF |
2238 | (define-public julia-logexpfunctions |
2239 | (package | |
2240 | (name "julia-logexpfunctions") | |
2241 | (version "0.2.4") | |
2242 | (source | |
2243 | (origin | |
2244 | (method git-fetch) | |
2245 | (uri (git-reference | |
2246 | (url "https://github.com/JuliaStats/LogExpFunctions.jl") | |
2247 | (commit (string-append "v" version)))) | |
2248 | (file-name (git-file-name name version)) | |
2249 | (sha256 | |
2250 | (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n")))) | |
2251 | (build-system julia-build-system) | |
2252 | (propagated-inputs | |
2253 | `(("julia-docstringextensions" ,julia-docstringextensions))) | |
2254 | (native-inputs | |
2255 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2256 | (home-page "https://github.com/JuliaStats/LogExpFunctions.jl") | |
2257 | (synopsis "Special functions based on @code{log} and @code{exp}") | |
2258 | (description "Various special functions based on log and exp moved from | |
2259 | @code{StatsFuns.jl} into a separate package, to minimize dependencies. These | |
2260 | functions only use native Julia code, so there is no need to depend on | |
2261 | @code{librmath} or similar libraries.") | |
2262 | (license license:expat))) | |
2263 | ||
45debc7b | 2264 | (define-public julia-macrotools |
2265 | (package | |
2266 | (name "julia-macrotools") | |
2267 | (version "0.5.6") | |
2268 | (source | |
2269 | (origin | |
2270 | (method git-fetch) | |
2271 | (uri (git-reference | |
2272 | (url "https://github.com/FluxML/MacroTools.jl") | |
2273 | (commit (string-append "v" version)))) | |
2274 | (file-name (git-file-name name version)) | |
2275 | (sha256 | |
2276 | (base32 "0k4z2hyasd9cwxf4l61zk3w4ajs44k69wx6z1ghdn8f5p8xy217f")))) | |
2277 | (build-system julia-build-system) | |
2278 | (home-page "https://fluxml.ai/MacroTools.jl") | |
2279 | (synopsis "Tools for working with Julia code and expressions") | |
2280 | (description "This library provides tools for working with Julia code and | |
2281 | expressions. This includes a template-matching system and code-walking tools | |
2282 | that let you do deep transformations of code.") | |
2283 | (license license:expat))) | |
2284 | ||
ea03851b EF |
2285 | (define-public julia-mappedarrays |
2286 | (package | |
2287 | (name "julia-mappedarrays") | |
2288 | (version "0.4.0") | |
2289 | (source | |
2290 | (origin | |
2291 | (method git-fetch) | |
2292 | (uri (git-reference | |
2293 | (url "https://github.com/JuliaArrays/MappedArrays.jl") | |
2294 | (commit (string-append "v" version)))) | |
2295 | (file-name (git-file-name name version)) | |
2296 | (sha256 | |
2297 | (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3")))) | |
2298 | (build-system julia-build-system) | |
2299 | (propagated-inputs | |
2300 | `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) | |
2301 | (native-inputs | |
2302 | `(("julia-colortypes" ,julia-colortypes) | |
2303 | ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
2304 | ("julia-offsetarrays" ,julia-offsetarrays))) | |
2305 | (home-page "https://github.com/JuliaArrays/MappedArrays.jl") | |
2306 | (synopsis "Lazy in-place transformations of arrays") | |
2307 | (description "This package implements \"lazy\" in-place elementwise | |
2308 | transformations of arrays for the Julia programming language. Explicitly, it | |
2309 | provides a \"view\" M of an array A so that @code{M[i] = f(A[i])} for a | |
2310 | specified (but arbitrary) function f, without ever having to compute M | |
2311 | explicitly (in the sense of allocating storage for M). The name of the package | |
2312 | comes from the fact that @code{M == map(f, A)}.") | |
2313 | (license license:expat))) | |
2314 | ||
fa945a54 EF |
2315 | (define-public julia-matrixfactorizations |
2316 | (package | |
2317 | (name "julia-matrixfactorizations") | |
2318 | (version "0.8.3") | |
2319 | (source | |
2320 | (origin | |
2321 | (method git-fetch) | |
2322 | (uri (git-reference | |
2323 | (url "https://github.com/JuliaMatrices/MatrixFactorizations.jl") | |
2324 | (commit (string-append "v" version)))) | |
2325 | (file-name (git-file-name name version)) | |
2326 | (sha256 | |
2327 | (base32 "14c6w1vhyf4pi4454pdp6ryczsxn9pgjg99fg9bkdj03xg5fsxb8")))) | |
2328 | (build-system julia-build-system) | |
2329 | (arguments | |
2330 | `(#:phases | |
2331 | (modify-phases %standard-phases | |
2332 | (add-after 'unpack 'skip-failing-test | |
2333 | (lambda _ | |
2334 | ;; Tests with math functions are hard. | |
2335 | (substitute* "test/test_ul.jl" | |
2336 | (("@test @inferred\\(logdet") "@test @test_nowarn(logdet") | |
2337 | ;; Also skip the REPL test. | |
2338 | (("test String") "test_nowarn String")) | |
2339 | #t))))) | |
2340 | (propagated-inputs | |
2341 | `(("julia-arraylayouts" ,julia-arraylayouts))) | |
2342 | (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl") | |
2343 | (synopsis "Julia package to contain non-standard matrix factorizations") | |
2344 | (description "A Julia package to contain non-standard matrix factorizations. | |
2345 | At the moment it implements the QL, RQ, and UL factorizations, a combined | |
2346 | Cholesky factorization with inverse, and polar decompositions. In the future it | |
2347 | may include other factorizations such as the LQ factorization.") | |
2348 | (license license:expat))) | |
2349 | ||
a72d3ca8 | 2350 | (define-public julia-mbedtls |
2351 | (package | |
2352 | (name "julia-mbedtls") | |
2353 | (version "1.0.3") | |
2354 | (source | |
2355 | (origin | |
2356 | (method git-fetch) | |
2357 | (uri (git-reference | |
2358 | (url "https://github.com/JuliaLang/MbedTLS.jl") | |
2359 | (commit (string-append "v" version)))) | |
2360 | (file-name (git-file-name name version)) | |
2361 | (sha256 | |
2362 | (base32 "0zjzf2r57l24n3k0gcqkvx3izwn5827iv9ak0lqix0aa5967wvfb")))) | |
2363 | (build-system julia-build-system) | |
2364 | (arguments | |
2365 | `(#:phases | |
2366 | (modify-phases %standard-phases | |
2367 | (add-before 'install 'disable-network-tests | |
2368 | ;; Tries to connect to httpbin.org | |
2369 | (lambda _ | |
2370 | (substitute* "test/runtests.jl" | |
2371 | (("testhost =") "return #")) | |
2372 | #t))))) | |
2373 | (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll))) | |
2374 | (home-page "https://github.com/JuliaLang/MbedTLS.jl") | |
2375 | (synopsis "Apache's mbed TLS library wrapper") | |
2376 | (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed | |
9a2d7e0f | 2377 | TLS} and cryptography C library for Julia.") |
a72d3ca8 | 2378 | (license license:expat))) |
2379 | ||
9d6bf9a2 EF |
2380 | (define-public julia-measures |
2381 | (package | |
2382 | (name "julia-measures") | |
2383 | (version "0.3.1") | |
2384 | (source | |
2385 | (origin | |
2386 | (method git-fetch) | |
2387 | (uri (git-reference | |
2388 | (url "https://github.com/JuliaGraphics/Measures.jl") | |
2389 | (commit (string-append "v" version)))) | |
2390 | (file-name (git-file-name name version)) | |
2391 | (sha256 | |
2392 | (base32 "0j34psrdijnqqn9zv0r2sknr1p9q0mmbjvjhmjra37bb5fh2gk8l")))) | |
2393 | (build-system julia-build-system) | |
2394 | (home-page "https://github.com/JuliaGraphics/Measures.jl") | |
2395 | (synopsis "Unified measure and coordinates types") | |
2396 | (description "This library generalizes and unifies the notion of measures | |
2397 | used in Compose, Compose3D, and Escher. It allows building up and representing | |
2398 | expressions involving differing types of units that are then evaluated, | |
2399 | resolving them into absolute units.") | |
2400 | (license license:expat))) | |
2401 | ||
db2bfcb9 EF |
2402 | (define-public julia-missings |
2403 | (package | |
2404 | (name "julia-missings") | |
2405 | (version "1.0.0") | |
2406 | (source | |
2407 | (origin | |
2408 | (method git-fetch) | |
2409 | (uri (git-reference | |
2410 | (url "https://github.com/JuliaData/Missings.jl") | |
2411 | (commit (string-append "v" version)))) | |
2412 | (file-name (git-file-name name version)) | |
2413 | (sha256 | |
2414 | (base32 "131ma44yvswvj85jdjhm37frzfz46cc60lwj65a9jcmgc77dshsm")))) | |
2415 | (build-system julia-build-system) | |
2416 | (propagated-inputs | |
2417 | `(("julia-dataapi" ,julia-dataapi))) | |
2418 | (home-page "https://github.com/JuliaData/Missings.jl") | |
2419 | (synopsis "Additional missing value support for Julia") | |
2420 | (description "This package provides additional functionality for working | |
2421 | with @code{missing} values in Julia.") | |
2422 | (license license:expat))) | |
2423 | ||
f273a4b7 EF |
2424 | (define-public julia-mocking |
2425 | (package | |
2426 | (name "julia-mocking") | |
2427 | (version "0.7.1") | |
2428 | (source | |
2429 | (origin | |
2430 | (method git-fetch) | |
2431 | (uri (git-reference | |
2432 | (url "https://github.com/invenia/Mocking.jl") | |
2433 | (commit (string-append "v" version)))) | |
2434 | (file-name (git-file-name name version)) | |
2435 | (sha256 | |
2436 | (base32 "10jz716v6i3gpd403rmcrip6cncjl9lqr12cdl321x1994a5g8ck")))) | |
2437 | (build-system julia-build-system) | |
2438 | (propagated-inputs | |
2439 | `(("julia-exprtools" ,julia-exprtools))) | |
2440 | (home-page "https://github.com/invenia/Mocking.jl") | |
2441 | (synopsis "Overload Julia function calls") | |
2442 | (description "The purpose of this package is to allow Julia function calls | |
2443 | to be temporarily overloaded for the purpose of testing.") | |
2444 | (license license:expat))) | |
2445 | ||
a5dc1742 EF |
2446 | (define-public julia-mosaicviews |
2447 | (package | |
2448 | (name "julia-mosaicviews") | |
2449 | (version "0.3.3") | |
2450 | (source | |
2451 | (origin | |
2452 | (method git-fetch) | |
2453 | (uri (git-reference | |
2454 | (url "https://github.com/JuliaArrays/MosaicViews.jl") | |
2455 | (commit (string-append "v" version)))) | |
2456 | (file-name (git-file-name name version)) | |
2457 | (sha256 | |
2458 | (base32 "04fgxghyb7n2ji76xkb1r1fjhzsdbgmp5wsfyyn3yjcsdqbyp8pz")))) | |
2459 | (build-system julia-build-system) | |
2460 | (arguments | |
2461 | `(#:tests? #f)) ; Cycle with ImageCore.jl | |
2462 | (propagated-inputs | |
2463 | `(("julia-mappedarrays" ,julia-mappedarrays) | |
2464 | ("julia-paddedviews" ,julia-paddedviews) | |
2465 | ("julia-stackviews" ,julia-stackviews))) | |
2466 | ;(native-inputs | |
2467 | ; `(("julia-colorvectorspace" ,julia-colorvectorspace) | |
2468 | ; ("julia-imagecore" ,julia-imagecore))) | |
2469 | (home-page "https://github.com/JuliaArrays/MosaicViews.jl") | |
2470 | (synopsis | |
2471 | "Lazily view a 3D or 4D array as an expanded 2D array as a matrix of slices") | |
2472 | (description "When visualizing images, it is not uncommon to provide a 2D | |
2473 | view of different image sources. For example, comparing multiple images of | |
2474 | different sizes, getting a preview of machine learning dataset. This package | |
2475 | aims to provide easy-to-use tools for such tasks.") | |
2476 | (license license:expat))) | |
2477 | ||
860ca285 EF |
2478 | (define-public julia-msgpack |
2479 | (package | |
2480 | (name "julia-msgpack") | |
2481 | (version "1.1.0") | |
2482 | (source | |
2483 | (origin | |
2484 | (method git-fetch) | |
2485 | (uri (git-reference | |
2486 | (url "https://github.com/JuliaIO/MsgPack.jl") | |
2487 | (commit (string-append "v" version)))) | |
2488 | (file-name (git-file-name name version)) | |
2489 | (sha256 | |
2490 | (base32 "1layiqjf9si38pfdcszppgcy4zbfqgld7jlw8x645sm9b17b19fg")))) | |
2491 | (build-system julia-build-system) | |
2492 | (home-page "https://github.com/JuliaIO/MsgPack.jl") | |
2493 | (synopsis "Julia MsgPack implementation") | |
2494 | (description "@code{MsgPack.jl} is a MessagePack implementation in pure | |
2495 | Julia, with type-driven, overloadable packing/unpacking functionality.") | |
2496 | (license license:expat))) | |
2497 | ||
8f7d9ce2 EF |
2498 | (define-public julia-mutablearithmetics |
2499 | (package | |
2500 | (name "julia-mutablearithmetics") | |
2501 | (version "0.2.19") | |
2502 | (source | |
2503 | (origin | |
2504 | (method git-fetch) | |
2505 | (uri (git-reference | |
2506 | (url "https://github.com/jump-dev/MutableArithmetics.jl") | |
2507 | (commit (string-append "v" version)))) | |
2508 | (file-name (git-file-name name version)) | |
2509 | (sha256 | |
2510 | (base32 "1zjfq5sh0rc941pbc9kvnr6a2lpr4yd276mw62vbncbz9jg52rrg")))) | |
2511 | (build-system julia-build-system) | |
2512 | (propagated-inputs | |
2513 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2514 | (home-page "https://github.com/jump-dev/MutableArithmetics.jl") | |
2515 | (synopsis "Interface for arithmetics on mutable types in Julia") | |
2516 | (description "MutableArithmetics is a Julia package which allows: | |
2517 | @itemize | |
2518 | @item mutable types to implement mutable arithmetics | |
2519 | @item algorithms that could exploit mutable arithmetics to exploit them while | |
2520 | still being completely generic | |
2521 | @end itemize") | |
2522 | (license license:mpl2.0))) | |
2523 | ||
a5edd83d | 2524 | (define-public julia-nanmath |
2525 | (package | |
2526 | (name "julia-nanmath") | |
2527 | (version "0.3.5") | |
2528 | (source | |
2529 | (origin | |
2530 | (method git-fetch) | |
2531 | (uri (git-reference | |
2532 | (url "https://github.com/mlubin/NaNMath.jl") | |
2533 | (commit (string-append "v" version)))) | |
2534 | (file-name (git-file-name name version)) | |
2535 | (sha256 | |
2536 | (base32 "1hczhz00qj99w63vp627kwk02l2sr2qmzc2rkwwkdwvzy670p25q")))) | |
2537 | (build-system julia-build-system) | |
2538 | (home-page "https://github.com/mlubin/NaNMath.jl") | |
2539 | (synopsis "Implementations of basic math functions") | |
2540 | (description "Implementations of basic math functions which return | |
2541 | @code{NaN} instead of throwing a @code{DomainError}.") | |
2542 | (license license:expat))) | |
2543 | ||
f52f7a30 EF |
2544 | (define-public julia-nlsolversbase |
2545 | (package | |
2546 | (name "julia-nlsolversbase") | |
2547 | (version "7.8.0") | |
2548 | (source | |
2549 | (origin | |
2550 | (method git-fetch) | |
2551 | (uri (git-reference | |
2552 | (url "https://github.com/JuliaNLSolvers/NLSolversBase.jl") | |
2553 | (commit (string-append "v" version)))) | |
2554 | (file-name (git-file-name name version)) | |
2555 | (sha256 | |
2556 | (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98")))) | |
2557 | (build-system julia-build-system) | |
2558 | (propagated-inputs | |
2559 | `(("julia-diffresults" ,julia-diffresults) | |
2560 | ("julia-finitediff" ,julia-finitediff) | |
2561 | ("julia-forwarddiff" ,julia-forwarddiff))) | |
2562 | (native-inputs | |
2563 | `(("julia-optimtestproblems" ,julia-optimtestproblems) | |
2564 | ("julia-recursivearraytools" ,julia-recursivearraytools))) | |
2565 | (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl") | |
2566 | (synopsis "Optimization and equation solver software in JuliaNLSolvers") | |
2567 | (description "This package aims at establishing common ground for Optim.jl, | |
2568 | LineSearches.jl, and NLsolve.jl. The common ground is mainly the types used to | |
2569 | hold objective related callables, information about the objectives, and an | |
2570 | interface to interact with these types.") | |
2571 | (license license:expat))) | |
2572 | ||
5be9b3fd EF |
2573 | (define-public julia-nnlib |
2574 | (package | |
2575 | (name "julia-nnlib") | |
2576 | (version "0.7.19") | |
2577 | (source | |
2578 | (origin | |
2579 | (method git-fetch) | |
2580 | (uri (git-reference | |
2581 | (url "https://github.com/FluxML/NNlib.jl") | |
2582 | (commit (string-append "v" version)))) | |
2583 | (file-name (git-file-name name version)) | |
2584 | (sha256 | |
2585 | (base32 "163v7hkmbxxgnq7qigmqjdqcdywi2njxbh54w8v0hf4bddnalbba")))) | |
2586 | (build-system julia-build-system) | |
2587 | (arguments | |
2588 | `(#:phases | |
2589 | (modify-phases %standard-phases | |
2590 | (add-after 'unpack 'drop-cuda-support | |
2591 | (lambda _ | |
2592 | (substitute* "test/runtests.jl" | |
2593 | (("using CUDA") "")) | |
2594 | (setenv "NNLIB_TEST_CUDA" "false")))))) | |
2595 | (propagated-inputs | |
2596 | `(("julia-adapt" ,julia-adapt) | |
2597 | ("julia-chainrulescore" ,julia-chainrulescore) | |
2598 | ("julia-requires" ,julia-requires))) | |
2599 | (native-inputs | |
2600 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils) | |
2601 | ("julia-stablerngs" ,julia-stablerngs) | |
2602 | ("julia-zygote" ,julia-zygote))) | |
2603 | (home-page "https://github.com/FluxML/NNlib.jl") | |
2604 | (synopsis "Neural Network primitives with multiple backends") | |
2605 | (description "This package will provide a library of functions useful for | |
2606 | machine learning, such as softmax, sigmoid, convolutions and pooling. It | |
2607 | doesn't provide any other \"high-level\" functionality like layers or AD.") | |
2608 | (license license:expat))) | |
2609 | ||
2615a8ba EF |
2610 | (define-public julia-optimtestproblems |
2611 | (package | |
2612 | (name "julia-optimtestproblems") | |
2613 | (version "2.0.2") | |
2614 | (source | |
2615 | (origin | |
2616 | (method git-fetch) | |
2617 | (uri (git-reference | |
2618 | (url "https://github.com/JuliaNLSolvers/OptimTestProblems.jl") | |
2619 | (commit (string-append "v" version)))) | |
2620 | (file-name (git-file-name name version)) | |
2621 | (sha256 | |
2622 | (base32 "10h47x5ws42pkqjccimaz0yxfvz41w0yazq6inamfk4lg5g2g3d9")))) | |
2623 | (build-system julia-build-system) | |
2624 | (arguments | |
2625 | `(#:julia-package-name "OptimTestProblems")) | |
2626 | (home-page "https://github.com/JuliaNLSolvers/OptimTestProblems.jl") | |
2627 | (synopsis "Collection of optimization test problems") | |
2628 | (description "The purpose of this package is to provide test problems for | |
2629 | JuliaNLSolvers packages.") | |
2630 | (license license:expat))) | |
2631 | ||
eccd448c | 2632 | (define-public julia-orderedcollections |
2633 | (package | |
2634 | (name "julia-orderedcollections") | |
8812aead | 2635 | (version "1.4.1") |
eccd448c | 2636 | (source |
2637 | (origin | |
2638 | (method git-fetch) | |
2639 | (uri (git-reference | |
2640 | (url "https://github.com/JuliaCollections/OrderedCollections.jl") | |
2641 | (commit (string-append "v" version)))) | |
2642 | (file-name (git-file-name name version)) | |
2643 | (sha256 | |
8812aead | 2644 | (base32 "0jaxcmvkp8zpqrz101yikdigz90s70i7in5wn8kybwzf0na3lhwf")))) |
eccd448c | 2645 | (build-system julia-build-system) |
2646 | (home-page "https://github.com/JuliaCollections/OrderedCollections.jl") | |
2647 | (synopsis "Associative containers that preserve insertion order") | |
2648 | (description "This package implements @code{OrderedDicts} and | |
2649 | @code{OrderedSets}, which are similar to containers in base Julia. However, | |
2650 | during iteration the @code{Ordered*} containers return items in the order in | |
2651 | which they were added to the collection.") | |
2652 | (license license:expat))) | |
c0c21d77 | 2653 | |
fb634a0e | 2654 | (define-public julia-offsetarrays |
2655 | (package | |
2656 | (name "julia-offsetarrays") | |
f862cb75 | 2657 | (version "1.9.2") |
fb634a0e | 2658 | (source |
2659 | (origin | |
2660 | (method git-fetch) | |
2661 | (uri (git-reference | |
2662 | (url "https://github.com/JuliaArrays/OffsetArrays.jl") | |
2663 | (commit (string-append "v" version)))) | |
2664 | (file-name (git-file-name name version)) | |
2665 | (sha256 | |
f862cb75 | 2666 | (base32 "10mycjmjlp80c1bsdmk1hnb5hg81zqd2dcxyaa9p55ykla051a9q")))) |
fb634a0e | 2667 | (build-system julia-build-system) |
2668 | (propagated-inputs | |
2669 | `(("julia-adapt" ,julia-adapt))) | |
2670 | ;; CatIndices depends on OffsetArrays, introducing a recursive dependency | |
2671 | (arguments '(#:tests? #f)) | |
2672 | (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/") | |
2673 | (synopsis "Fortran-like arrays with arbitrary, zero or negative indices") | |
2674 | (description "@code{OffsetArrays.jl} provides Julia users with arrays that | |
2675 | have arbitrary indices, similar to those found in some other programming | |
2676 | languages like Fortran.") | |
2677 | (license license:expat))) | |
2678 | ||
99492890 EF |
2679 | (define-public julia-paddedviews |
2680 | (package | |
2681 | (name "julia-paddedviews") | |
2682 | (version "0.5.8") | |
2683 | (source | |
2684 | (origin | |
2685 | (method git-fetch) | |
2686 | (uri (git-reference | |
2687 | (url "https://github.com/JuliaArrays/PaddedViews.jl") | |
2688 | (commit (string-append "v" version)))) | |
2689 | (file-name (git-file-name name version)) | |
2690 | (sha256 | |
2691 | (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h")))) | |
2692 | (build-system julia-build-system) | |
2693 | (arguments | |
2694 | '(#:tests? #f)) ;require Documenter, not packaged yet | |
2695 | (propagated-inputs | |
2696 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
2697 | (home-page "https://github.com/JuliaArrays/PaddedViews.jl") | |
2698 | (synopsis "Add virtual padding to the edges of an array") | |
2699 | (description "@code{PaddedViews} provides a simple wrapper type, | |
2700 | @code{PaddedView}, to add \"virtual\" padding to any array without copying data. | |
2701 | Edge values not specified by the array are assigned a @code{fillvalue}. | |
2702 | Multiple arrays may be \"promoted\" to have common indices using the | |
2703 | @code{paddedviews} function.") | |
2704 | (license license:expat))) | |
2705 | ||
dd331f49 EF |
2706 | (define-public julia-parameters |
2707 | (package | |
2708 | (name "julia-parameters") | |
2709 | (version "0.12.2") | |
2710 | (source | |
2711 | (origin | |
2712 | (method git-fetch) | |
2713 | (uri (git-reference | |
2714 | (url "https://github.com/mauro3/Parameters.jl") | |
2715 | (commit (string-append "v" version)))) | |
2716 | (file-name (git-file-name name version)) | |
2717 | (sha256 | |
2718 | (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2")))) | |
2719 | (build-system julia-build-system) | |
2720 | (propagated-inputs | |
2721 | `(("julia-orderedcollections" ,julia-orderedcollections) | |
2722 | ("julia-unpack" ,julia-unpack))) | |
2723 | (home-page "https://github.com/mauro3/Parameters.jl") | |
2724 | (synopsis "Numerical-model parameter helpers") | |
2725 | (description "This package contains types with default field values, keyword | |
2726 | constructors and (un-)pack macros. Keyword functions can be slow in Julia, | |
2727 | however, the normal positional constructor is also provided and could be used in | |
2728 | performance critical code.") | |
2729 | (license license:expat))) | |
2730 | ||
c0c21d77 | 2731 | (define-public julia-parsers |
2732 | (package | |
2733 | (name "julia-parsers") | |
165a85a6 | 2734 | (version "1.1.0") |
c0c21d77 | 2735 | (source |
2736 | (origin | |
2737 | (method git-fetch) | |
2738 | (uri (git-reference | |
2739 | (url "https://github.com/JuliaData/Parsers.jl") | |
2740 | (commit (string-append "v" version)))) | |
2741 | (file-name (git-file-name name version)) | |
2742 | (sha256 | |
165a85a6 | 2743 | (base32 "1gz3drd5334xrbx2ms33hiifkd0q1in4ywc92xvrkq3xgzdjqjdk")))) |
c0c21d77 | 2744 | (build-system julia-build-system) |
2745 | (home-page "https://github.com/JuliaData/Parsers.jl") | |
2746 | (synopsis "Fast parsing machinery for basic types in Julia") | |
2747 | (description "@code{Parsers.jl} is a collection of type parsers and | |
2748 | utilities for Julia.") | |
2749 | (license license:expat))) | |
8f59a9fb | 2750 | |
9e30f659 EF |
2751 | (define-public julia-pdmats |
2752 | (package | |
2753 | (name "julia-pdmats") | |
a424ebde | 2754 | (version "0.11.1") |
9e30f659 EF |
2755 | (source |
2756 | (origin | |
2757 | (method git-fetch) | |
2758 | (uri (git-reference | |
2759 | (url "https://github.com/JuliaStats/PDMats.jl") | |
2760 | (commit (string-append "v" version)))) | |
2761 | (file-name (git-file-name name version)) | |
2762 | (sha256 | |
a424ebde | 2763 | (base32 "0bc2gmpd30rkclvxyfnssjllp0pk63h0vvgr8862phm5ia83r8j0")))) |
9e30f659 EF |
2764 | (build-system julia-build-system) |
2765 | (home-page "https://github.com/JuliaStats/PDMats.jl") | |
2766 | (synopsis | |
2767 | "Uniform Interface for positive definite matrices of various structures") | |
2768 | (description "PDMats.jl supports efficient computation on positive definite | |
2769 | matrices of various structures. In particular, it provides uniform interfaces | |
2770 | to use positive definite matrices of various structures for writing generic | |
2771 | algorithms, while ensuring that the most efficient implementation is used in | |
2772 | actual computation.") | |
2773 | (license license:expat))) | |
f11621f1 | 2774 | |
ab942d5c EF |
2775 | (define-public julia-plotthemes |
2776 | (package | |
2777 | (name "julia-plotthemes") | |
2778 | (version "2.0.1") | |
2779 | (source | |
2780 | (origin | |
2781 | (method git-fetch) | |
2782 | (uri (git-reference | |
2783 | (url "https://github.com/JuliaPlots/PlotThemes.jl") | |
2784 | (commit (string-append "v" version)))) | |
2785 | (file-name (git-file-name name version)) | |
2786 | (sha256 | |
2787 | (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh")))) | |
2788 | (build-system julia-build-system) | |
2789 | (propagated-inputs | |
2790 | `(("julia-plotutils" ,julia-plotutils) | |
2791 | ("julia-requires" ,julia-requires))) | |
2792 | (home-page "https://github.com/JuliaPlots/PlotThemes.jl") | |
2793 | (synopsis "Themes for the Julia plotting package Plots.jl") | |
2794 | (description | |
2795 | "PlotThemes is a package to spice up the plots made with @code{Plots.jl}.") | |
2796 | (license license:expat))) | |
2797 | ||
f11621f1 EF |
2798 | (define-public julia-plotutils |
2799 | (package | |
2800 | (name "julia-plotutils") | |
2801 | (version "1.0.10") | |
2802 | (source | |
2803 | (origin | |
2804 | (method git-fetch) | |
2805 | (uri (git-reference | |
2806 | (url "https://github.com/JuliaPlots/PlotUtils.jl") | |
2807 | (commit (string-append "v" version)))) | |
2808 | (file-name (git-file-name name version)) | |
2809 | (sha256 | |
2810 | (base32 | |
2811 | "1jimdkp590g7s33w7i431nn7mp1phjy9gdjs88zyqsmq5hxldacg")))) | |
2812 | (build-system julia-build-system) | |
2813 | (propagated-inputs | |
2814 | `(("julia-colors" ,julia-colors) | |
2815 | ("julia-colorschemes" ,julia-colorschemes) | |
2816 | ("julia-reexport" ,julia-reexport))) | |
2817 | (native-inputs | |
2818 | `(("julia-stablerngs" ,julia-stablerngs))) | |
2819 | (home-page "https://github.com/JuliaPlots/PlotUtils.jl") | |
2820 | (synopsis "Helper algorithms for building plotting components") | |
d342d066 | 2821 | (description "This package contains generic helper algorithms for building |
f11621f1 EF |
2822 | plotting components.") |
2823 | (license license:expat))) | |
28afc9ba | 2824 | |
9f92c8b5 EF |
2825 | (define-public julia-pooledarrays |
2826 | (package | |
2827 | (name "julia-pooledarrays") | |
2828 | (version "1.2.1") | |
2829 | (source | |
2830 | (origin | |
2831 | (method git-fetch) | |
2832 | (uri (git-reference | |
2833 | (url "https://github.com/JuliaData/PooledArrays.jl") | |
2834 | (commit (string-append "v" version)))) | |
2835 | (file-name (git-file-name name version)) | |
2836 | (sha256 | |
2837 | (base32 "0ihvhzkxdw4qf0i6sbrickhdcwkmlin9zyixxn9xvgzm8nc0iwqy")))) | |
2838 | (build-system julia-build-system) | |
2839 | (propagated-inputs | |
2840 | `(("julia-dataapi" ,julia-dataapi))) | |
2841 | (home-page "https://github.com/JuliaData/PooledArrays.jl") | |
2842 | (synopsis "Pooled representation of arrays in Julia") | |
2843 | (description "This package provides a pooled representation of arrays for | |
2844 | purposes of compression when there are few unique elements.") | |
2845 | (license license:expat))) | |
2846 | ||
ed6c0f85 EF |
2847 | (define-public julia-positivefactorizations |
2848 | (package | |
2849 | (name "julia-positivefactorizations") | |
2850 | (version "0.2.4") | |
2851 | (source | |
2852 | (origin | |
2853 | (method git-fetch) | |
2854 | (uri (git-reference | |
2855 | (url "https://github.com/timholy/PositiveFactorizations.jl") | |
2856 | (commit (string-append "v" version)))) | |
2857 | (file-name (git-file-name name version)) | |
2858 | (sha256 | |
2859 | (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23")))) | |
2860 | (build-system julia-build-system) | |
2861 | (native-inputs | |
2862 | `(("julia-forwarddiff" ,julia-forwarddiff) | |
2863 | ("julia-reversediff" ,julia-reversediff))) | |
2864 | (home-page "https://github.com/timholy/PositiveFactorizations.jl") | |
2865 | (synopsis "Positive-definite \"approximations\" to matrices") | |
2866 | (description "@code{PositiveFactorizations} is a package for computing a | |
2867 | positive definite matrix decomposition (factorization) from an arbitrary | |
2868 | symmetric input. The motivating application is optimization (Newton or | |
2869 | quasi-Newton methods), in which the canonical search direction -H/g (H being the | |
2870 | Hessian and g the gradient) may not be a descent direction if H is not positive | |
2871 | definite.") | |
2872 | (license license:expat))) | |
2873 | ||
d2d1f8bf EF |
2874 | (define-public julia-prettytables |
2875 | (package | |
2876 | (name "julia-prettytables") | |
2877 | (version "1.0.1") | |
2878 | (source | |
2879 | (origin | |
2880 | (method git-fetch) | |
2881 | (uri (git-reference | |
2882 | (url "https://github.com/ronisbr/PrettyTables.jl") | |
2883 | (commit (string-append "v" version)))) | |
2884 | (file-name (git-file-name name version)) | |
2885 | (sha256 | |
2886 | (base32 "1d1sd87kkwbar3l608h0adzws42cwdrmp1idxx7an6mfqcsdrijw")))) | |
2887 | (build-system julia-build-system) | |
2888 | (arguments | |
2889 | `(#:phases | |
2890 | (modify-phases %standard-phases | |
2891 | (add-after 'unpack 'skip-color-tests | |
2892 | (lambda _ | |
2893 | (substitute* "test/text_backend.jl" | |
2894 | ((".*colors\\.jl.*") "")) | |
2895 | #t))))) | |
2896 | (propagated-inputs | |
2897 | `(("julia-crayons" ,julia-crayons) | |
2898 | ("julia-formatting" ,julia-formatting) | |
2899 | ("julia-reexport" ,julia-reexport) | |
2900 | ("julia-tables" ,julia-tables))) | |
2901 | (home-page "https://github.com/ronisbr/PrettyTables.jl") | |
2902 | (synopsis "Print data in formatted tables") | |
2903 | (description "This package has the purpose to print data in matrices in a | |
2904 | human-readable format.") | |
2905 | (license license:expat))) | |
2906 | ||
277fef20 EF |
2907 | (define-public julia-quadmath |
2908 | (package | |
2909 | (name "julia-quadmath") | |
2910 | (version "0.5.5") | |
2911 | (source | |
2912 | (origin | |
2913 | (method git-fetch) | |
2914 | (uri (git-reference | |
2915 | (url "https://github.com/JuliaMath/Quadmath.jl") | |
2916 | (commit (string-append "v" version)))) | |
2917 | (file-name (git-file-name name version)) | |
2918 | (sha256 | |
2919 | (base32 "051biw4b9zni7cmh2f1yzifp1v8wazlfxrdz4p44lyd1wba6379w")))) | |
2920 | (build-system julia-build-system) | |
2921 | (arguments | |
2922 | `(#:phases | |
2923 | (modify-phases %standard-phases | |
2924 | (add-after 'unpack 'hardcode-libmath-location | |
2925 | (lambda* (#:key inputs #:allow-other-keys) | |
2926 | (let ((gcclib (assoc-ref inputs "gcc:lib"))) | |
2927 | (substitute* "src/Quadmath.jl" | |
2928 | (("libgcc_s.so.1" lib) (string-append gcclib "/lib/" lib)) | |
2929 | (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib))) | |
2930 | #t)))))) | |
2931 | (propagated-inputs | |
2932 | `(("julia-requires" ,julia-requires))) | |
2933 | (inputs | |
2934 | `(("gcc:lib" ,gcc "lib"))) | |
2935 | (native-inputs | |
2936 | `(("julia-specialfunctions" ,julia-specialfunctions))) | |
2937 | (home-page "https://github.com/JuliaMath/Quadmath.jl") | |
2938 | (synopsis "Float128 and libquadmath for the Julia language") | |
2939 | (description "This is a Julia interface to @code{libquadmath}, providing a | |
2940 | @code{Float128} type corresponding to the IEEE754 binary128 floating point | |
2941 | format.") | |
2942 | (license license:expat))) | |
2943 | ||
12289754 EF |
2944 | (define-public julia-quaternions |
2945 | (package | |
2946 | (name "julia-quaternions") | |
2947 | (version "0.4.2") | |
2948 | (source | |
2949 | (origin | |
2950 | (method git-fetch) | |
2951 | (uri (git-reference | |
2952 | (url "https://github.com/JuliaGeometry/Quaternions.jl") | |
2953 | (commit (string-append "v" version)))) | |
2954 | (file-name (git-file-name name version)) | |
2955 | (sha256 | |
2956 | (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s")))) | |
2957 | (build-system julia-build-system) | |
2958 | (propagated-inputs | |
2959 | `(("julia-dualnumbers" ,julia-dualnumbers))) | |
2960 | (home-page "https://github.com/JuliaGeometry/Quaternions.jl") | |
2961 | (synopsis "Quaternion and dual-quaternion functionality") | |
2962 | (description "Quaternions are best known for their suitability as | |
2963 | representations of 3D rotational orientation. They can also be viewed as an | |
2964 | extension of complex numbers.") | |
2965 | (license license:expat))) | |
2966 | ||
209a80c1 EF |
2967 | (define-public julia-queryoperators |
2968 | (package | |
2969 | (name "julia-queryoperators") | |
2970 | (version "0.9.3") | |
2971 | (source | |
2972 | (origin | |
2973 | (method git-fetch) | |
2974 | (uri (git-reference | |
2975 | (url "https://github.com/queryverse/QueryOperators.jl") | |
2976 | (commit (string-append "v" version)))) | |
2977 | (file-name (git-file-name name version)) | |
2978 | (sha256 | |
2979 | (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22")))) | |
2980 | (build-system julia-build-system) | |
2981 | (propagated-inputs | |
2982 | `(("julia-datastructures" ,julia-datastructures) | |
2983 | ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) | |
2984 | ("julia-tableshowutils" ,julia-tableshowutils))) | |
2985 | (home-page "https://github.com/queryverse/QueryOperators.jl") | |
2986 | (synopsis "Query operators for Julia") | |
2987 | (description "This package contains the underlying query operators that are | |
2988 | exposed to users in @code{Query.jl}.") | |
2989 | (license license:expat))) | |
2990 | ||
a3369594 EF |
2991 | (define-public julia-rangearrays |
2992 | (package | |
2993 | (name "julia-rangearrays") | |
2994 | (version "0.3.2") | |
2995 | (source | |
2996 | (origin | |
2997 | (method git-fetch) | |
2998 | (uri (git-reference | |
2999 | (url "https://github.com/JuliaArrays/RangeArrays.jl") | |
3000 | (commit (string-append "v" version)))) | |
3001 | (file-name (git-file-name name version)) | |
3002 | (sha256 | |
3003 | (base32 "1ihzfyfq1xihkjcvn7xmzfbn6igzidb4fkzdcxwfr5qkvi52gnmg")))) | |
3004 | (build-system julia-build-system) | |
3005 | (home-page "https://github.com/JuliaArrays/RangeArrays.jl") | |
3006 | (synopsis "Array data structures with autogenerated columns") | |
3007 | (description "The goal of RangeArrays is to provide efficient and convenient | |
3008 | array data structures where the columns of the arrays are generated (on the fly) | |
3009 | by Ranges.") | |
3010 | (license license:expat))) | |
3011 | ||
b2ca58be EF |
3012 | (define-public julia-ratios |
3013 | (package | |
3014 | (name "julia-ratios") | |
3015 | (version "0.4.0") | |
3016 | (source | |
3017 | (origin | |
3018 | (method git-fetch) | |
3019 | (uri (git-reference | |
3020 | (url "https://github.com/timholy/Ratios.jl") | |
3021 | (commit (string-append "v" version)))) | |
3022 | (file-name (git-file-name name version)) | |
3023 | (sha256 | |
3024 | (base32 "1a4fd4jq4qjply29rkwg3m1clfndjsbckj1b1dab1bc35h2c6yxh")))) | |
3025 | (build-system julia-build-system) | |
3026 | (home-page "https://github.com/timholy/Ratios.jl") | |
3027 | (synopsis "Faster Rational-like types for Julia") | |
3028 | (description "This package provides types similar to Julia's @code{Rational} | |
3029 | type, which make some sacrifices but have better computational performance.") | |
3030 | (license license:expat))) | |
3031 | ||
28afc9ba EF |
3032 | (define-public julia-recipesbase |
3033 | (package | |
3034 | (name "julia-recipesbase") | |
3035 | (version "1.1.1") | |
3036 | (source | |
3037 | (origin | |
3038 | (method git-fetch) | |
3039 | (uri (git-reference | |
3040 | (url "https://github.com/JuliaPlots/RecipesBase.jl") | |
3041 | (commit (string-append "v" version)))) | |
3042 | (file-name (git-file-name name version)) | |
3043 | (sha256 | |
3044 | (base32 "1b6m5rz6wprj30rwvlxz4r1jv5gl0ay0f52kfmy2w7lqly7zhap5")))) | |
3045 | (build-system julia-build-system) | |
3046 | (home-page "https://github.com/JuliaPlots/RecipesBase.jl") | |
3047 | (synopsis "Define transformation recipes on user types") | |
3048 | (description "This package implements handy macros @code{@@recipe} and | |
3049 | @code{@@series} which will define a custom transformation and attach attributes | |
3050 | for user types. Its design is an attempt to simplify and generalize the summary | |
3051 | and display of types and data from external packages. With this package it is | |
3052 | possible to describe visualization routines that can be used as components in | |
3053 | more complex visualizations.") | |
3054 | (license license:expat))) | |
9e30f659 | 3055 | |
ab7d4e85 EF |
3056 | (define-public julia-recipespipeline |
3057 | (package | |
3058 | (name "julia-recipespipeline") | |
3059 | (version "0.3.2") | |
3060 | (source | |
3061 | (origin | |
3062 | (method git-fetch) | |
3063 | (uri (git-reference | |
3064 | (url "https://github.com/JuliaPlots/RecipesPipeline.jl") | |
3065 | (commit (string-append "v" version)))) | |
3066 | (file-name (git-file-name name version)) | |
3067 | (sha256 | |
3068 | (base32 | |
3069 | "0wa342m2d9k4kihr6g9i0wpbsipp0n11kh9jmlw4pc5msmz4rxr0")))) | |
3070 | (build-system julia-build-system) | |
3071 | (arguments | |
3072 | `(#:tests? #f)) ; Cycle with Plots.jl. | |
3073 | (propagated-inputs | |
3074 | `(("julia-nanmath" ,julia-nanmath) | |
3075 | ("julia-plotutils" ,julia-plotutils) | |
3076 | ("julia-recipesbase" ,julia-recipesbase))) | |
3077 | (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/") | |
3078 | (synopsis "Utilities for processing recipes") | |
3079 | (description "This package was factored out of @code{Plots.jl} to allow any | |
3080 | other plotting package to use the recipe pipeline. In short, the extremely | |
3081 | lightweight @code{RecipesBase.jl} package can be depended on by any package to | |
3082 | define \"recipes\": plot specifications of user-defined types, as well as custom | |
3083 | plot types. @code{RecipePipeline.jl} contains the machinery to translate these | |
3084 | recipes to full specifications for a plot.") | |
3085 | (license license:expat))) | |
3086 | ||
01e9e008 EF |
3087 | (define-public julia-recursivearraytools |
3088 | (package | |
3089 | (name "julia-recursivearraytools") | |
3090 | (version "2.11.4") | |
3091 | (source | |
3092 | (origin | |
3093 | (method git-fetch) | |
3094 | (uri (git-reference | |
3095 | (url "https://github.com/SciML/RecursiveArrayTools.jl") | |
3096 | (commit (string-append "v" version)))) | |
3097 | (file-name (git-file-name name version)) | |
3098 | (sha256 | |
3099 | (base32 "14wh39g3l0fzzrkxgxijklilqcgpxsk1d44dfpfl48gsp0n6icjm")))) | |
3100 | (build-system julia-build-system) | |
3101 | (arguments | |
3102 | `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl. | |
3103 | (propagated-inputs | |
3104 | `(("julia-arrayinterface" ,julia-arrayinterface) | |
3105 | ("julia-docstringextensions" ,julia-docstringextensions) | |
3106 | ("julia-requires" ,julia-requires) | |
3107 | ("julia-recipesbase" ,julia-recipesbase) | |
3108 | ("julia-staticarrays" ,julia-staticarrays) | |
3109 | ("julia-zygoterules" ,julia-zygoterules))) | |
3110 | ;(native-inputs | |
3111 | ; `(("julia-forwarddiff" ,julia-forwarddiff) | |
3112 | ; ("julia-nlsolve" ,julia-nlsolve) | |
3113 | ; ("julia-ordinarydiffeq" ,julia-ordinarydiffeq) | |
3114 | ; ("julia-structarrays" ,julia-structarrays) | |
3115 | ; ("julia-unitful" ,julia-unitful) | |
3116 | ; ("julia-zygote" ,julia-zygote))) | |
3117 | (home-page "https://github.com/SciML/RecursiveArrayTools.jl") | |
3118 | (synopsis "Tools for handling objects like arrays of arrays and deeper nestings") | |
3119 | (description "@code{RecursiveArrayTools.jl} is a set of tools for dealing with | |
3120 | recursive arrays like arrays of arrays.") | |
3121 | (license license:expat))) | |
3122 | ||
02543b52 | 3123 | (define-public julia-reexport |
3124 | (package | |
3125 | (name "julia-reexport") | |
d964f9d8 | 3126 | (version "1.1.0") |
02543b52 | 3127 | (source |
3128 | (origin | |
3129 | (method git-fetch) | |
3130 | (uri (git-reference | |
3131 | (url "https://github.com/simonster/Reexport.jl") | |
d964f9d8 | 3132 | (commit (string-append "v" version)))) |
02543b52 | 3133 | (file-name (git-file-name name version)) |
3134 | (sha256 | |
d964f9d8 | 3135 | (base32 "1wj4vnxxmnblm6ajkkdvwb7v4835qrrc406q5is74qv1n68xql7l")))) |
02543b52 | 3136 | (build-system julia-build-system) |
3137 | (home-page "https://github.com/simonster/Reexport.jl") | |
3138 | (synopsis "Re-export modules and symbols") | |
3139 | (description "This package provides tools to re-export modules and symbols.") | |
3140 | (license license:expat))) | |
56753c0f EF |
3141 | |
3142 | (define-public julia-referencetests | |
3143 | (package | |
3144 | (name "julia-referencetests") | |
3145 | (version "0.9.7") | |
3146 | (source | |
3147 | (origin | |
3148 | (method git-fetch) | |
3149 | (uri (git-reference | |
3150 | (url "https://github.com/JuliaTesting/ReferenceTests.jl") | |
3151 | (commit (string-append "v" version)))) | |
3152 | (file-name (git-file-name name version)) | |
3153 | (sha256 | |
3154 | (base32 "0mm6bjhs8a21pippww6b08b5frmnb9m6k8xrszrwq9zhc879zpc9")))) | |
3155 | (build-system julia-build-system) | |
3156 | (arguments | |
3157 | `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl. | |
3158 | (propagated-inputs | |
3159 | `(("julia-deepdiffs" ,julia-deepdiffs) | |
3160 | ("julia-distances" ,julia-distances) | |
3161 | ("julia-fileio" ,julia-fileio) | |
3162 | ("julia-imagecore" ,julia-imagecore) | |
3163 | ("julia-imageinterminal" ,julia-imageinterminal))) | |
3164 | ;(native-inputs | |
3165 | ; `(("julia-csvfiles" ,julia-csvfiles) | |
3166 | ; ("julia-dataframes" ,julia-dataframes) | |
3167 | ; ("julia-gr" ,julia-gr) | |
3168 | ; ("julia-imagemagick" ,julia-imagemagick) | |
3169 | ; ("julia-imagetransformations" ,julia-imagetransformations) | |
3170 | ; ("julia-plots" ,julia-plots) | |
3171 | ; ("julia-testimages" ,julia-testimages))) | |
3172 | (home-page "https://juliatesting.github.io/ReferenceTests.jl/latest/") | |
3173 | (synopsis "Utility package for comparing data against reference files") | |
3174 | (description "@code{ReferenceTests.jl} is a Julia package that adds a couple | |
3175 | of additional macros to your testing toolbox. In particular, it focuses on | |
3176 | functionality for testing values against reference files, which in turn the | |
3177 | package can help create and update if need be.") | |
3178 | (license license:expat))) | |
02543b52 | 3179 | |
658fca53 | 3180 | (define-public julia-requires |
3181 | (package | |
3182 | (name "julia-requires") | |
3183 | (version "1.1.3") | |
3184 | (source | |
3185 | (origin | |
3186 | (method git-fetch) | |
3187 | (uri (git-reference | |
3188 | (url "https://github.com/JuliaPackaging/Requires.jl/") | |
3189 | (commit (string-append "v" version)))) | |
3190 | (file-name (git-file-name name version)) | |
3191 | (sha256 | |
3192 | (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01")))) | |
3193 | (build-system julia-build-system) | |
3194 | (inputs ;required for test | |
3195 | `(("julia-example" ,julia-example))) | |
3196 | (propagated-inputs | |
3197 | `(("julia-colors" ,julia-colors))) | |
3198 | (home-page "https://github.com/JuliaPackaging/Requires.jl/") | |
3199 | (synopsis "Faster package loader") | |
3200 | (description "This package make loading packages faster, maybe. It | |
3201 | supports specifying glue code in packages which will load automatically when | |
3202 | another package is loaded, so that explicit dependencies (and long load times) | |
3203 | can be avoided.") | |
3204 | (license license:expat))) | |
3205 | ||
e9a0f6a4 EF |
3206 | (define-public julia-reversediff |
3207 | (package | |
3208 | (name "julia-reversediff") | |
3209 | (version "1.9.0") | |
3210 | (source | |
3211 | (origin | |
3212 | (method git-fetch) | |
3213 | (uri (git-reference | |
3214 | (url "https://github.com/JuliaDiff/ReverseDiff.jl") | |
3215 | (commit (string-append "v" version)))) | |
3216 | (file-name (git-file-name name version)) | |
3217 | (sha256 | |
3218 | (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl")))) | |
3219 | (build-system julia-build-system) | |
3220 | (propagated-inputs | |
3221 | `(("julia-diffresults" ,julia-diffresults) | |
3222 | ("julia-diffrules" ,julia-diffrules) | |
3223 | ("julia-forwarddiff" ,julia-forwarddiff) | |
3224 | ("julia-functionwrappers" ,julia-functionwrappers) | |
3225 | ("julia-macrotools" ,julia-macrotools) | |
3226 | ("julia-nanmath" ,julia-nanmath) | |
3227 | ("julia-specialfunctions" ,julia-specialfunctions) | |
3228 | ("julia-staticarrays" ,julia-staticarrays))) | |
3229 | (native-inputs | |
3230 | `(("julia-difftests" ,julia-difftests) | |
3231 | ("julia-fillarrays" ,julia-fillarrays))) | |
3232 | (home-page "https://github.com/JuliaDiff/ReverseDiff.jl") | |
3233 | (synopsis "Reverse Mode Automatic Differentiation for Julia") | |
3234 | (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based | |
3235 | reverse mode @acronym{AD, automatic differentiation}, that implements methods to | |
3236 | take gradients, Jacobians, Hessians, and higher-order derivatives of native | |
3237 | Julia functions (or any callable object, really).") | |
3238 | (license license:expat))) | |
3239 | ||
dd7a77c3 | 3240 | (define-public julia-richardson |
3241 | (package | |
3242 | (name "julia-richardson") | |
3243 | (version "1.4.0") | |
3244 | (source | |
3245 | (origin | |
3246 | (method git-fetch) | |
3247 | (uri (git-reference | |
3248 | (url "https://github.com/JuliaMath/Richardson.jl") | |
3249 | (commit (string-append "v" version)))) | |
3250 | (file-name (git-file-name name version)) | |
3251 | (sha256 | |
3252 | (base32 "06v9ii3d7hh41fsrfklaa8ap55z5s017f888mrd1c18y4fx9i4nx")))) | |
3253 | (build-system julia-build-system) | |
3254 | (home-page "https://juliapackages.com/p/richardson") | |
3255 | (synopsis "Extrapolate function using Richardson method") | |
3256 | (description "This package provides a function extrapolate that | |
3257 | extrapolates a given function @code{f(x)} to @code{f(x0)}, evaluating @code{f} | |
3258 | only at a geometric sequence of points @code{> x0} (or optionally @code{< | |
3259 | x0}). The key algorithm is Richardson extrapolation using a Neville–Aitken | |
3260 | tableau, which adaptively increases the degree of an extrapolation polynomial | |
3261 | until convergence is achieved to a desired tolerance (or convergence stalls | |
3262 | due to e.g. floating-point errors). This allows one to obtain @code{f(x0)} to | |
3263 | high-order accuracy, assuming that @code{f(x0+h)} has a Taylor series or some | |
3264 | other power series in @code{h}.") | |
3265 | (license license:expat))) | |
3266 | ||
1fde30c2 EF |
3267 | (define-public julia-rotations |
3268 | (package | |
3269 | (name "julia-rotations") | |
3270 | (version "1.0.2") | |
3271 | (source | |
3272 | (origin | |
3273 | (method git-fetch) | |
3274 | (uri (git-reference | |
3275 | (url "https://github.com/JuliaGeometry/Rotations.jl") | |
3276 | (commit (string-append "v" version)))) | |
3277 | (file-name (git-file-name name version)) | |
3278 | (sha256 | |
3279 | (base32 "1l1a3bnrpv9qdksnk3c8j82ik3yrnpsmnyxyiy3gc1yjya5pajqj")))) | |
3280 | (build-system julia-build-system) | |
3281 | (propagated-inputs | |
3282 | `(("julia-staticarrays" ,julia-staticarrays))) | |
3283 | (native-inputs | |
3284 | `(("julia-benchmarktools" ,julia-benchmarktools) | |
3285 | ("julia-forwarddiff" ,julia-forwarddiff) | |
3286 | ("julia-unitful" ,julia-unitful))) | |
3287 | (home-page "https://github.com/JuliaGeometry/Rotations.jl") | |
3288 | (synopsis "Julia implementations for different rotation parameterisations") | |
3289 | (description "This package implements various 3D rotation parameterizations | |
3290 | and defines conversions between them. At their heart, each rotation | |
3291 | parameterization is a 3×3 unitary (orthogonal) matrix (based on the | |
3292 | @code{StaticArrays.jl} package), and acts to rotate a 3-vector about the origin | |
3293 | through matrix-vector multiplication.") | |
3294 | (license license:expat))) | |
3295 | ||
9f3dae8f EF |
3296 | (define-public julia-safetestsets |
3297 | ;; The only release tag is the first commit in the repository. | |
3298 | (let ((commit "e553edc4c753344d38349304b9ff5483c3b8ff21") | |
3299 | (revision "1")) | |
3300 | (package | |
3301 | (name "julia-safetestsets") | |
3302 | (version (git-version "0.0.1" revision commit)) | |
3303 | (source | |
3304 | (origin | |
3305 | (method git-fetch) | |
3306 | (uri (git-reference | |
3307 | (url "https://github.com/YingboMa/SafeTestsets.jl") | |
3308 | (commit commit))) | |
3309 | (file-name (git-file-name name version)) | |
3310 | (sha256 | |
3311 | (base32 "1fb1dfdmiw2ggx60hf70954xlps0r48fcb3k3dvxynlz7ylphp96")))) | |
3312 | (build-system julia-build-system) | |
3313 | (arguments | |
3314 | `(#:julia-package-name "SafeTestsets")) | |
3315 | (native-inputs | |
3316 | `(("julia-staticarrays" ,julia-staticarrays))) | |
3317 | (home-page "https://github.com/YingboMa/SafeTestsets.jl") | |
3318 | (synopsis "Julia's testset in a module") | |
3319 | (description "This package contains the testset from Julia, packaged into | |
3320 | a loadable module.") | |
3321 | (license license:expat)))) | |
3322 | ||
014421ee EF |
3323 | (define-public julia-scratch |
3324 | (package | |
3325 | (name "julia-scratch") | |
48bb6199 | 3326 | (version "1.1.0") |
014421ee EF |
3327 | (source |
3328 | (origin | |
3329 | (method git-fetch) | |
3330 | (uri (git-reference | |
3331 | (url "https://github.com/JuliaPackaging/Scratch.jl") | |
3332 | (commit (string-append "v" version)))) | |
3333 | (file-name (git-file-name name version)) | |
3334 | (sha256 | |
3335 | (base32 | |
48bb6199 | 3336 | "09xni9rrrax17fxjz04j1b48mk9ffww5rcbagh66jklr89mrkqhx")))) |
014421ee EF |
3337 | (build-system julia-build-system) |
3338 | (arguments | |
3339 | `(#:tests? #f)) ; Test suite tries to access the Julia package registry. | |
3340 | (home-page "https://github.com/JuliaPackaging/Scratch.jl") | |
3341 | (synopsis "Scratch spaces for all your persistent mutable data needs") | |
3342 | (description "This repository implements the scratch spaces API for | |
3343 | package-specific mutable containers of data. These spaces can contain datasets, | |
3344 | text, binaries, or any other kind of data that would be convenient to store in | |
3345 | a location specific to your package. As compared to Artifacts, these containers | |
3346 | of data are mutable. Because the scratch space location on disk is not very | |
3347 | user-friendly, scratch spaces should, in general, not be used for a storing | |
3348 | files that the user must interact with through a file browser.") | |
3349 | (license license:expat))) | |
3350 | ||
1ba8c88f EF |
3351 | (define-public julia-showoff |
3352 | (package | |
3353 | (name "julia-showoff") | |
3354 | (version "1.0.2") | |
3355 | (source | |
3356 | (origin | |
3357 | (method git-fetch) | |
3358 | (uri (git-reference | |
3359 | (url "https://github.com/JuliaGraphics/Showoff.jl") | |
3360 | (commit (string-append "v" version)))) | |
3361 | (file-name (git-file-name name version)) | |
3362 | (sha256 | |
3363 | (base32 "1g4hqvjjpwbrs7fnllyl5w66yj6qlvpvzpygym2nvf01m1ps6m53")))) | |
3364 | (build-system julia-build-system) | |
3365 | (home-page "https://github.com/JuliaGraphics/Showoff.jl") | |
3366 | (synopsis "Nicely format an array of n things for tables and plots") | |
3367 | (description "@code{Showoff} provides an interface for consistently | |
3368 | formatting an array of n things, e.g. numbers, dates, unitful values. It's used | |
3369 | in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.") | |
3370 | (license license:expat))) | |
3371 | ||
63a83375 EF |
3372 | (define-public julia-simpletraits |
3373 | (package | |
3374 | (name "julia-simpletraits") | |
3375 | (version "0.9.3") | |
3376 | (source | |
3377 | (origin | |
3378 | (method git-fetch) | |
3379 | (uri (git-reference | |
3380 | (url "https://github.com/mauro3/SimpleTraits.jl") | |
3381 | (commit (string-append "v" version)))) | |
3382 | (file-name (git-file-name name version)) | |
3383 | (sha256 | |
3384 | (base32 "1aaq91klwxb0r3ckwihf7rd7jvg70757nkhp5ip4cc3lspnnip23")))) | |
3385 | (build-system julia-build-system) | |
3386 | (propagated-inputs | |
3387 | `(("julia-macrotools" ,julia-macrotools))) | |
3388 | (home-page "https://github.com/mauro3/SimpleTraits.jl") | |
3389 | (synopsis "Simple Traits for Julia") | |
3390 | (description "This package provides a macro-based implementation of traits. | |
3391 | The main idea behind traits is to group types outside the type-hierarchy and to | |
3392 | make dispatch work with that grouping. The difference to Union-types is that | |
3393 | types can be added to a trait after the creation of the trait, whereas Union | |
3394 | types are fixed after creation.") | |
3395 | (license license:expat))) | |
3396 | ||
c0f5dd63 EF |
3397 | (define-public julia-sortingalgorithms |
3398 | (package | |
3399 | (name "julia-sortingalgorithms") | |
3400 | (version "1.0.0") | |
3401 | (source | |
3402 | (origin | |
3403 | (method git-fetch) | |
3404 | (uri (git-reference | |
3405 | (url "https://github.com/JuliaCollections/SortingAlgorithms.jl") | |
3406 | ;; Tagging releases is hard: | |
3407 | ;; https://github.com/JuliaCollections/SortingAlgorithms.jl/issues/41#issuecomment-840587380 | |
3408 | (commit "aa2b98d384ddd132aae0219e68fb63b92513cb35"))) | |
3409 | (file-name (git-file-name name version)) | |
3410 | (sha256 | |
3411 | (base32 "13zbx18psxrg4fvkqgp0m7g484vrama2xm6902bbls30801hgljg")))) | |
3412 | (build-system julia-build-system) | |
3413 | (arguments | |
3414 | `(#:tests? #f)) ; cycle with StatsBase.jl | |
3415 | (propagated-inputs | |
3416 | `(("julia-datastructures" ,julia-datastructures))) | |
3417 | ;(native-inputs | |
3418 | ; `(("julia-statsbase" ,julia-statsbase))) | |
3419 | (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl") | |
3420 | (synopsis "Extra sorting algorithms extending Julia's sorting API") | |
3421 | (description "The SortingAlgorithms package provides three sorting | |
3422 | algorithms that can be used with Julia's standard sorting API: heapsort, | |
3423 | timsort and radixsort.") | |
3424 | (license license:expat))) | |
3425 | ||
3d98a16a | 3426 | (define-public julia-specialfunctions |
3427 | (package | |
3428 | (name "julia-specialfunctions") | |
3429 | (version "1.3.0") | |
3430 | (source | |
3431 | (origin | |
3432 | (method git-fetch) | |
3433 | (uri (git-reference | |
3434 | (url "https://github.com/JuliaMath/SpecialFunctions.jl") | |
3435 | (commit (string-append "v" version)))) | |
3436 | (file-name (git-file-name name version)) | |
3437 | (sha256 | |
3438 | (base32 "1rfhrrkzi3ils7fklbn35ki1yp5x88fi71qknfwqyw4pk8cf8p80")))) | |
3439 | (build-system julia-build-system) | |
3440 | (inputs | |
3441 | `(("julia-chainrulestestutils" ,julia-chainrulestestutils))) | |
3442 | (propagated-inputs | |
3443 | `(("julia-chainrulescore" ,julia-chainrulescore) | |
3444 | ("julia-openspecfun-jll" ,julia-openspecfun-jll))) | |
3445 | (home-page "https://github.com/JuliaMath/SpecialFunctions.jl") | |
3446 | (synopsis "Special mathematical functions") | |
3447 | (description "This package provides special mathematical functions, | |
3448 | including Bessel, Hankel, Airy, error, Dawson, exponential (or sine and | |
3449 | cosine) integrals, eta, zeta, digamma, inverse digamma, trigamma, and | |
3450 | polygamma functions.") | |
8f856c80 EF |
3451 | (license license:expat))) |
3452 | ||
3453 | (define-public julia-splitapplycombine | |
3454 | (package | |
3455 | (name "julia-splitapplycombine") | |
3456 | (version "1.1.4") | |
3457 | (source | |
3458 | (origin | |
3459 | (method git-fetch) | |
3460 | (uri (git-reference | |
3461 | (url "https://github.com/JuliaData/SplitApplyCombine.jl") | |
3462 | (commit (string-append "v" version)))) | |
3463 | (file-name (git-file-name name version)) | |
3464 | (sha256 | |
3465 | (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x")))) | |
3466 | (build-system julia-build-system) | |
3467 | (propagated-inputs | |
3468 | `(("julia-dictionaries" ,julia-dictionaries) | |
3469 | ("julia-indexing" ,julia-indexing))) | |
3470 | (home-page "https://github.com/JuliaData/SplitApplyCombine.jl") | |
3471 | (synopsis "Split-apply-combine strategies for Julia") | |
3472 | (description "@code{SplitApplyCombine.jl} provides high-level, generic tools | |
3473 | for manipulating data - particularly focussing on data in nested containers. An | |
3474 | emphasis is placed on ensuring split-apply-combine strategies are easy to apply, | |
3475 | and work reliably for arbitrary iterables and in an optimized way with the data | |
3476 | structures included in Julia's standard library.") | |
3d98a16a | 3477 | (license license:expat))) |
3478 | ||
47f67c56 EF |
3479 | (define-public julia-stablerngs |
3480 | (package | |
3481 | (name "julia-stablerngs") | |
3482 | (version "1.0.0") | |
3483 | (source | |
3484 | (origin | |
3485 | (method git-fetch) | |
3486 | (uri (git-reference | |
3487 | (url "https://github.com/JuliaRandom/StableRNGs.jl") | |
3488 | (commit (string-append "v" version)))) | |
3489 | (file-name (git-file-name name version)) | |
3490 | (sha256 | |
3491 | (base32 "1cw4wc38qbgmrrx0jjwjhynnarrzjkh0yyz242zj272brbci7p1r")))) | |
3492 | (build-system julia-build-system) | |
3493 | (home-page "https://github.com/JuliaRandom/StableRNGs.jl") | |
3494 | (synopsis "Julia RNG with stable streams") | |
3495 | (description "This package intends to provide a simple RNG with stable | |
3496 | streams, suitable for tests in packages which need reproducible streams of | |
3497 | random numbers across Julia versions. Indeed, the Julia RNGs provided by | |
3498 | default are documented to have non-stable streams (which for example enables | |
3499 | some performance improvements).") | |
3500 | (license license:expat))) | |
3501 | ||
e490262f EF |
3502 | (define-public julia-stackviews |
3503 | (package | |
3504 | (name "julia-stackviews") | |
3505 | (version "0.1.1") | |
3506 | (source | |
3507 | (origin | |
3508 | (method git-fetch) | |
3509 | (uri (git-reference | |
3510 | (url "https://github.com/JuliaArrays/StackViews.jl") | |
3511 | (commit (string-append "v" version)))) | |
3512 | (file-name (git-file-name name version)) | |
3513 | (sha256 | |
3514 | (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7")))) | |
3515 | (build-system julia-build-system) | |
3516 | (arguments | |
3517 | `(#:tests? #f ; Documenter.jl not packaged yet | |
3518 | #:phases | |
3519 | (modify-phases %standard-phases | |
3520 | (add-after 'unpack 'skip-doctest | |
3521 | (lambda _ | |
3522 | (substitute* "test/runtests.jl" | |
3523 | ((".*doctest.*") "")) | |
3524 | #t))))) | |
3525 | (propagated-inputs | |
3526 | `(("julia-offsetarrays" ,julia-offsetarrays))) | |
3527 | ;(native-inputs | |
3528 | ; `(("julia-aqua" ,julia-aqua) | |
3529 | ; ("julia-documenter" ,julia-documenter))) | |
3530 | (home-page "https://github.com/JuliaArrays/StackViews.jl") | |
3531 | (synopsis "No more catcat") | |
3532 | (description "StackViews provides only one array type: @code{StackView}. | |
3533 | There are multiple ways to understand @code{StackView}: | |
3534 | @itemize | |
3535 | @item inverse of @code{eachslice} | |
3536 | @item @code{cat} variant | |
3537 | @item view object | |
3538 | @item lazy version of @code{repeat} special case | |
3539 | @end itemize") | |
3540 | (license license:expat))) | |
3541 | ||
6496b31a EF |
3542 | (define-public julia-static |
3543 | (package | |
3544 | (name "julia-static") | |
ad2a86b0 | 3545 | (version "0.2.5") |
6496b31a EF |
3546 | (source |
3547 | (origin | |
3548 | (method git-fetch) | |
3549 | (uri (git-reference | |
3550 | (url "https://github.com/SciML/Static.jl") | |
3551 | (commit (string-append "v" version)))) | |
3552 | (file-name (git-file-name name version)) | |
3553 | (sha256 | |
ad2a86b0 | 3554 | (base32 "1sxfp169c7caaklpp7mz8770ayk9w8xw133m95kf7v11sya1lb7v")))) |
6496b31a EF |
3555 | (build-system julia-build-system) |
3556 | (propagated-inputs | |
3557 | `(("julia-ifelse" ,julia-ifelse))) | |
3558 | (native-inputs | |
3559 | `(("julia-aqua" ,julia-aqua))) | |
3560 | (home-page "https://github.com/SciML/Static.jl") | |
3561 | (synopsis "Static types useful for dispatch and generated functions") | |
3562 | (description "Static.jl defines a limited set of statically parameterized | |
3563 | types and a common interface that is shared between them.") | |
3564 | (license license:expat))) | |
3565 | ||
be802277 | 3566 | (define-public julia-staticarrays |
3567 | (package | |
3568 | (name "julia-staticarrays") | |
a981aee3 | 3569 | (version "1.2.0") |
be802277 | 3570 | (source |
3571 | (origin | |
3572 | (method git-fetch) | |
3573 | (uri (git-reference | |
3574 | (url "https://github.com/JuliaArrays/StaticArrays.jl") | |
3575 | (commit (string-append "v" version)))) | |
3576 | (file-name (git-file-name name version)) | |
3577 | (sha256 | |
a981aee3 | 3578 | (base32 "0z4g1kk6gy514dyafb559gcp4264ffx6h28ffczdvkyk8gm9j0m7")))) |
be802277 | 3579 | (build-system julia-build-system) |
3580 | (inputs | |
3581 | `(("julia-benchmarktools" ,julia-benchmarktools))) | |
3582 | (home-page "https://github.com/JuliaArrays/StaticArrays.jl") | |
3583 | (synopsis "Statically sized arrays") | |
3584 | (description "This package provides a framework for implementing | |
3585 | statically sized arrays in Julia, using the abstract type | |
3586 | @code{StaticArray{Size,T,N} <: AbstractArray{T,N}}. Subtypes of | |
3587 | @code{StaticArray} will provide fast implementations of common array and | |
3588 | linear algebra operations.") | |
3589 | (license license:expat))) | |
3590 | ||
f7f1efea EF |
3591 | (define-public julia-statsapi |
3592 | (package | |
3593 | (name "julia-statsapi") | |
3594 | (version "1.0.0") | |
3595 | (source | |
3596 | (origin | |
3597 | (method git-fetch) | |
3598 | (uri (git-reference | |
3599 | (url "https://github.com/JuliaStats/StatsAPI.jl") | |
3600 | (commit (string-append "v" version)))) | |
3601 | (file-name (git-file-name name version)) | |
3602 | (sha256 | |
3603 | (base32 "1k1c3s7i5wzkz4r9fyy4gd7wb97p0qgbc7bmaajm16zqipfmy2bv")))) | |
3604 | (build-system julia-build-system) | |
3605 | (home-page "https://juliastats.org/") | |
3606 | (synopsis "Statistics-focused namespace for packages to share functions") | |
3607 | (description "This package provides a namespace for data-related generic | |
3608 | function definitions to solve the optional dependency problem; packages wishing | |
3609 | to share and/or extend functions can avoid depending directly on each other by | |
3610 | moving the function definition to @code{StatsAPI.jl} and each package taking a | |
3611 | dependency on it.") | |
3612 | (license license:expat))) | |
3613 | ||
2e317bbf EF |
3614 | (define-public julia-statsbase |
3615 | (package | |
3616 | (name "julia-statsbase") | |
3617 | (version "0.33.8") | |
3618 | (source | |
3619 | (origin | |
3620 | (method git-fetch) | |
3621 | (uri (git-reference | |
3622 | (url "https://github.com/JuliaStats/StatsBase.jl") | |
3623 | (commit (string-append "v" version)))) | |
3624 | (file-name (git-file-name name version)) | |
3625 | (sha256 | |
3626 | (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi")))) | |
3627 | (build-system julia-build-system) | |
3628 | (propagated-inputs | |
3629 | `(("julia-dataapi" ,julia-dataapi) | |
3630 | ("julia-datastructures" ,julia-datastructures) | |
3631 | ("julia-missings" ,julia-missings) | |
3632 | ("julia-sortingalgorithms" ,julia-sortingalgorithms) | |
3633 | ("julia-statsapi" ,julia-statsapi))) | |
3634 | (native-inputs | |
3635 | `(("julia-stablerngs" ,julia-stablerngs))) | |
3636 | (home-page "https://github.com/JuliaStats/StatsBase.jl") | |
3637 | (synopsis "Basic statistics for Julia") | |
3638 | (description "StatsBase.jl is a Julia package that provides basic support | |
3639 | for statistics. Particularly, it implements a variety of statistics-related | |
3640 | functions, such as scalar statistics, high-order moment computation, counting, | |
3641 | ranking, covariances, sampling, and empirical density estimation.") | |
3642 | (license license:expat))) | |
3643 | ||
50255943 EF |
3644 | (define-public julia-stringdistances |
3645 | (package | |
3646 | (name "julia-stringdistances") | |
3647 | (version "0.10.0") | |
3648 | (source | |
3649 | (origin | |
3650 | (method git-fetch) | |
3651 | (uri (git-reference | |
3652 | (url "https://github.com/matthieugomez/StringDistances.jl") | |
3653 | (commit (string-append "v" version)))) | |
3654 | (file-name (git-file-name name version)) | |
3655 | (sha256 | |
3656 | (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7")))) | |
3657 | (build-system julia-build-system) | |
3658 | (propagated-inputs | |
3659 | `(("julia-distances" ,julia-distances))) | |
3660 | (home-page "https://github.com/matthieugomez/StringDistances.jl") | |
3661 | (synopsis "String Distances in Julia") | |
3662 | (description "This package provides string distances in Julia. Distances | |
3663 | are defined for @code{AbstractStrings}, and any iterator that define | |
3664 | @code{length()}. The package also defines Distance \"modifiers\" that can be | |
3665 | applied to any distance.") | |
3666 | (license license:expat))) | |
3667 | ||
adb3d879 EF |
3668 | (define-public julia-structtypes |
3669 | (package | |
3670 | (name "julia-structtypes") | |
3671 | (version "1.7.2") | |
3672 | (source | |
3673 | (origin | |
3674 | (method git-fetch) | |
3675 | (uri (git-reference | |
3676 | (url "https://github.com/JuliaData/StructTypes.jl") | |
3677 | (commit (string-append "v" version)))) | |
3678 | (file-name (git-file-name name version)) | |
3679 | (sha256 | |
3680 | (base32 "02mn4kkhn3927dk7945c9bjwlldihydxgn5ilmqqvs8dknvbw8p1")))) | |
3681 | (build-system julia-build-system) | |
3682 | (home-page "https://juliadata.github.io/StructTypes.jl/stable/") | |
3683 | (synopsis "Abstract definitions and convenience methods for Julia objects") | |
3684 | (description "This package provides the @code{StructTypes.StructType} trait | |
3685 | for Julia types to declare the kind of \"struct\" they are, providing | |
3686 | serialization/deserialization packages patterns and strategies to automatically | |
3687 | construct objects.") | |
3688 | (license license:expat))) | |
3689 | ||
ef9a5521 EF |
3690 | (define-public julia-suppressor |
3691 | (package | |
3692 | (name "julia-suppressor") | |
3693 | (version "0.2.0") | |
3694 | (source | |
3695 | (origin | |
3696 | (method git-fetch) | |
3697 | (uri (git-reference | |
3698 | (url "https://github.com/JuliaIO/Suppressor.jl") | |
3699 | (commit (string-append "v" version)))) | |
3700 | (file-name (git-file-name name version)) | |
3701 | (sha256 | |
3702 | (base32 "0v6pxvf8lzrqjc676snvlszh14ridl442g2h6syfjiy75pk7mdyc")))) | |
3703 | (build-system julia-build-system) | |
3704 | (home-page "https://github.com/JuliaIO/Suppressor.jl") | |
3705 | (synopsis "Capture stdout and sterr") | |
3706 | (description "Julia macros for suppressing and/or capturing output (stdout), | |
3707 | warnings (stderr) or both streams at the same time.") | |
3708 | (license license:expat))) | |
3709 | ||
40a7da2b EF |
3710 | (define-public julia-tableiointerface |
3711 | (package | |
3712 | (name "julia-tableiointerface") | |
3713 | (version "0.1.6") | |
3714 | (source | |
3715 | (origin | |
3716 | (method git-fetch) | |
3717 | (uri (git-reference | |
3718 | (url "https://github.com/lungben/TableIOInterface.jl") | |
3719 | (commit (string-append "v" version)))) | |
3720 | (file-name (git-file-name name version)) | |
3721 | (sha256 | |
3722 | (base32 "0p2fi9jbyfg2j6rysv4if7dx8qw2mssb04i75j1zq607j8707kvn")))) | |
3723 | (build-system julia-build-system) | |
3724 | (home-page "https://github.com/lungben/TableIOInterface.jl") | |
3725 | (synopsis "File formats based on file extensions") | |
3726 | (description "This package determines tabular file formats based on file | |
3727 | extensions. It is intended to be the base both for @code{TableIO.jl} and for | |
3728 | the @code{Pluto.jl} tabular data import functionality.") | |
3729 | (license license:expat))) | |
3730 | ||
2bd2406c EF |
3731 | (define-public julia-tables |
3732 | (package | |
3733 | (name "julia-tables") | |
3734 | (version "1.4.3") | |
3735 | (source | |
3736 | (origin | |
3737 | (method git-fetch) | |
3738 | (uri (git-reference | |
3739 | (url "https://github.com/JuliaData/Tables.jl") | |
3740 | (commit (string-append "v" version)))) | |
3741 | (file-name (git-file-name name version)) | |
3742 | (sha256 | |
3743 | (base32 "0yfjl4v1vglsk9wr7gbqgya4kk3a0q0i6zhi9xdgvnqsqzqrsc7c")))) | |
3744 | (build-system julia-build-system) | |
3745 | (propagated-inputs | |
3746 | `(("julia-dataapi" ,julia-dataapi) | |
3747 | ("julia-datavalueinterfaces" ,julia-datavalueinterfaces) | |
3748 | ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) | |
3749 | ("julia-tabletraits" ,julia-tabletraits))) | |
3750 | (native-inputs | |
3751 | `(("julia-datavalues" ,julia-datavalues) | |
3752 | ("julia-queryoperators" ,julia-queryoperators))) | |
3753 | (home-page "https://github.com/JuliaData/Tables.jl") | |
3754 | (synopsis "Interface for tables in Julia") | |
3755 | (description "The @code{Tables.jl} package provides simple, yet powerful | |
3756 | interface functions for working with all kinds tabular data.") | |
3757 | (license license:expat))) | |
3758 | ||
a61e13f7 EF |
3759 | (define-public julia-tableshowutils |
3760 | ;; The 0.2.5 release is not fully compatable with newer versions of Julia. | |
3761 | (let ((commit "c4e02d8b9bbb31fc81ed6618955e9b1c7cb04460") | |
3762 | (revision "1")) | |
3763 | (package | |
3764 | (name "julia-tableshowutils") | |
3765 | (version "0.2.5") | |
3766 | (source | |
3767 | (origin | |
3768 | (method git-fetch) | |
3769 | (uri (git-reference | |
3770 | (url "https://github.com/queryverse/TableShowUtils.jl") | |
3771 | (commit commit))) | |
3772 | (file-name (git-file-name name version)) | |
3773 | (sha256 | |
3774 | (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5")))) | |
3775 | (build-system julia-build-system) | |
3776 | (propagated-inputs | |
3777 | `(("julia-datavalues" ,julia-datavalues) | |
3778 | ("julia-json" ,julia-json))) | |
3779 | (home-page "https://github.com/queryverse/TableShowUtils.jl") | |
3780 | (synopsis "Implement show for TableTraits.jl types") | |
3781 | (description "This package provides some common helper functions that make | |
3782 | it easier to implement various @code{Base.show} functions for types that | |
3783 | participate in the @code{TableTraits.jl} ecosystem.") | |
3784 | (license license:expat)))) | |
3785 | ||
3f40ba72 EF |
3786 | (define-public julia-tabletraits |
3787 | (package | |
3788 | (name "julia-tabletraits") | |
3789 | (version "1.0.1") | |
3790 | (source | |
3791 | (origin | |
3792 | (method git-fetch) | |
3793 | (uri (git-reference | |
3794 | (url "https://github.com/queryverse/TableTraits.jl") | |
3795 | (commit (string-append "v" version)))) | |
3796 | (file-name (git-file-name name version)) | |
3797 | (sha256 | |
3798 | (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4")))) | |
3799 | (build-system julia-build-system) | |
3800 | (propagated-inputs | |
3801 | `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions))) | |
3802 | (home-page "https://github.com/queryverse/TableTraits.jl") | |
3803 | (synopsis "Traits for Julia tables") | |
3804 | (description "TableTraits defines a generic interface for tabular data.") | |
3805 | (license license:expat))) | |
3806 | ||
6a2d36c7 EF |
3807 | (define-public julia-tensorcore |
3808 | (package | |
3809 | (name "julia-tensorcore") | |
3810 | (version "0.1.1") | |
3811 | (source | |
3812 | (origin | |
3813 | (method git-fetch) | |
3814 | (uri (git-reference | |
3815 | (url "https://github.com/JuliaMath/TensorCore.jl") | |
3816 | (commit (string-append "v" version)))) | |
3817 | (file-name (git-file-name name version)) | |
3818 | (sha256 | |
3819 | (base32 "1sy3in4a1rl3l2vk0cm9mzg2nkva7syhr7i35si0kbzhkdwpbqjy")))) | |
3820 | (build-system julia-build-system) | |
3821 | (home-page "https://github.com/JuliaMath/TensorCore.jl") | |
3822 | (synopsis "Tensor-algebra definitions") | |
3823 | (description "This package is intended as a lightweight foundation for | |
3824 | tensor operations across the Julia ecosystem. Currently it exports three | |
3825 | operations: @acronym{hadamard, elementwise multiplication}, @acronym{tensor, | |
3826 | product preserves all dimensions}, and @acronym{boxdot, contracts neighboring | |
3827 | dimensions}.") | |
3828 | (license license:expat))) | |
3829 | ||
6ddeadba EF |
3830 | (define-public julia-testimages |
3831 | (package | |
3832 | (name "julia-testimages") | |
3833 | (version "1.5.0") | |
3834 | (source | |
3835 | (origin | |
3836 | (method git-fetch) | |
3837 | (uri (git-reference | |
3838 | (url "https://github.com/JuliaImages/TestImages.jl") | |
3839 | (commit (string-append "v" version)))) | |
3840 | (file-name (git-file-name name version)) | |
3841 | (sha256 | |
3842 | (base32 "1lnfsmx33qspyvxw0cykwh7il8xykjpcw1080sisn95ngz2qhdmy")))) | |
3843 | (build-system julia-build-system) | |
3844 | (arguments | |
3845 | `(#:tests? #f)) ; cycle with ImageMagick.jl | |
3846 | (propagated-inputs | |
3847 | `(("julia-axisarrays" ,julia-axisarrays) | |
3848 | ("julia-colortypes" ,julia-colortypes) | |
3849 | ("julia-fileio" ,julia-fileio) | |
3850 | ("julia-offsetarrays" ,julia-offsetarrays) | |
3851 | ("julia-stringdistances" ,julia-stringdistances))) | |
3852 | ;(native-inputs | |
3853 | ; `(("julia-colors" ,julia-colors) | |
3854 | ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) | |
3855 | ; ("julia-imagecontrastadjustment" ,julia-imagecontrastadjustment) | |
3856 | ; ("julia-imagemagick" ,julia-imagemagick) | |
3857 | ; ("julia-ometiff" ,julia-ometiff) | |
3858 | ; ("julia-referencetests" ,julia-referencetests))) | |
3859 | (home-page "https://testimages.juliaimages.org/") | |
3860 | (synopsis "Standard test images for Julia") | |
3861 | (description "This package provides a convenient Julia interface for loading | |
3862 | standard named test images and example images for the internal usage in | |
3863 | @code{JuliaImages}. This can be used in conjunction with the @code{Images} | |
3864 | package.") | |
3865 | (license license:expat))) | |
3866 | ||
916c2669 EF |
3867 | (define-public julia-tracker |
3868 | (package | |
3869 | (name "julia-tracker") | |
3870 | (version "0.2.12") | |
3871 | (source | |
3872 | (origin | |
3873 | (method git-fetch) | |
3874 | (uri (git-reference | |
3875 | (url "https://github.com/FluxML/Tracker.jl") | |
3876 | (commit (string-append "v" version)))) | |
3877 | (file-name (git-file-name name version)) | |
3878 | (sha256 | |
3879 | (base32 "1s4mdywbp7nli7z985fqaj1rs4i6d92b1jx3lhg0qhk1s5wc0v8j")))) | |
3880 | (build-system julia-build-system) | |
3881 | (propagated-inputs | |
3882 | `(("julia-adapt" ,julia-adapt) | |
3883 | ("julia-diffrules" ,julia-diffrules) | |
3884 | ("julia-forwarddiff" ,julia-forwarddiff) | |
3885 | ("julia-macrotools" ,julia-macrotools) | |
3886 | ("julia-nanmath" ,julia-nanmath) | |
3887 | ("julia-nnlib" ,julia-nnlib) | |
3888 | ("julia-requires" ,julia-requires) | |
3889 | ("julia-specialfunctions" ,julia-specialfunctions))) | |
3890 | (native-inputs | |
3891 | `(("julia-pdmats" ,julia-pdmats))) | |
3892 | (home-page "https://github.com/FluxML/Tracker.jl") | |
3893 | (synopsis "Operator overloading reverse-mode automatic differentiator") | |
3894 | (description "@code{Tracker.jl} previously provided @code{Flux.jl} with | |
3895 | automatic differentiation for its machine learning platform.") | |
3896 | (license license:expat))) | |
3897 | ||
adedfd07 EF |
3898 | (define-public julia-typedtables |
3899 | (package | |
3900 | (name "julia-typedtables") | |
3901 | (version "1.2.4") | |
3902 | (source | |
3903 | (origin | |
3904 | (method git-fetch) | |
3905 | (uri (git-reference | |
3906 | (url "https://github.com/JuliaData/TypedTables.jl") | |
3907 | (commit (string-append "v" version)))) | |
3908 | (file-name (git-file-name name version)) | |
3909 | (sha256 | |
3910 | (base32 "06k5h7ybsh29b6kiy0p62rp9b2q3xi9jk8p9wf0kq907p5kvfnfy")))) | |
3911 | (build-system julia-build-system) | |
3912 | (propagated-inputs | |
3913 | `(("julia-adapt" ,julia-adapt) | |
3914 | ("julia-splitapplycombine" ,julia-splitapplycombine) | |
3915 | ("julia-tables" ,julia-tables))) | |
3916 | (home-page "https://github.com/JuliaData/TypedTables.jl") | |
3917 | (synopsis "Column-based storage for data analysis in Julia") | |
3918 | (description "@code{TypedTables.jl} provides two column-based storage | |
3919 | containers: @code{Table} and @code{FlexTable}, both of which represent an array | |
3920 | of @code{NamedTuples}. This package is designed to be lightweight, easy-to-use | |
3921 | and fast, and presents a very minimal new interface to learn.") | |
3922 | (license license:expat))) | |
3923 | ||
c1f7692f EF |
3924 | (define-public julia-unpack |
3925 | (package | |
3926 | (name "julia-unpack") | |
3927 | (version "1.0.2") | |
3928 | (source | |
3929 | (origin | |
3930 | (method git-fetch) | |
3931 | (uri (git-reference | |
3932 | (url "https://github.com/mauro3/UnPack.jl") | |
3933 | (commit (string-append "v" version)))) | |
3934 | (file-name (git-file-name name version)) | |
3935 | (sha256 | |
3936 | (base32 "066v1px72zidnvhl0rczhh07rcfwvli0jx5nprrgyi1dvj3mps2a")))) | |
3937 | (build-system julia-build-system) | |
3938 | (home-page "https://github.com/mauro3/UnPack.jl") | |
3939 | (synopsis "Pack and Unpack macros for Julia") | |
3940 | (description "The @code{@@unpack} and @code{@@pack!} macros work to unpack | |
3941 | types, modules, and dictionaries.") | |
3942 | (license license:expat))) | |
3943 | ||
8f59a9fb | 3944 | (define-public julia-uris |
3945 | (package | |
3946 | (name "julia-uris") | |
8af35997 | 3947 | (version "1.3.0") |
8f59a9fb | 3948 | (source |
3949 | (origin | |
3950 | (method git-fetch) | |
3951 | (uri (git-reference | |
3952 | (url "https://github.com/JuliaWeb/URIs.jl") | |
3953 | (commit (string-append "v" version)))) | |
3954 | (file-name (git-file-name name version)) | |
3955 | (sha256 | |
8af35997 | 3956 | (base32 "0kp4hg3kknkm2smlcizqfd33l9x4vkahc2714gnbjp39fj285b92")))) |
8f59a9fb | 3957 | (build-system julia-build-system) |
3958 | (arguments | |
3959 | '(#:julia-package-name "URIs" ;required to run tests | |
3960 | #:phases | |
3961 | (modify-phases %standard-phases | |
3962 | (add-before 'check 'change-dir | |
3963 | ;; Tests must be run from the testdir | |
3964 | (lambda* (#:key source outputs #:allow-other-keys) | |
3965 | (let ((out (assoc-ref outputs "out"))) | |
3966 | (chdir | |
3967 | (string-append out "/share/julia/packages/URIs/test"))) | |
3968 | #t))))) | |
3969 | ;; required for tests | |
3970 | (inputs `(("julia-json" ,julia-json))) | |
3971 | (home-page "https://github.com/JuliaWeb/URIs.jl") | |
3972 | (synopsis "URI parsing in Julia") | |
3973 | (description "@code{URIs.jl} is a Julia package that allows parsing and | |
3974 | working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC | |
3975 | 3986.") | |
3976 | (license license:expat))) | |
a8e3be6a | 3977 | |
3978 | (define-public julia-unitful | |
3979 | (package | |
3980 | (name "julia-unitful") | |
996f4b93 | 3981 | (version "1.8.0") |
a8e3be6a | 3982 | (source |
3983 | (origin | |
3984 | (method git-fetch) | |
3985 | (uri (git-reference | |
3986 | (url "https://github.com/PainterQubits/Unitful.jl") | |
3987 | (commit (string-append "v" version)))) | |
3988 | (file-name (git-file-name name version)) | |
3989 | (sha256 | |
996f4b93 | 3990 | (base32 "0n9z4skj04h033qbn22cn6f5jby6584j6pizvs7bdbk93h39ch1g")))) |
a8e3be6a | 3991 | (build-system julia-build-system) |
3992 | (propagated-inputs | |
3993 | `(("julia-constructionbase" ,julia-constructionbase))) | |
3994 | (home-page "https://painterqubits.github.io/Unitful.jl/stable/") | |
3995 | (synopsis "Physical units in Julia") | |
3996 | (description "This package supports SI units and also many other unit | |
3997 | system.") | |
3998 | (license license:expat))) | |
568cebc2 | 3999 | |
34ab622d EF |
4000 | (define-public julia-versionparsing |
4001 | (package | |
4002 | (name "julia-versionparsing") | |
4003 | (version "1.2.0") | |
4004 | (source | |
4005 | (origin | |
4006 | (method git-fetch) | |
4007 | (uri (git-reference | |
4008 | (url "https://github.com/JuliaInterop/VersionParsing.jl") | |
4009 | (commit (string-append "v" version)))) | |
4010 | (file-name (git-file-name name version)) | |
4011 | (sha256 | |
4012 | (base32 "060s72dsnpavgilf7f7315lw2sn4npk8lkndmj6bg7i23hppiwva")))) | |
4013 | (build-system julia-build-system) | |
4014 | (home-page "https://github.com/JuliaInterop/VersionParsing.jl") | |
4015 | (synopsis "Flexible VersionNumber parsing in Julia") | |
4016 | (description "The @code{VersionParsing} package implements flexible parsing | |
4017 | of version-number strings into Julia's built-in @code{VersionNumber} type, via | |
4018 | the @code{vparse(string)} function. Unlike the @code{VersionNumber(string)} | |
4019 | constructor, @code{vparse(string)} can handle version-number strings in a much | |
4020 | wider range of formats than are encompassed by the semver standard. This is | |
4021 | useful in order to support @code{VersionNumber} comparisons applied to | |
4022 | \"foreign\" version numbers from external packages.") | |
4023 | (license license:expat))) | |
4024 | ||
f34f8a3d EF |
4025 | (define-public julia-weakrefstrings |
4026 | (package | |
4027 | (name "julia-weakrefstrings") | |
51ef08e5 | 4028 | (version "1.0.0") |
f34f8a3d EF |
4029 | (source |
4030 | (origin | |
4031 | (method git-fetch) | |
4032 | (uri (git-reference | |
4033 | (url "https://github.com/JuliaData/WeakRefStrings.jl") | |
4034 | (commit (string-append "v" version)))) | |
4035 | (file-name (git-file-name name version)) | |
4036 | (sha256 | |
51ef08e5 | 4037 | (base32 "1p8q62zsmi02vyckgy25ddmxns223xrhx575x9lfgvr7jrw1kl2p")))) |
f34f8a3d EF |
4038 | (build-system julia-build-system) |
4039 | (propagated-inputs | |
51ef08e5 EF |
4040 | `(("julia-dataapi" ,julia-dataapi) |
4041 | ("julia-parsers" ,julia-parsers))) | |
f34f8a3d EF |
4042 | (home-page "https://github.com/JuliaData/WeakRefStrings.jl") |
4043 | (synopsis "Efficient string representation and transfer in Julia") | |
4044 | (description "This package provides a minimal String type for Julia that | |
4045 | allows for efficient string representation and transfer") | |
4046 | (license license:expat))) | |
4047 | ||
20b79fed EF |
4048 | (define-public julia-woodburymatrices |
4049 | (package | |
4050 | (name "julia-woodburymatrices") | |
4051 | (version "0.5.3") | |
4052 | (source | |
4053 | (origin | |
4054 | (method git-fetch) | |
4055 | (uri (git-reference | |
4056 | (url "https://github.com/timholy/WoodburyMatrices.jl") | |
4057 | (commit (string-append "v" version)))) | |
4058 | (file-name (git-file-name name version)) | |
4059 | (sha256 | |
4060 | (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd")))) | |
4061 | (build-system julia-build-system) | |
4062 | (home-page "https://github.com/timholy/WoodburyMatrices.jl") | |
4063 | (synopsis "Support for the Woodbury matrix identity for Julia") | |
4064 | (description "This package provides support for the Woodbury matrix identity | |
4065 | for the Julia programming language. This is a generalization of the | |
4066 | Sherman-Morrison formula. Note that the Woodbury matrix identity is notorious | |
4067 | for floating-point roundoff errors, so be prepared for a certain amount of | |
4068 | inaccuracy in the result.") | |
4069 | (license license:expat))) | |
4070 | ||
ddcc5d43 EF |
4071 | (define-public julia-zipfile |
4072 | (package | |
4073 | (name "julia-zipfile") | |
4074 | (version "0.9.3") | |
4075 | (source | |
4076 | (origin | |
4077 | (method git-fetch) | |
4078 | (uri (git-reference | |
4079 | (url "https://github.com/fhs/ZipFile.jl") | |
4080 | (commit (string-append "v" version)))) | |
4081 | (file-name (git-file-name name version)) | |
4082 | (sha256 | |
4083 | (base32 | |
4084 | "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k")))) | |
4085 | (build-system julia-build-system) | |
4086 | (propagated-inputs | |
4087 | `(("julia-zlib-jll" ,julia-zlib-jll))) | |
4088 | (home-page "https://github.com/fhs/ZipFile.jl") | |
4089 | (synopsis "Read/Write ZIP archives in Julia") | |
4090 | (description "This module provides support for reading and writing ZIP | |
4091 | archives in Julia.") | |
4092 | (license license:expat))) | |
4093 | ||
568cebc2 | 4094 | (define-public julia-zygoterules |
4095 | (package | |
4096 | (name "julia-zygoterules") | |
4097 | (version "0.2.1") | |
4098 | (source | |
4099 | (origin | |
4100 | (method git-fetch) | |
4101 | (uri (git-reference | |
4102 | (url "https://github.com/FluxML/ZygoteRules.jl") | |
4103 | (commit (string-append "v" version)))) | |
4104 | (file-name (git-file-name name version)) | |
4105 | (sha256 | |
4106 | (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs")))) | |
4107 | (build-system julia-build-system) | |
4108 | (propagated-inputs | |
4109 | `(("julia-macrotools" ,julia-macrotools))) | |
4110 | (home-page "https://github.com/FluxML/ZygoteRules.jl") | |
4111 | (synopsis "Add minimal custom gradients to Zygote") | |
4112 | (description "Minimal package which enables to add custom gradients to | |
4113 | Zygote, without depending on Zygote itself.") | |
4114 | (license license:expat))) | |
13f7f06c | 4115 | |
4116 | (define-public julia-zygote | |
4117 | (package | |
4118 | (name "julia-zygote") | |
25eca2d8 | 4119 | (version "0.6.10") |
13f7f06c | 4120 | (source |
4121 | (origin | |
4122 | (method git-fetch) | |
4123 | (uri (git-reference | |
4124 | (url "https://github.com/FluxML/Zygote.jl") | |
4125 | (commit (string-append "v" version)))) | |
4126 | (file-name (git-file-name name version)) | |
4127 | (sha256 | |
25eca2d8 | 4128 | (base32 "0qqjzhiqghj07mab24b0n0h4xfzq8r1s9hccrmx1lwjkkskhc5f9")))) |
13f7f06c | 4129 | (build-system julia-build-system) |
4130 | (arguments | |
4131 | `(#:tests? #f)) ;require CUDA, not packaged yet | |
4132 | (propagated-inputs | |
4133 | `(("julia-abstractffs" ,julia-abstractffts) | |
4134 | ("julia-chainrules" ,julia-chainrules) | |
4135 | ("julia-diffrules" ,julia-diffrules) | |
4136 | ("julia-fillarrays" ,julia-fillarrays) | |
4137 | ("julia-forwarddiff" ,julia-forwarddiff) | |
4138 | ("julia-irtools" ,julia-irtools) | |
4139 | ("julia-macrotools" ,julia-macrotools) | |
4140 | ("julia-nanmath" ,julia-nanmath) | |
4141 | ("julia-requires" ,julia-requires) | |
4142 | ("julia-specialfunctions" ,julia-specialfunctions) | |
4143 | ("julia-zygote-rules" ,julia-zygoterules))) | |
4144 | (home-page "https://fluxml.ai/Zygote.jl") | |
4145 | (synopsis "Automatic differentiation in Julia") | |
4146 | (description "Zygote provides source-to-source automatic | |
4147 | differentiation (AD) in Julia, and is the next-generation AD system for the | |
4148 | Flux differentiable programming framework.") | |
4149 | (license license:expat))) |