[jackhill/guix/guix.git] / gnu / packages / opencog.scm

;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.

(define-module (gnu packages opencog)
  #:use-module (gnu packages)
  #:use-module (gnu packages boost)
  #:use-module (gnu packages check)
  #:use-module (gnu packages databases)
  #:use-module (gnu packages guile)
  #:use-module (gnu packages language)
  #:use-module (gnu packages linux)
  #:use-module (gnu packages multiprecision)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages python)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix packages)
  #:use-module (guix git-download)
  #:use-module (guix build-system cmake)
  #:use-module (guix utils))

(define-public cogutil
  ;; The last release was in 2016.  Other OpenCog packages require a later
  ;; version.
  (let ((commit "b07b41b2eaf01627c78b27f1f28bb09ef7086f8e")
        (revision "1"))
    (package
      (name "cogutil")
      (version (git-version "2.0.3" revision commit))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/opencog/cogutil")
                      (commit commit)))
                (file-name (git-file-name name version))
                (sha256
                 (base32
                  "1ymmcrinp0prlxsmxmwdjjl4kgaj7wzq39d5b1q2apgg94yfdhqb"))))
      (build-system cmake-build-system)
      (arguments
       `(#:test-target "tests"))
      (inputs
       (list boost))
      (native-inputs
       `(("cxxtest" ,cxxtest)
         ("python" ,python-minimal)
         ("pkg-config" ,pkg-config)))
      (home-page "https://github.com/opencog/cogutil/")
      (synopsis "Low-level C++ programming utilities used by OpenCog components")
      (description "The OpenCog utilities is a miscellaneous collection of C++
utilities use for typical programming tasks in multiple OpenCog projects.")
      ;; Either of these licenses.
      (license (list license:agpl3 license:asl2.0)))))

(define-public atomspace
  ;; The last release was in 2016 and doesn't build with our Boost package.
  (let ((commit "86c848dfc7135b3c47deb581f8da54a60f6711c9")
        (revision "1"))
    (package
      (name "atomspace")
      (version (git-version "5.0.3" revision commit))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/opencog/atomspace")
                      (commit commit)))
                (file-name (git-file-name name version))
                (sha256
                 (base32
                  "0vxzhszb0z8081li38hid07a5axzxyflsmq1mcn4b1k4z1j8ggch"))))
      (build-system cmake-build-system)
      (arguments
       `(#:test-target "tests"
         #:configure-flags
         (list (string-append "-DGUILE_INCLUDE_DIR="
                              (assoc-ref %build-inputs "guile")
                              "/include/guile/2.2/")
               (string-append "-DGUILE_SITE_DIR="
                              (assoc-ref %outputs "out")
                              "/share/guile/site/2.2/"))))
      (inputs
       (list boost cogutil gmp guile-2.2 postgresql))
      (native-inputs
       `(("cxxtest" ,cxxtest)
         ("python" ,python-minimal)
         ("pkg-config" ,pkg-config)))
      (home-page "https://github.com/opencog/atomspace/")
      (synopsis "OpenCog hypergraph database, query system and rule engine")
      (description "The OpenCog AtomSpace is an in-RAM @dfn{knowledge
representation} (KR) database, an associated query engine and graph-re-writing
system, and a rule-driven inferencing engine that can apply and manipulate
sequences of rules to perform reasoning.  It is a layer that sits on top of
ordinary distributed (graph) databases, providing a large variety of advanced
features not otherwise available.")
      (license license:agpl3))))

(define-public cogserver
  ;; There are no releases.
  (let ((commit "ec5f3b9590db0f6a085b5d0320f5d3710e0f1635")
        (revision "2"))
    (package
      (name "cogserver")
      (version (git-version "0" revision commit))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/opencog/cogserver")
                      (commit commit)))
                (file-name (git-file-name name version))
                (sha256
                 (base32
                  "1h0vcxb6n5dc654xqinqcxc7dxwcs6bsywgir8rhrqiykk760mzl"))))
      (build-system cmake-build-system)
      (arguments
       `(#:test-target "tests"
         #:configure-flags
         (list (string-append "-DGUILE_INCLUDE_DIR="
                              (assoc-ref %build-inputs "guile")
                              "/include/guile/2.2/")
               (string-append "-DGUILE_SITE_DIR="
                              (assoc-ref %outputs "out")
                              "/share/guile/site/2.2/"))))
      (inputs
       (list atomspace boost cogutil gmp guile-2.2))
      (native-inputs
       `(("cxxtest" ,cxxtest)
         ("python" ,python-minimal)
         ("pkg-config" ,pkg-config)))
      (home-page "https://github.com/opencog/cogserver/")
      (synopsis "OpenCog network server")
      (description "The OpenCog Cogserver is a network and job server for the
OpenCog framework.")
      (license license:agpl3))))

(define-public attention
  ;; There are no releases.
  (let ((commit "87d43679280ce486cd6757765d2e1df6d502991d")
        (revision "1"))
    (package
      (name "attention")
      (version (git-version "0" revision commit))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/opencog/attention")
                      (commit commit)))
                (file-name (git-file-name name version))
                (sha256
                 (base32
                  "0sndslphicv6w9qpag168rqkxq5sf71l5qbfx6zhsd5bzlf5fhwv"))))
      (build-system cmake-build-system)
      (arguments
       `(#:test-target "tests"
         #:configure-flags
         (list
          (string-append "-DGUILE_INCLUDE_DIR="
                         (assoc-ref %build-inputs "guile")
                         "/include/guile/2.2/")
          (string-append "-DGUILE_SITE_DIR="
                         (assoc-ref %outputs "out")
                         "/share/guile/site/2.2/"))))
      (inputs
       (list atomspace
             boost
             cogserver
             cogutil
             gmp
             guile-2.2))
      (native-inputs
       `(("cxxtest" ,cxxtest)
         ("python" ,python-minimal)
         ("pkg-config" ,pkg-config)))
      (home-page "https://github.com/opencog/attention/")
      (synopsis "OpenCog attention allocation subsystem")
      (description "Attention Allocation is an OpenCog subsystem meant to
control the application of processing and memory resources to specific
tasks.")
      (license license:agpl3))))

(define-public opencog
  ;; There are no recent releases.
  (let ((commit "ceac90507610cb2d0ee98f97a2086865292b1204")
        (revision "1"))
    (package
      (name "opencog")
      (version (git-version "0.1.4" revision commit))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/opencog/opencog")
                      (commit commit)))
                (file-name (git-file-name name version))
                (sha256
                 (base32
                  "1j8wv910fvrmph370wv5pv2f4bc2s9vl6i7bw3pkmwbdhxkhjbhm"))))
      (build-system cmake-build-system)
      (arguments
       `(#:test-target "tests"
         #:configure-flags
         (list
          (string-append "-DGUILE_INCLUDE_DIR="
                         (assoc-ref %build-inputs "guile")
                         "/include/guile/2.2/")
          (string-append "-DGUILE_SITE_DIR="
                         (assoc-ref %outputs "out")
                         "/share/guile/site/2.2/"))))
      (inputs
       `(("attention" ,attention)
         ("atomspace" ,atomspace)
         ("boost" ,boost)
         ("cogserver" ,cogserver)
         ("cogutil" ,cogutil)
         ("gmp" ,gmp)
         ("guile" ,guile-2.2)
         ("libuuid" ,util-linux "lib")
         ("link-grammar" ,link-grammar)))
      (native-inputs
       `(("cxxtest" ,cxxtest)
         ("python" ,python-minimal)
         ("pkg-config" ,pkg-config)))
      (home-page "https://github.com/opencog/attention/")
      (synopsis "Framework for integrated artificial intelligence")
      (description "OpenCog is a framework for developing AI systems,
especially appropriate for integrative multi-algorithm systems, and artificial
general intelligence systems.  It currently contains a functional core
framework, and a number of cognitive agents at varying levels of completion,
some already displaying interesting and useful functionalities alone and in
combination.")
      (license license:agpl3))))

(define-public agi-bio
  ;; There are no releases.
  (let ((commit "b5c6f3d99e8cca3798bf0cdf2c32f4bdb8098efb")
        (revision "1"))
    (package
      (name "agi-bio")
      (version (git-version "0" revision commit))
      (source (origin
                (method git-fetch)
                (uri (git-reference
                      (url "https://github.com/opencog/agi-bio")
                      (commit commit)))
                (file-name (git-file-name name version))
                (sha256
                 (base32
                  "0c3q0nhmd03nvqm1ih10y28n596cjvfhkcfvzw2fmz1sn3ywdah4"))))
      (build-system cmake-build-system)
      (arguments
       `(#:tests? #f ; there are none
         #:configure-flags
         (list
          (string-append "-DGUILE_INCLUDE_DIR="
                         (assoc-ref %build-inputs "guile")
                         "/include/guile/2.2/")
          (string-append "-DGUILE_SITE_DIR="
                         (assoc-ref %outputs "out")
                         "/share/guile/site/2.2/"))
         #:phases
         (modify-phases %standard-phases
           (add-after 'unpack 'fix-unqualified-load
             (lambda* (#:key outputs #:allow-other-keys)
               (substitute* "bioscience/bioscience.scm"
                 (("\\(load \"bioscience/types/bioscience_types.scm\"\\)")
                  (format #f "(load \"~a/bioscience/types/bioscience_types.scm\")"
                          (string-append (assoc-ref outputs "out")
                                         "/share/guile/site/2.2/opencog"))))
               #t)))))
      (inputs
       (list atomspace cogutil gmp guile-2.2))
      (native-inputs
       `(("cxxtest" ,cxxtest)
         ("python" ,python-minimal)
         ("pkg-config" ,pkg-config)))
      (home-page "https://github.com/opencog/agi-bio")
      (synopsis "Genomic and proteomic data exploration and pattern mining")
      (description "This is a package for genomic and proteomic research using
the OpenCog toolset with Guile.  This includes experiments in applying pattern
mining and other OpenCog components.")
      (license license:agpl3))))
Commit	Line	Data
51c9221a RW	1	;;; GNU Guix --- Functional package management for GNU
	2	;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net>
	3	;;;
	4	;;; This file is part of GNU Guix.
	5	;;;
	6	;;; GNU Guix is free software; you can redistribute it and/or modify it
	7	;;; under the terms of the GNU General Public License as published by
	8	;;; the Free Software Foundation; either version 3 of the License, or (at
	9	;;; your option) any later version.
	10	;;;
	11	;;; GNU Guix is distributed in the hope that it will be useful, but
	12	;;; WITHOUT ANY WARRANTY; without even the implied warranty of
	13	;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	14	;;; GNU General Public License for more details.
	15	;;;
	16	;;; You should have received a copy of the GNU General Public License
	17	;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
	18
	19	(define-module (gnu packages opencog)
	20	#:use-module (gnu packages)
	21	#:use-module (gnu packages boost)
	22	#:use-module (gnu packages check)
fc139475 RW	23	#:use-module (gnu packages databases)
fc139475 RW	24	#:use-module (gnu packages guile)
0d66b9d6 RW	25	#:use-module (gnu packages language)
0d66b9d6 RW	26	#:use-module (gnu packages linux)
fc139475	27	#:use-module (gnu packages multiprecision)
51c9221a RW	28	#:use-module (gnu packages pkg-config)
	29	#:use-module (gnu packages python)
	30	#:use-module ((guix licenses) #:prefix license:)
	31	#:use-module (guix packages)
	32	#:use-module (guix git-download)
	33	#:use-module (guix build-system cmake)
	34	#:use-module (guix utils))
	35
	36	(define-public cogutil
	37	;; The last release was in 2016. Other OpenCog packages require a later
	38	;; version.
	39	(let ((commit "b07b41b2eaf01627c78b27f1f28bb09ef7086f8e")
	40	(revision "1"))
	41	(package
	42	(name "cogutil")
	43	(version (git-version "2.0.3" revision commit))
	44	(source (origin
	45	(method git-fetch)
	46	(uri (git-reference
b0e7b699	47	(url "https://github.com/opencog/cogutil")
51c9221a RW	48	(commit commit)))
	49	(file-name (git-file-name name version))
	50	(sha256
	51	(base32
	52	"1ymmcrinp0prlxsmxmwdjjl4kgaj7wzq39d5b1q2apgg94yfdhqb"))))
	53	(build-system cmake-build-system)
	54	(arguments
	55	`(#:test-target "tests"))
	56	(inputs
8394619b	57	(list boost))
51c9221a RW	58	(native-inputs
	59	`(("cxxtest" ,cxxtest)
	60	("python" ,python-minimal)
	61	("pkg-config" ,pkg-config)))
	62	(home-page "https://github.com/opencog/cogutil/")
	63	(synopsis "Low-level C++ programming utilities used by OpenCog components")
	64	(description "The OpenCog utilities is a miscellaneous collection of C++
	65	utilities use for typical programming tasks in multiple OpenCog projects.")
	66	;; Either of these licenses.
	67	(license (list license:agpl3 license:asl2.0)))))
fc139475 RW	68
	69	(define-public atomspace
	70	;; The last release was in 2016 and doesn't build with our Boost package.
	71	(let ((commit "86c848dfc7135b3c47deb581f8da54a60f6711c9")
	72	(revision "1"))
	73	(package
	74	(name "atomspace")
	75	(version (git-version "5.0.3" revision commit))
	76	(source (origin
	77	(method git-fetch)
	78	(uri (git-reference
b0e7b699	79	(url "https://github.com/opencog/atomspace")
fc139475 RW	80	(commit commit)))
	81	(file-name (git-file-name name version))
	82	(sha256
	83	(base32
	84	"0vxzhszb0z8081li38hid07a5axzxyflsmq1mcn4b1k4z1j8ggch"))))
	85	(build-system cmake-build-system)
	86	(arguments
	87	`(#:test-target "tests"
	88	#:configure-flags
	89	(list (string-append "-DGUILE_INCLUDE_DIR="
	90	(assoc-ref %build-inputs "guile")
	91	"/include/guile/2.2/")
	92	(string-append "-DGUILE_SITE_DIR="
	93	(assoc-ref %outputs "out")
	94	"/share/guile/site/2.2/"))))
	95	(inputs
8394619b	96	(list boost cogutil gmp guile-2.2 postgresql))
fc139475 RW	97	(native-inputs
	98	`(("cxxtest" ,cxxtest)
	99	("python" ,python-minimal)
	100	("pkg-config" ,pkg-config)))
	101	(home-page "https://github.com/opencog/atomspace/")
	102	(synopsis "OpenCog hypergraph database, query system and rule engine")
	103	(description "The OpenCog AtomSpace is an in-RAM @dfn{knowledge
	104	representation} (KR) database, an associated query engine and graph-re-writing
	105	system, and a rule-driven inferencing engine that can apply and manipulate
	106	sequences of rules to perform reasoning. It is a layer that sits on top of
	107	ordinary distributed (graph) databases, providing a large variety of advanced
	108	features not otherwise available.")
	109	(license license:agpl3))))
d946ede5 RW	110
	111	(define-public cogserver
	112	;; There are no releases.
77cf666b RW	113	(let ((commit "ec5f3b9590db0f6a085b5d0320f5d3710e0f1635")
77cf666b RW	114	(revision "2"))
d946ede5 RW	115	(package
	116	(name "cogserver")
	117	(version (git-version "0" revision commit))
	118	(source (origin
	119	(method git-fetch)
	120	(uri (git-reference
b0e7b699	121	(url "https://github.com/opencog/cogserver")
d946ede5 RW	122	(commit commit)))
	123	(file-name (git-file-name name version))
	124	(sha256
	125	(base32
77cf666b	126	"1h0vcxb6n5dc654xqinqcxc7dxwcs6bsywgir8rhrqiykk760mzl"))))
d946ede5 RW	127	(build-system cmake-build-system)
d946ede5 RW	128	(arguments
77cf666b	129	`(#:test-target "tests"
d946ede5 RW	130	#:configure-flags
	131	(list (string-append "-DGUILE_INCLUDE_DIR="
	132	(assoc-ref %build-inputs "guile")
	133	"/include/guile/2.2/")
	134	(string-append "-DGUILE_SITE_DIR="
	135	(assoc-ref %outputs "out")
	136	"/share/guile/site/2.2/"))))
	137	(inputs
8394619b	138	(list atomspace boost cogutil gmp guile-2.2))
d946ede5 RW	139	(native-inputs
	140	`(("cxxtest" ,cxxtest)
	141	("python" ,python-minimal)
	142	("pkg-config" ,pkg-config)))
	143	(home-page "https://github.com/opencog/cogserver/")
	144	(synopsis "OpenCog network server")
	145	(description "The OpenCog Cogserver is a network and job server for the
	146	OpenCog framework.")
	147	(license license:agpl3))))
3cc6b123 RW	148
	149	(define-public attention
	150	;; There are no releases.
	151	(let ((commit "87d43679280ce486cd6757765d2e1df6d502991d")
	152	(revision "1"))
	153	(package
	154	(name "attention")
	155	(version (git-version "0" revision commit))
	156	(source (origin
	157	(method git-fetch)
	158	(uri (git-reference
b0e7b699	159	(url "https://github.com/opencog/attention")
3cc6b123 RW	160	(commit commit)))
	161	(file-name (git-file-name name version))
	162	(sha256
	163	(base32
	164	"0sndslphicv6w9qpag168rqkxq5sf71l5qbfx6zhsd5bzlf5fhwv"))))
	165	(build-system cmake-build-system)
	166	(arguments
	167	`(#:test-target "tests"
	168	#:configure-flags
	169	(list
	170	(string-append "-DGUILE_INCLUDE_DIR="
	171	(assoc-ref %build-inputs "guile")
	172	"/include/guile/2.2/")
	173	(string-append "-DGUILE_SITE_DIR="
	174	(assoc-ref %outputs "out")
	175	"/share/guile/site/2.2/"))))
	176	(inputs
8394619b LC	177	(list atomspace
	178	boost
	179	cogserver
	180	cogutil
	181	gmp
	182	guile-2.2))
3cc6b123 RW	183	(native-inputs
	184	`(("cxxtest" ,cxxtest)
	185	("python" ,python-minimal)
	186	("pkg-config" ,pkg-config)))
	187	(home-page "https://github.com/opencog/attention/")
	188	(synopsis "OpenCog attention allocation subsystem")
	189	(description "Attention Allocation is an OpenCog subsystem meant to
	190	control the application of processing and memory resources to specific
	191	tasks.")
	192	(license license:agpl3))))
0d66b9d6 RW	193
	194	(define-public opencog
	195	;; There are no recent releases.
	196	(let ((commit "ceac90507610cb2d0ee98f97a2086865292b1204")
	197	(revision "1"))
	198	(package
	199	(name "opencog")
	200	(version (git-version "0.1.4" revision commit))
	201	(source (origin
	202	(method git-fetch)
	203	(uri (git-reference
b0e7b699	204	(url "https://github.com/opencog/opencog")
0d66b9d6 RW	205	(commit commit)))
	206	(file-name (git-file-name name version))
	207	(sha256
	208	(base32
	209	"1j8wv910fvrmph370wv5pv2f4bc2s9vl6i7bw3pkmwbdhxkhjbhm"))))
	210	(build-system cmake-build-system)
	211	(arguments
	212	`(#:test-target "tests"
	213	#:configure-flags
	214	(list
	215	(string-append "-DGUILE_INCLUDE_DIR="
	216	(assoc-ref %build-inputs "guile")
	217	"/include/guile/2.2/")
	218	(string-append "-DGUILE_SITE_DIR="
	219	(assoc-ref %outputs "out")
	220	"/share/guile/site/2.2/"))))
	221	(inputs
	222	`(("attention" ,attention)
	223	("atomspace" ,atomspace)
	224	("boost" ,boost)
	225	("cogserver" ,cogserver)
	226	("cogutil" ,cogutil)
	227	("gmp" ,gmp)
	228	("guile" ,guile-2.2)
bb93042c	229	("libuuid" ,util-linux "lib")
0d66b9d6 RW	230	("link-grammar" ,link-grammar)))
	231	(native-inputs
	232	`(("cxxtest" ,cxxtest)
	233	("python" ,python-minimal)
	234	("pkg-config" ,pkg-config)))
	235	(home-page "https://github.com/opencog/attention/")
	236	(synopsis "Framework for integrated artificial intelligence")
	237	(description "OpenCog is a framework for developing AI systems,
	238	especially appropriate for integrative multi-algorithm systems, and artificial
	239	general intelligence systems. It currently contains a functional core
	240	framework, and a number of cognitive agents at varying levels of completion,
	241	some already displaying interesting and useful functionalities alone and in
	242	combination.")
	243	(license license:agpl3))))
62af74b7 RW	244
	245	(define-public agi-bio
	246	;; There are no releases.
	247	(let ((commit "b5c6f3d99e8cca3798bf0cdf2c32f4bdb8098efb")
	248	(revision "1"))
	249	(package
	250	(name "agi-bio")
	251	(version (git-version "0" revision commit))
	252	(source (origin
	253	(method git-fetch)
	254	(uri (git-reference
b0e7b699	255	(url "https://github.com/opencog/agi-bio")
62af74b7 RW	256	(commit commit)))
	257	(file-name (git-file-name name version))
	258	(sha256
	259	(base32
537d0827	260	"0c3q0nhmd03nvqm1ih10y28n596cjvfhkcfvzw2fmz1sn3ywdah4"))))
62af74b7 RW	261	(build-system cmake-build-system)
	262	(arguments
	263	`(#:tests? #f ; there are none
	264	#:configure-flags
	265	(list
	266	(string-append "-DGUILE_INCLUDE_DIR="
	267	(assoc-ref %build-inputs "guile")
	268	"/include/guile/2.2/")
	269	(string-append "-DGUILE_SITE_DIR="
	270	(assoc-ref %outputs "out")
eecf7243 RW	271	"/share/guile/site/2.2/"))
	272	#:phases
	273	(modify-phases %standard-phases
	274	(add-after 'unpack 'fix-unqualified-load
	275	(lambda* (#:key outputs #:allow-other-keys)
	276	(substitute* "bioscience/bioscience.scm"
	277	(("\\(load \"bioscience/types/bioscience_types.scm\"\\)")
	278	(format #f "(load \"~a/bioscience/types/bioscience_types.scm\")"
	279	(string-append (assoc-ref outputs "out")
	280	"/share/guile/site/2.2/opencog"))))
	281	#t)))))
62af74b7	282	(inputs
8394619b	283	(list atomspace cogutil gmp guile-2.2))
62af74b7 RW	284	(native-inputs
	285	`(("cxxtest" ,cxxtest)
	286	("python" ,python-minimal)
	287	("pkg-config" ,pkg-config)))
	288	(home-page "https://github.com/opencog/agi-bio")
	289	(synopsis "Genomic and proteomic data exploration and pattern mining")
	290	(description "This is a package for genomic and proteomic research using
	291	the OpenCog toolset with Guile. This includes experiments in applying pattern
	292	mining and other OpenCog components.")
	293	(license license:agpl3))))